Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005706.1

Orthogroup ID

OG0003196

Physical Location & Seq

Genomic Coordinates Reverse (-)

53233 .. 54390

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005706.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgcacgccaagaccgactccgaggtcacaagcctcgccccatcctcccctacccgatccccccgccgcccagtctactacgtccagagcccctcccgcgactcccacgacggcgagaagaccaccacctcatttcagtccacccccgtcctcagccccgccggctcccctccccactcccactcctccgtcggccgccactcccgcgactcctcctccacccgattctccggctccctcaagcccggatccaagaagatccagcacaacaacgacggctcccgcggccaccaccaccgcaagggcggccacaaggcatggaaggactgcgctgtcatcgaagaagaaggccttctcgacgacgaagatcgcgaacgaggcttcccccggcgatgttatttcccggctttcgttctcggattcttcctcctcttcaccatgttctctctcattctctacggcgccagtaagcccatgaagcccaagatcaccatgaagagcgttagatttgaacaattcaagatccaagcgggttcagacaacaccggagtagccaccgaaatgatctccgtcaactccaccgtgaaattcacattccgcaacaccggcacatttttcggagtccatgtctcgccaaagcctctagatctatcctactcccaaatcacaattgcctccggaactgtcaagaagttttatcagtcaaggaggagccagagatcggtgacggtatcagtattcggcgacaaaattccgttatacgggagtggagctagtatcagtagctccacggggacgacattgctgccggtgccgctgaaattggacttcttgatcaaatccagagcctacgttttgggcaaactagtgaagcccaaattcaacaggcgggtcgagtgcattgtgactttcgatcccaaaaagctcaacgttgcaatcgcgctcaagaattgcacctataattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

321

Amino Acids

35.52

Weight (kDa)

10.03

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45688 AT1G45688
fragaria_vesca	FvH4_1g16160 FvH4_1g16160 FvH4_1g16160 FvH4_2g34240 FvH4_2g34240
malus_domestica	MD02G1173700.v1.1 MD08G1098400.v1.1 MD15G1080900.v1.1
prunus_persica	Prupe.1G433700_v2.0.a1 Prupe.7G132000_v2.0.a1 Prupe.7G132000_v2.0.a1
pyrus_communis	pycom08g08020 pycom15g07540
rosa_chinensis	RchiOBHm_Chr2g0105841 RchiOBHm_Chr6g0308181
rosa_laevigata	RLG00000010661 RLG00000017464
rosa_multiflora	Rmu_sc0004386.1_g000024 Rmu_sc0005706.1_g000011 Rmu_sc0010389.1_g000008
rosa_roxburghii	Rroxscaffold_2G00137840 Rroxscaffold_7G00160380 Rroxscaffold_7G00160470
rosa_rugosa	Rorug02G0130800 Rorug06G0364500
rosa_samantha	Rh2AG181900 Rh2BG191700 Rh2CG186300 Rh2DG188300 Rh6AG473700 Rh6BG484500 Rh6CG489700 Rh6DG475700
rosa_wichuraiana	Rw2G014260 Rw6G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 332
AccB1I	GGYRCC	2 cut(s)	461, 811
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	5 cut(s)	99, 207, 285, 372, 941
AccIII	TCCGGA	1 cut(s)	677
AclI	AACGTT	1 cut(s)	930
AclWI	GGATC	6 cut(s)	51, 243, 253, 256, 517, 908
AcoI	YGGCCR	3 cut(s)	193, 286, 307
AcsI	RAATTY	3 cut(s)	587, 750, 878
AcyI	GRCGYC	1 cut(s)	462
AfiI	CCNNNNNNNGG	3 cut(s)	301, 721, 761
AgsI	TTSAA	3 cut(s)	512, 520, 883
AhlI	ACTAGT	1 cut(s)	865
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	3 cut(s)	773, 786, 925
AluI	AGCT	3 cut(s)	773, 786, 925
Alw26I	GTCTC	1 cut(s)	634
AlwI	GGATC	6 cut(s)	51, 243, 253, 256, 517, 908
Aor13HI	TCCGGA	1 cut(s)	677
AoxI	GGCC	4 cut(s)	193, 286, 307, 349
ApeKI	GCWGC	1 cut(s)	805
ApoI	RAATTY	3 cut(s)	587, 750, 878
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	3 cut(s)	332, 464, 943
AsuC2I	CCSGG	3 cut(s)	246, 388, 404
AsuHPI	GGTGA	3 cut(s)	427, 481, 736
BamHI	GGATCC	1 cut(s)	248
BanI	GGYRCC	2 cut(s)	461, 811
BanII	GRGCYC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	125
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	792
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	3 cut(s)	127, 292, 475
BcgI	CGANNNNNNTGC	4 cut(s)	598, 632, 787, 821
BclI	TGATCA	1 cut(s)	834
BcnI	CCSGG	3 cut(s)	246, 388, 404
BcoDI	GTCTC	1 cut(s)	634
BcuI	ACTAGT	1 cut(s)	865
BfaI	CTAG	3 cut(s)	644, 774, 866
BfoI	RGCGCY	1 cut(s)	465
BglI	GCCNNNNNGGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	6 cut(s)	67, 196, 286, 307, 806, 815
BlsI	GCNGC	6 cut(s)	68, 197, 287, 308, 807, 816
Bme1390I	CCNGG	3 cut(s)	246, 388, 404
BmiI	GGNNCC	7 cut(s)	166, 235, 250, 280, 463, 713, 813
BmrFI	CCNGG	3 cut(s)	246, 388, 404
BmrI	ACTGGG	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	2 cut(s)	224, 929
BpuMI	CCSGG	3 cut(s)	246, 388, 404
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	4 cut(s)	21, 283, 386, 789
BsaWI	WCCGGW	2 cut(s)	545, 677
BsaXI	ACNNNNNCTCC	8 cut(s)	167, 197, 200, 230, 263, 293, 612, 642
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 721, 761
Bse118I	RCCGGY	3 cut(s)	161, 605, 808
Bse1I	ACTGG	2 cut(s)	71, 465
Bse3DI	GCAATG	1 cut(s)	800
BseAI	TCCGGA	1 cut(s)	677
BseDI	CCNNGG	4 cut(s)	21, 283, 386, 789
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	3 cut(s)	301, 721, 761
BseMI	GCAATG	1 cut(s)	800
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	2 cut(s)	71, 465
BseRI	GAGGAG	5 cut(s)	175, 202, 205, 419, 724
BseX3I	CGGCCG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	792
Bsh1236I	CGCG	5 cut(s)	99, 207, 285, 372, 941
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	4 cut(s)	195, 288, 309, 351
BshNI	GGYRCC	2 cut(s)	461, 811
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	9 cut(s)	162, 231, 246, 388, 404, 546, 606, 678, 809
BslFI	GGGAC	1 cut(s)	808
BslI	CCNNNNNNNGG	3 cut(s)	301, 721, 761
BsmAI	GTCTC	1 cut(s)	634
BsmFI	GGGAC	1 cut(s)	808
BsnI	GGCC	4 cut(s)	195, 288, 309, 351
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	677
Bsp68I	TCGCGA	1 cut(s)	372
BspANI	GGCC	4 cut(s)	195, 288, 309, 351
BspCNI	CTCAG	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	677
BspFNI	CGCG	5 cut(s)	99, 207, 285, 372, 941
BspLI	GGNNCC	7 cut(s)	166, 235, 250, 280, 463, 713, 813
BspPI	GGATC	6 cut(s)	51, 243, 253, 256, 517, 908
BspQI	GCTCTTC	1 cut(s)	491
BspT107I	GGYRCC	2 cut(s)	461, 811
BsrDI	GCAATG	1 cut(s)	800
BsrFI	RCCGGY	3 cut(s)	161, 605, 808
BsrI	ACTGG	2 cut(s)	71, 465
BssAI	RCCGGY	3 cut(s)	161, 605, 808
BssECI	CCNNGG	4 cut(s)	21, 283, 386, 789
BssNI	GRCGYC	1 cut(s)	462
Bst4CI	ACNGT	3 cut(s)	583, 685, 730
Bst6I	CTCTTC	2 cut(s)	437, 491
BstACI	GRCGYC	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	6, 163
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	2 cut(s)	283, 789
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	5 cut(s)	99, 207, 285, 372, 941
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	3 cut(s)	332, 464, 943
BstMAI	GTCTC	1 cut(s)	634
BstMCI	CGRYCG	1 cut(s)	196
BstSCI	CCNGG	3 cut(s)	244, 386, 402
BstUI	CGCG	5 cut(s)	99, 207, 285, 372, 941
BstV1I	GCAGC	1 cut(s)	792
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	4 cut(s)	248, 258, 522, 646
BstYI	RGATCY	4 cut(s)	248, 258, 522, 646
BstZI	CGGCCG	1 cut(s)	193
BsuRI	GGCC	4 cut(s)	195, 288, 309, 351
BtgI	CCRYGG	2 cut(s)	283, 789
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	41
BtuMI	TCGCGA	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	6, 163
CfoI	GCGC	3 cut(s)	332, 464, 943
Cfr10I	RCCGGY	3 cut(s)	161, 605, 808
Cfr42I	CCGCGG	1 cut(s)	286
CviAII	CATG	5 cut(s)	318, 439, 475, 493, 626
DdeI	CTNAG	1 cut(s)	152
DinI	GGCGCC	1 cut(s)	463
DrdI	GACNNNNNNGTC	2 cut(s)	23, 332
DseDI	GACNNNNNNGTC	2 cut(s)	23, 332
EaeI	YGGCCR	3 cut(s)	193, 286, 307
EagI	CGGCCG	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	437, 491
EarI	CTCTTC	2 cut(s)	437, 491
EclXI	CGGCCG	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	92
Eco52I	CGGCCG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	92
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
FaeI	CATG	5 cut(s)	321, 442, 478, 496, 629
FaiI	YATR	7 cut(s)	319, 440, 476, 494, 627, 760, 960
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	808
FatI	CATG	5 cut(s)	317, 438, 474, 492, 625
FauI	CCCGC	7 cut(s)	71, 104, 166, 212, 290, 523, 882
FbaI	TGATCA	1 cut(s)	834
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	6 cut(s)	67, 196, 286, 307, 806, 815
FokI	GGATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	6 cut(s)	67, 196, 286, 307, 806, 815
FspBI	CTAG	3 cut(s)	644, 774, 866
GlaI	GCGC	3 cut(s)	331, 463, 942
GluI	GCNGC	6 cut(s)	67, 196, 286, 307, 806, 815
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	4 cut(s)	195, 288, 309, 351
HapII	CCGG	9 cut(s)	162, 231, 246, 388, 404, 546, 606, 678, 809
HhaI	GCGC	3 cut(s)	332, 464, 943
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	5 cut(s)	321, 442, 478, 496, 629
Hin6I	GCGC	3 cut(s)	330, 462, 941
HinP1I	GCGC	3 cut(s)	330, 462, 941
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	6 cut(s)	17, 101, 209, 225, 420, 621
HpaII	CCGG	9 cut(s)	162, 231, 246, 388, 404, 546, 606, 678, 809
HphI	GGTGA	3 cut(s)	427, 481, 736
Hpy166II	GTNNAC	3 cut(s)	76, 141, 574
Hpy188I	TCNGA	4 cut(s)	22, 419, 538, 620
Hpy8I	GTNNAC	3 cut(s)	76, 141, 574
Hpy99I	CGWCG	5 cut(s)	113, 194, 278, 362, 365
HpyAV	CCTTC	3 cut(s)	316, 341, 362
HpyCH4III	ACNGT	3 cut(s)	583, 685, 730
HpyCH4IV	ACGT	3 cut(s)	81, 852, 930
HpyCH4V	TGCA	4 cut(s)	4, 900, 935, 954
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	3 cut(s)	81, 852, 930
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	5 cut(s)	321, 442, 478, 496, 629
HspAI	GCGC	3 cut(s)	330, 462, 941
KasI	GGCGCC	1 cut(s)	461
Kpn2I	TCCGGA	1 cut(s)	677
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	834
KspI	CCGCGG	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	6 cut(s)	170, 239, 284, 711, 770, 791
Lsp1109I	GCAGC	1 cut(s)	792
MaeI	CTAG	3 cut(s)	644, 774, 866
MaeII	ACGT	3 cut(s)	81, 852, 930
MaeIII	GTNAC	3 cut(s)	25, 724, 904
MboII	GAAGA	8 cut(s)	130, 268, 353, 356, 377, 415, 424, 508
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	4 cut(s)	248, 258, 522, 646
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	8 cut(s)	515, 587, 669, 750, 821, 878, 949, 961
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	4 cut(s)	11, 95, 203, 630
MroI	TCCGGA	1 cut(s)	677
MroNI	GCCGGC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	1 cut(s)	964
MslI	CAYNNNNRTG	1 cut(s)	560
MspA1I	CMGCKG	2 cut(s)	285, 817
MspI	CCGG	9 cut(s)	162, 231, 246, 388, 404, 546, 606, 678, 809
MspR9I	CCNGG	3 cut(s)	246, 388, 404
MunI	CAATTG	1 cut(s)	669
MvnI	CGCG	5 cut(s)	99, 207, 285, 372, 941
NaeI	GCCGGC	1 cut(s)	163
NarI	GGCGCC	1 cut(s)	462
NciI	CCSGG	3 cut(s)	246, 388, 404
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	5 cut(s)	321, 442, 478, 496, 629
NlaIV	GGNNCC	7 cut(s)	166, 235, 250, 280, 463, 713, 813
NmuCI	GTSAC	3 cut(s)	25, 724, 904
NruI	TCGCGA	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 369
PdiI	GCCGGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	225, 420
PkrI	GCNGC	6 cut(s)	68, 197, 287, 308, 807, 816
PleI	GAGTC	4 cut(s)	11, 95, 203, 629
PluTI	GGCGCC	1 cut(s)	465
PpsI	GAGTC	4 cut(s)	11, 95, 203, 629
Psp1406I	AACGTT	1 cut(s)	930
PspN4I	GGNNCC	7 cut(s)	166, 235, 250, 280, 463, 713, 813
PsuI	RGATCY	4 cut(s)	248, 258, 522, 646
RruI	TCGCGA	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	560
SacII	CCGCGG	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	964
SatI	GCNGC	6 cut(s)	67, 196, 286, 307, 806, 815
SchI	GAGTC	4 cut(s)	11, 95, 203, 630
ScrFI	CCNGG	3 cut(s)	246, 388, 404
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	9 cut(s)	27, 84, 131, 775, 788, 855, 927, 933, 959
SfoI	GGCGCC	1 cut(s)	463
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	2 cut(s)	239, 944
SmoI	CTYRAG	2 cut(s)	239, 944
SpeI	ACTAGT	1 cut(s)	865
Sse9I	AATT	8 cut(s)	515, 587, 669, 750, 821, 878, 949, 961
SseBI	AGGCCT	1 cut(s)	351
SspDI	GGCGCC	1 cut(s)	461
SspMI	CTAG	3 cut(s)	644, 774, 866
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	3 cut(s)	244, 386, 402
TaaI	ACNGT	3 cut(s)	583, 685, 730
TaiI	ACGT	3 cut(s)	84, 855, 933
TaqI	TCGA	4 cut(s)	339, 357, 894, 912
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	8 cut(s)	515, 587, 669, 750, 821, 878, 949, 961
TauI	GCSGC	5 cut(s)	69, 198, 288, 309, 817
TfiI	GAWTC	2 cut(s)	225, 420
Tru1I	TTAA	1 cut(s)	964
Tru9I	TTAA	1 cut(s)	964
TseFI	GTSAC	3 cut(s)	25, 724, 904
TseI	GCWGC	1 cut(s)	805
Tsp45I	GTSAC	3 cut(s)	25, 724, 904
TspDTI	ATGAA	2 cut(s)	491, 509
TspGWI	ACGGA	3 cut(s)	178, 559, 744
XapI	RAATTY	3 cut(s)	587, 750, 878
XbaI	TCTAGA	1 cut(s)	643
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	3 cut(s)	644, 774, 866

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.