FvH4_2g34240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003196
Physical Location & Seq
Forward (+)
25479323 .. 25481435
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34240.t1

Sequence Viewer

Length: 960 bp
ATGCACGCCAAGACCGACTCCGAGGTCACAAGCCTCGCCCCTTCTTCCCCAACCCGATCCCCCCGCCGCCCAGTCTACTACGTCCAGAGCCCCTCCCGCGACTCCCACGACGGCGAGAAGACCACCACCTCCTTCCAGTCCACCCCCGTCCTCAGCCCCGCCGGCTCTCCTCCCCACTCCCACTCCTCCGTCGGCCGCCACTCCCGCGACTCCTCCTCCACCCGCTTCTCCGGCTCCATCAAGCCCGGATCCAAGAAGATCCAGCCCAACAACGACTCCTCCCGCCACCACCGCAAGGACGGCCACAAGGCCTGGAAGGACTGCGCCGTCATCGAAGAAGAAGGCCTCCTCGACGACGACGACCGCGAACGTGGCTTCCCCCGCCGATGCTATTTCCCCGCCTTCGTTCTCGGATTCTTCCTCCTCTTCTCCATGTTCTCTCTCATTCTCTACGGCGCCAGTAAGCCCATGAAGCCCAAGATCACCATGAAGAGTGTCAAGTTTGAACAGTTCAAGATCCAAGCGGGTTCAGACTCCACCGGAGTAAGCACCGACATGATCTCCGTCAACTCCACCGTCAAATTCACATTCCGCAACACCGGCACGTTTTTCGGAGTCCACGTCTCGCCCGAGCCTCTAGATCTATCCTACTCTCAGATCGCCATCGCCTCCGGAATCGTGAAGAAGTTCTATCAATCAAGGAGGAGCCAGAGAACAGTGACGGTGTCAGTAATCGGCGACAAAATTCCGTTATACGGGAGTGGAGCTAGTATAAGTAGCTCAACGGGGACGACATTGCTGCCGGTGCCGCTGAAATTGGATTTCTTGATCAAATCTAGAGCCTACGTTTTGGGTAAACTAGTGAAGCCCAAGTTCAACCGGCGCGTGGGATGCACTGTAACTTTCGATCCTAAGAAGCTCAACGTCGCAATCGCGCTCAAGAATTGCACTTACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

320

Amino Acids

35.14

Weight (kDa)

9.94

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 23, 326
AccB1I GGYRCC 2 cut(s) 455, 805
AccI GTMKAC 1 cut(s) 75
AccII CGCG 5 cut(s) 99, 207, 366, 885, 935
AccIII TCCGGA 1 cut(s) 671
AclWI GGATC 6 cut(s) 51, 243, 253, 256, 511, 902
AcoI YGGCCR 2 cut(s) 193, 301
AcsI RAATTY 2 cut(s) 581, 744
AcyI GRCGYC 1 cut(s) 456
AfiI CCNNNNNNNGG 3 cut(s) 295, 755, 886
AgsI TTSAA 3 cut(s) 506, 514, 877
AhlI ACTAGT 1 cut(s) 859
AjiI CACGTC 1 cut(s) 622
AjnI CCWGG 1 cut(s) 311
AloI GAACNNNNNNTCC 2 cut(s) 360, 392
AluBI AGCT 3 cut(s) 767, 780, 919
AluI AGCT 3 cut(s) 767, 780, 919
Alw26I GTCTC 1 cut(s) 628
AlwI GGATC 6 cut(s) 51, 243, 253, 256, 511, 902
Ama87I CYCGRG 1 cut(s) 629
Aor13HI TCCGGA 1 cut(s) 671
AoxI GGCC 4 cut(s) 193, 301, 309, 343
ApeKI GCWGC 1 cut(s) 799
ApoI RAATTY 2 cut(s) 581, 744
Asp700I GAANNNNTTC 1 cut(s) 686
AspLEI GCGC 4 cut(s) 326, 458, 885, 937
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 1 cut(s) 475
AvaI CYCGRG 1 cut(s) 629
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 2 cut(s) 455, 805
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 125
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 786
BccI CCATC 2 cut(s) 245, 671
BceAI ACGGC 4 cut(s) 127, 311, 316, 469
BcgI CGANNNNNNTGC 4 cut(s) 592, 626, 781, 815
BciT130I CCWGG 1 cut(s) 313
BclI TGATCA 1 cut(s) 828
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 628
BcuI ACTAGT 1 cut(s) 859
BfaI CTAG 4 cut(s) 638, 768, 837, 860
BfoI RGCGCY 1 cut(s) 459
BglI GCCNNNNNGGC 1 cut(s) 162
BglII AGATCT 1 cut(s) 640
BisI GCNGC 4 cut(s) 67, 196, 800, 809
BlsI GCNGC 4 cut(s) 68, 197, 801, 810
Bme1390I CCNGG 2 cut(s) 246, 313
BmeT110I CYCGRG 1 cut(s) 629
BmgBI CACGTC 1 cut(s) 622
BmiI GGNNCC 5 cut(s) 235, 250, 457, 707, 807
BmrFI CCNGG 2 cut(s) 246, 313
BmrI ACTGGG 1 cut(s) 65
BmsI GCATC 2 cut(s) 377, 881
BmuI ACTGGG 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 923
BpuMI CCSGG 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 662
BsaHI GRCGYC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 2 cut(s) 539, 671
Bsc4I CCNNNNNNNGG 3 cut(s) 295, 755, 886
Bse118I RCCGGY 4 cut(s) 161, 599, 802, 879
Bse1I ACTGG 3 cut(s) 71, 136, 459
Bse3DI GCAATG 1 cut(s) 794
Bse8I GATNNNNATC 1 cut(s) 662
BseAI TCCGGA 1 cut(s) 671
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 896
BseJI GATNNNNATC 1 cut(s) 662
BseLI CCNNNNNNNGG 3 cut(s) 295, 755, 886
BseMI GCAATG 1 cut(s) 794
BseMII CTCAG 2 cut(s) 166, 668
BseNI ACTGG 3 cut(s) 71, 136, 459
BseRI GAGGAG 8 cut(s) 159, 175, 202, 205, 268, 338, 413, 718
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 786
Bsh1236I CGCG 5 cut(s) 99, 207, 366, 885, 935
Bsh1285I CGRYCG 2 cut(s) 196, 364
BshFI GGCC 4 cut(s) 195, 303, 311, 345
BshNI GGYRCC 2 cut(s) 455, 805
BsiEI CGRYCG 2 cut(s) 196, 364
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 8 cut(s) 162, 231, 246, 540, 600, 672, 803, 880
BslFI GGGAC 1 cut(s) 802
BslI CCNNNNNNNGG 3 cut(s) 295, 755, 886
BsmAI GTCTC 1 cut(s) 628
BsmBI CGTCTC 1 cut(s) 628
BsmFI GGGAC 1 cut(s) 802
BsnI GGCC 4 cut(s) 195, 303, 311, 345
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 92
Bsp13I TCCGGA 1 cut(s) 671
BspANI GGCC 4 cut(s) 195, 303, 311, 345
BspCNI CTCAG 2 cut(s) 165, 667
BspEI TCCGGA 1 cut(s) 671
BspFNI CGCG 5 cut(s) 99, 207, 366, 885, 935
BspLI GGNNCC 5 cut(s) 235, 250, 457, 707, 807
BspPI GGATC 6 cut(s) 51, 243, 253, 256, 511, 902
BspT107I GGYRCC 2 cut(s) 455, 805
BsrDI GCAATG 1 cut(s) 794
BsrFI RCCGGY 4 cut(s) 161, 599, 802, 879
BsrI ACTGG 3 cut(s) 71, 136, 459
BssAI RCCGGY 4 cut(s) 161, 599, 802, 879
BssECI CCNNGG 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 6 cut(s) 510, 577, 718, 724, 898, 956
Bst6I CTCTTC 2 cut(s) 431, 485
BstACI GRCGYC 1 cut(s) 456
BstC8I GCNNGC 2 cut(s) 6, 163
BstDEI CTNAG 3 cut(s) 152, 654, 912
BstF5I GGATG 1 cut(s) 896
BstFNI CGCG 5 cut(s) 99, 207, 366, 885, 935
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 4 cut(s) 326, 458, 885, 937
BstMAI GTCTC 1 cut(s) 628
BstMCI CGRYCG 2 cut(s) 196, 364
BstNI CCWGG 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 244, 311
BstUI CGCG 5 cut(s) 99, 207, 366, 885, 935
BstV1I GCAGC 1 cut(s) 786
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 4 cut(s) 248, 258, 516, 640
BstYI RGATCY 4 cut(s) 248, 258, 516, 640
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 4 cut(s) 195, 303, 311, 345
BtgZI GCGATG 1 cut(s) 649
BtrI CACGTC 1 cut(s) 622
BtsCI GGATG 1 cut(s) 896
BtsIMutI CAGTG 2 cut(s) 723, 894
Cac8I GCNNGC 2 cut(s) 6, 163
CfoI GCGC 4 cut(s) 326, 458, 885, 937
Cfr10I RCCGGY 4 cut(s) 161, 599, 802, 879
CviAII CATG 4 cut(s) 433, 469, 487, 556
DdeI CTNAG 3 cut(s) 152, 654, 912
DinI GGCGCC 1 cut(s) 457
DrdI GACNNNNNNGTC 2 cut(s) 23, 326
DseDI GACNNNNNNGTC 2 cut(s) 23, 326
EaeI YGGCCR 2 cut(s) 193, 301
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 431, 485
EarI CTCTTC 2 cut(s) 431, 485
EclXI CGGCCG 1 cut(s) 193
Eco147I AGGCCT 2 cut(s) 311, 345
Eco24I GRGCYC 1 cut(s) 92
Eco52I CGGCCG 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 629
EcoRII CCWGG 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 457
EheI GGCGCC 1 cut(s) 457
Esp3I CGTCTC 1 cut(s) 628
FaeI CATG 4 cut(s) 436, 472, 490, 559
FaiI YATR 6 cut(s) 434, 470, 488, 557, 754, 773
FaqI GGGAC 1 cut(s) 802
FatI CATG 4 cut(s) 432, 468, 486, 555
FauI CCCGC 9 cut(s) 71, 104, 166, 212, 230, 290, 389, 406, 517
FbaI TGATCA 1 cut(s) 828
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 4 cut(s) 67, 196, 800, 809
FokI GGATG 1 cut(s) 903
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 4 cut(s) 67, 196, 800, 809
FspBI CTAG 4 cut(s) 638, 768, 837, 860
GlaI GCGC 4 cut(s) 325, 457, 884, 936
GluI GCNGC 4 cut(s) 67, 196, 800, 809
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 4 cut(s) 195, 303, 311, 345
HapII CCGG 8 cut(s) 162, 231, 246, 540, 600, 672, 803, 880
HhaI GCGC 4 cut(s) 326, 458, 885, 937
Hin1I GRCGYC 1 cut(s) 456
Hin1II CATG 4 cut(s) 436, 472, 490, 559
Hin6I GCGC 4 cut(s) 324, 456, 883, 935
HinP1I GCGC 4 cut(s) 324, 456, 883, 935
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HinfI GANTC 8 cut(s) 17, 101, 209, 275, 414, 533, 615, 675
HpaII CCGG 8 cut(s) 162, 231, 246, 540, 600, 672, 803, 880
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 5 cut(s) 76, 141, 568, 619, 857
Hpy188I TCNGA 5 cut(s) 22, 413, 532, 614, 657
Hpy188III TCNNGA 8 cut(s) 85, 514, 638, 672, 679, 826, 837, 940
Hpy8I GTNNAC 5 cut(s) 76, 141, 568, 619, 857
Hpy99I CGWCG 6 cut(s) 113, 194, 356, 359, 362, 929
HpyAV CCTTC 5 cut(s) 51, 142, 310, 335, 412
HpyCH4III ACNGT 6 cut(s) 510, 577, 718, 724, 898, 956
HpyCH4IV ACGT 6 cut(s) 81, 370, 605, 621, 846, 924
HpyCH4V TGCA 3 cut(s) 4, 894, 948
HpyF3I CTNAG 3 cut(s) 152, 654, 912
HpySE526I ACGT 6 cut(s) 81, 370, 605, 621, 846, 924
Hsp92I GRCGYC 1 cut(s) 456
Hsp92II CATG 4 cut(s) 436, 472, 490, 559
HspAI GCGC 4 cut(s) 324, 456, 883, 935
KasI GGCGCC 1 cut(s) 455
Kpn2I TCCGGA 1 cut(s) 671
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 828
LmnI GCTCC 3 cut(s) 239, 705, 764
Lsp1109I GCAGC 1 cut(s) 786
LweI GCATC 2 cut(s) 377, 881
MaeI CTAG 4 cut(s) 638, 768, 837, 860
MaeII ACGT 6 cut(s) 81, 370, 605, 621, 846, 924
MaeIII GTNAC 3 cut(s) 25, 718, 898
MboII GAAGA 9 cut(s) 36, 130, 268, 347, 350, 409, 418, 502, 694
MflI RGATCY 4 cut(s) 248, 258, 516, 640
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 4 cut(s) 581, 744, 815, 943
Mly113I GGCGCC 1 cut(s) 456
MlyI GAGTC 6 cut(s) 11, 95, 203, 269, 527, 624
MroI TCCGGA 1 cut(s) 671
MroNI GCCGGC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 686
MseI TTAA 1 cut(s) 958
MslI CAYNNNNRTG 1 cut(s) 554
MspA1I CMGCKG 1 cut(s) 811
MspI CCGG 8 cut(s) 162, 231, 246, 540, 600, 672, 803, 880
MspR9I CCNGG 2 cut(s) 246, 313
MvaI CCWGG 1 cut(s) 313
MvnI CGCG 5 cut(s) 99, 207, 366, 885, 935
NaeI GCCGGC 1 cut(s) 163
NarI GGCGCC 1 cut(s) 456
NciI CCSGG 1 cut(s) 246
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 4 cut(s) 436, 472, 490, 559
NlaIV GGNNCC 5 cut(s) 235, 250, 457, 707, 807
NmuCI GTSAC 2 cut(s) 25, 718
PceI AGGCCT 2 cut(s) 311, 345
PcsI WCGNNNNNNNCGW 5 cut(s) 12, 357, 363, 618, 627
PdiI GCCGGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 2 cut(s) 414, 675
PflFI GACNNNGTC 1 cut(s) 724
PkrI GCNGC 4 cut(s) 68, 197, 801, 810
PleI GAGTC 6 cut(s) 11, 95, 203, 269, 527, 623
PluTI GGCGCC 1 cut(s) 459
PpsI GAGTC 6 cut(s) 11, 95, 203, 269, 527, 623
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 5 cut(s) 235, 250, 457, 707, 807
PsuI RGATCY 4 cut(s) 248, 258, 516, 640
PsyI GACNNNGTC 1 cut(s) 724
RseI CAYNNNNRTG 1 cut(s) 554
SaqAI TTAA 1 cut(s) 958
SatI GCNGC 4 cut(s) 67, 196, 800, 809
SchI GAGTC 6 cut(s) 11, 95, 203, 269, 527, 624
ScrFI CCNGG 2 cut(s) 246, 313
SduI GDGCHC 1 cut(s) 92
SfaNI GCATC 2 cut(s) 377, 881
SfoI GGCGCC 1 cut(s) 457
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
SpeI ACTAGT 1 cut(s) 859
Sse9I AATT 4 cut(s) 581, 744, 815, 943
SseBI AGGCCT 2 cut(s) 311, 345
SspDI GGCGCC 1 cut(s) 455
SspMI CTAG 4 cut(s) 638, 768, 837, 860
StuI AGGCCT 2 cut(s) 311, 345
StyD4I CCNGG 2 cut(s) 244, 311
TaaI ACNGT 6 cut(s) 510, 577, 718, 724, 898, 956
TaiI ACGT 6 cut(s) 84, 373, 608, 624, 849, 927
TaqI TCGA 3 cut(s) 333, 351, 906
TaqII GACCGA 1 cut(s) 29
TasI AATT 4 cut(s) 581, 744, 815, 943
TauI GCSGC 3 cut(s) 69, 198, 811
TfiI GAWTC 2 cut(s) 414, 675
Tru1I TTAA 1 cut(s) 958
Tru9I TTAA 1 cut(s) 958
TscAI CASTG 2 cut(s) 723, 901
TseFI GTSAC 2 cut(s) 25, 718
TseI GCWGC 1 cut(s) 799
Tsp45I GTSAC 2 cut(s) 25, 718
TspDTI ATGAA 2 cut(s) 485, 503
TspGWI ACGGA 3 cut(s) 178, 553, 738
TspRI CASTG 2 cut(s) 723, 901
Tth111I GACNNNGTC 1 cut(s) 724
XapI RAATTY 2 cut(s) 581, 744
XbaI TCTAGA 2 cut(s) 637, 836
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 4 cut(s) 638, 768, 837, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.