Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003196

Physical Location & Seq

Genomic Coordinates Reverse (-)

8294094 .. 8295766

Gene Structure 1673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1098400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCACGCCAAGACTGACTCCGAGGTGACCAGCCTCGCGCCGTCGTCCCCCACCAGATCCCCAGGCCGCCGCCCAGTCTACTACGTCCAGAGCCCCTCGCGCGACTCCCACGATGGAGAGAAAACCACGACGTCTTTTCAGTCCACCCCCGTCATCAGTCCCTCCGGCTCCCCTCCCCACTCCCACTCCTCCACCGGCCACCACTCCCGCGAGTCCTCCTCCACCCGGTTTTCCGGGTCCCTCAAACCCGGATCCCGAAAGATCAACCCCAATGACGGGTCCCGCCACAACCGGAAGGGACATAAGCTGTGGAAGGAGCAAGCCGTTATCGAAGAGGAGGGCCTTCTGGAGGGAGAAGAGGGATCCAAAGGCTTTCCACGGCGGTGCTACTTTCCAGCTTTCGTTCTCGGTTTCTTCCTCCTCTTCTCCATGTTCGCTCTGATTCTCTGGGGCGCCAGTAGGCCCATGAAGCCCAAGATCACCATGAAGAGTGTGACGTTCGAACAGTTCAAGATTCAAGCGGGTTCGGATTCCACCGGCGTTTCCACTGATATGATCTCAATCAATTCCACAGTGAAGTTCACATTCCGCAACACCGGCACGTTCTTCGGAATGCACGTAATGCCGAAGCCTCTAGATCTATCATACTTCCAAATCACAATCGCCTCCGGAACAATTAAAAAATTTTATCAATCGAGGAAGAGTCAAAGAACGATCAGCGTTCGGGTATTTGGCGATAAAATACCGCTGTACGGTAGCGGCGCGAGCATGAACAGCGTGACGGGGACGACGGCGCTGCCGGTGCCGCTGCAGCTGAGCTTCGTGATCCGATCCAGAGCCTACGTTTTGGGGAAGTTGGTGAAGCCGAAATTCAACCGGCGGGTTGATTGTTCTGTGACTTTTGATCCCAAGAAGCTCAACGTTCCGATCAAGCTCACGAACTGCACCACTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

319

Amino Acids

35.14

Weight (kDa)

10.19

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45688 AT1G45688
fragaria_vesca	FvH4_1g16160 FvH4_1g16160 FvH4_1g16160 FvH4_2g34240 FvH4_2g34240
malus_domestica	MD02G1173700.v1.1 MD08G1098400.v1.1 MD15G1080900.v1.1
prunus_persica	Prupe.1G433700_v2.0.a1 Prupe.7G132000_v2.0.a1 Prupe.7G132000_v2.0.a1
pyrus_communis	pycom08g08020 pycom15g07540
rosa_chinensis	RchiOBHm_Chr2g0105841 RchiOBHm_Chr6g0308181
rosa_laevigata	RLG00000010661 RLG00000017464
rosa_multiflora	Rmu_sc0004386.1_g000024 Rmu_sc0005706.1_g000011 Rmu_sc0010389.1_g000008
rosa_roxburghii	Rroxscaffold_2G00137840 Rroxscaffold_7G00160380 Rroxscaffold_7G00160470
rosa_rugosa	Rorug02G0130800 Rorug06G0364500
rosa_samantha	Rh2AG181900 Rh2BG191700 Rh2CG186300 Rh2DG188300 Rh6AG473700 Rh6BG484500 Rh6CG489700 Rh6DG475700
rosa_wichuraiana	Rw2G014260 Rw6G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	452, 802
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	5 cut(s)	38, 100, 102, 210, 764
AccIII	TCCGGA	1 cut(s)	668
AclI	AACGTT	1 cut(s)	921
AclWI	GGATC	8 cut(s)	51, 246, 259, 357, 370, 820, 825, 899
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	2 cut(s)	683, 869
AcyI	GRCGYC	2 cut(s)	131, 453
AfaI	GTAC	1 cut(s)	752
AfiI	CCNNNNNNNGG	5 cut(s)	225, 275, 276, 349, 752
AgsI	TTSAA	3 cut(s)	511, 518, 874
AhlI	ACTAGT	1 cut(s)	950
AjnI	CCWGG	1 cut(s)	61
AleI	CACNNNNGTG	1 cut(s)	382
AluBI	AGCT	6 cut(s)	307, 398, 814, 819, 916, 934
AluI	AGCT	6 cut(s)	307, 398, 814, 819, 916, 934
AlwI	GGATC	8 cut(s)	51, 246, 259, 357, 370, 820, 825, 899
Aor13HI	TCCGGA	1 cut(s)	668
AoxI	GGCC	4 cut(s)	64, 196, 340, 461
ApeKI	GCWGC	3 cut(s)	796, 808, 811
ApoI	RAATTY	2 cut(s)	683, 869
AspLEI	GCGC	5 cut(s)	40, 102, 455, 764, 796
AspS9I	GGNCC	4 cut(s)	237, 279, 340, 462
AsuC2I	CCSGG	3 cut(s)	226, 235, 249
AsuHPI	GGTGA	3 cut(s)	37, 472, 871
AsuII	TTCGAA	1 cut(s)	501
AvaII	GGWCC	2 cut(s)	237, 279
BamHI	GGATCC	2 cut(s)	251, 362
BanI	GGYRCC	2 cut(s)	452, 802
BanII	GRGCYC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	783, 795, 823
BccI	CCATC	1 cut(s)	107
BceAI	ACGGC	4 cut(s)	25, 308, 395, 807
BcgI	CGANNNNNNTGC	4 cut(s)	589, 623, 778, 812
BciT130I	CCWGG	1 cut(s)	63
BcnI	CCSGG	3 cut(s)	226, 235, 249
BcuI	ACTAGT	1 cut(s)	950
BfaI	CTAG	2 cut(s)	635, 951
BfmI	CTRYAG	1 cut(s)	809
BfoI	RGCGCY	2 cut(s)	456, 797
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	7 cut(s)	67, 70, 760, 797, 806, 809, 812
BlpI	GCTNAGC	1 cut(s)	815
BlsI	GCNGC	7 cut(s)	68, 71, 761, 798, 807, 810, 813
Bme1390I	CCNGG	4 cut(s)	63, 226, 235, 249
Bme18I	GGWCC	2 cut(s)	237, 279
BmgT120I	GGNCC	4 cut(s)	237, 279, 340, 462
BmiI	GGNNCC	9 cut(s)	169, 238, 239, 253, 280, 281, 364, 454, 804
BmrFI	CCNGG	4 cut(s)	63, 226, 235, 249
BmrI	ACTGGG	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	368
Bpu1102I	GCTNAGC	1 cut(s)	815
Bpu14I	TTCGAA	1 cut(s)	501
BpuMI	CCSGG	3 cut(s)	226, 235, 249
BsaAI	YACGTR	1 cut(s)	619
BsaBI	GATNNNNATC	1 cut(s)	560
BsaHI	GRCGYC	2 cut(s)	131, 453
BsaJI	CCNNGG	3 cut(s)	21, 61, 377
BsaWI	WCCGGW	2 cut(s)	291, 668
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	5 cut(s)	225, 275, 276, 349, 752
Bse118I	RCCGGY	5 cut(s)	194, 536, 596, 799, 876
Bse1I	ACTGG	2 cut(s)	74, 456
Bse8I	GATNNNNATC	1 cut(s)	560
BseAI	TCCGGA	1 cut(s)	668
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	21, 61, 377
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	5 cut(s)	225, 275, 276, 349, 752
BseMII	CTCAG	1 cut(s)	806
BseNI	ACTGG	2 cut(s)	74, 456
BseRI	GAGGAG	4 cut(s)	178, 208, 350, 410
BseXI	GCAGC	3 cut(s)	783, 795, 823
BsgI	GTGCAG	1 cut(s)	928
Bsh1236I	CGCG	5 cut(s)	38, 100, 102, 210, 764
BshFI	GGCC	4 cut(s)	66, 198, 342, 463
BshNI	GGYRCC	2 cut(s)	452, 802
BslFI	GGGAC	6 cut(s)	31, 144, 223, 265, 312, 799
BslI	CCNNNNNNNGG	5 cut(s)	225, 275, 276, 349, 752
BsmFI	GGGAC	6 cut(s)	31, 144, 223, 265, 312, 799
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	4 cut(s)	66, 198, 342, 463
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp13I	TCCGGA	1 cut(s)	668
Bsp1720I	GCTNAGC	1 cut(s)	815
BspANI	GGCC	4 cut(s)	66, 198, 342, 463
BspCNI	CTCAG	1 cut(s)	807
BspEI	TCCGGA	1 cut(s)	668
BspFNI	CGCG	5 cut(s)	38, 100, 102, 210, 764
BspLI	GGNNCC	9 cut(s)	169, 238, 239, 253, 280, 281, 364, 454, 804
BspMAI	CTGCAG	1 cut(s)	813
BspPI	GGATC	8 cut(s)	51, 246, 259, 357, 370, 820, 825, 899
BspT104I	TTCGAA	1 cut(s)	501
BspT107I	GGYRCC	2 cut(s)	452, 802
BsrFI	RCCGGY	5 cut(s)	194, 536, 596, 799, 876
BsrI	ACTGG	2 cut(s)	74, 456
BssAI	RCCGGY	5 cut(s)	194, 536, 596, 799, 876
BssECI	CCNNGG	3 cut(s)	21, 61, 377
BssNI	GRCGYC	2 cut(s)	131, 453
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	507, 574, 755
Bst6I	CTCTTC	5 cut(s)	327, 351, 428, 482, 695
BstACI	GRCGYC	2 cut(s)	131, 453
BstAPI	GCANNNNNTGC	1 cut(s)	622
BstBAI	YACGTR	1 cut(s)	619
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	6, 321, 766
BstDEI	CTNAG	1 cut(s)	815
BstDSI	CCRYGG	1 cut(s)	377
BstEII	GGTNACC	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstFNI	CGCG	5 cut(s)	38, 100, 102, 210, 764
BstH2I	RGCGCY	2 cut(s)	456, 797
BstHHI	GCGC	5 cut(s)	40, 102, 455, 764, 796
BstMWI	GCNNNNNNNGC	9 cut(s)	99, 469, 597, 622, 765, 774, 802, 805, 811
BstNI	CCWGG	1 cut(s)	63
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	4 cut(s)	61, 224, 233, 247
BstSFI	CTRYAG	1 cut(s)	809
BstUI	CGCG	5 cut(s)	38, 100, 102, 210, 764
BstV1I	GCAGC	3 cut(s)	783, 795, 823
BstX2I	RGATCY	4 cut(s)	56, 251, 362, 637
BstYI	RGATCY	4 cut(s)	56, 251, 362, 637
BsuRI	GGCC	4 cut(s)	66, 198, 342, 463
BtgI	CCRYGG	1 cut(s)	377
BtsIMutI	CAGTG	2 cut(s)	546, 579
Cac8I	GCNNGC	3 cut(s)	6, 321, 766
CfoI	GCGC	5 cut(s)	40, 102, 455, 764, 796
Cfr10I	RCCGGY	5 cut(s)	194, 536, 596, 799, 876
Cfr13I	GGNCC	4 cut(s)	237, 279, 340, 462
Csp6I	GTAC	1 cut(s)	751
CviAII	CATG	4 cut(s)	430, 466, 484, 769
CviQI	GTAC	1 cut(s)	751
DdeI	CTNAG	1 cut(s)	815
DinI	GGCGCC	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	5 cut(s)	327, 351, 428, 482, 695
EarI	CTCTTC	5 cut(s)	327, 351, 428, 482, 695
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	237, 279
Eco91I	GGTNACC	1 cut(s)	25
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoO109I	RGGNCCY	3 cut(s)	237, 279, 340
EcoO65I	GGTNACC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	95
EgeI	GGCGCC	1 cut(s)	454
EheI	GGCGCC	1 cut(s)	454
FaeI	CATG	4 cut(s)	433, 469, 487, 772
FaiI	YATR	7 cut(s)	303, 431, 467, 485, 554, 646, 770
FaqI	GGGAC	6 cut(s)	31, 144, 223, 265, 312, 799
FatI	CATG	4 cut(s)	429, 465, 483, 768
FauI	CCCGC	4 cut(s)	215, 290, 514, 873
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	7 cut(s)	67, 70, 760, 797, 806, 809, 812
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	7 cut(s)	67, 70, 760, 797, 806, 809, 812
FspBI	CTAG	2 cut(s)	635, 951
GlaI	GCGC	5 cut(s)	39, 101, 454, 763, 795
GluI	GCNGC	7 cut(s)	67, 70, 760, 797, 806, 809, 812
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	2 cut(s)	456, 797
HaeIII	GGCC	4 cut(s)	66, 198, 342, 463
HhaI	GCGC	5 cut(s)	40, 102, 455, 764, 796
Hin1I	GRCGYC	2 cut(s)	131, 453
Hin1II	CATG	4 cut(s)	433, 469, 487, 772
Hin6I	GCGC	5 cut(s)	38, 100, 453, 762, 794
HinP1I	GCGC	5 cut(s)	38, 100, 453, 762, 794
HinfI	GANTC	7 cut(s)	17, 104, 212, 442, 514, 530, 703
HphI	GGTGA	3 cut(s)	37, 472, 871
Hpy166II	GTNNAC	3 cut(s)	79, 144, 582
Hpy188I	TCNGA	6 cut(s)	22, 441, 529, 611, 830, 927
Hpy188III	TCNNGA	9 cut(s)	88, 255, 347, 511, 635, 669, 823, 834, 937
Hpy8I	GTNNAC	3 cut(s)	79, 144, 582
Hpy99I	CGWCG	3 cut(s)	46, 133, 793
HpyAV	CCTTC	3 cut(s)	289, 307, 353
HpyCH4III	ACNGT	3 cut(s)	507, 574, 755
HpyCH4IV	ACGT	7 cut(s)	84, 131, 497, 602, 618, 843, 921
HpyCH4V	TGCA	4 cut(s)	4, 616, 811, 945
HpyF10VI	GCNNNNNNNGC	9 cut(s)	99, 469, 597, 622, 765, 774, 802, 805, 811
HpyF3I	CTNAG	1 cut(s)	815
HpySE526I	ACGT	7 cut(s)	84, 131, 497, 602, 618, 843, 921
Hsp92I	GRCGYC	2 cut(s)	131, 453
Hsp92II	CATG	4 cut(s)	433, 469, 487, 772
HspAI	GCGC	5 cut(s)	38, 100, 453, 762, 794
KasI	GGCGCC	1 cut(s)	452
KflI	GGGWCCC	2 cut(s)	237, 279
Kpn2I	TCCGGA	1 cut(s)	668
LmnI	GCTCC	2 cut(s)	173, 316
Lsp1109I	GCAGC	3 cut(s)	783, 795, 823
MaeI	CTAG	2 cut(s)	635, 951
MaeII	ACGT	7 cut(s)	84, 131, 497, 602, 618, 843, 921
MaeIII	GTNAC	4 cut(s)	25, 493, 778, 895
MboII	GAAGA	7 cut(s)	344, 368, 406, 415, 499, 598, 712
MflI	RGATCY	4 cut(s)	56, 251, 362, 637
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	4 cut(s)	565, 675, 683, 869
Mly113I	GGCGCC	1 cut(s)	453
MlyI	GAGTC	4 cut(s)	11, 98, 221, 712
MroI	TCCGGA	1 cut(s)	668
MseI	TTAA	1 cut(s)	678
MslI	CAYNNNNRTG	2 cut(s)	382, 551
MspA1I	CMGCKG	3 cut(s)	748, 808, 814
MspR9I	CCNGG	4 cut(s)	63, 226, 235, 249
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	5 cut(s)	38, 100, 102, 210, 764
MwoI	GCNNNNNNNGC	9 cut(s)	99, 469, 597, 622, 765, 774, 802, 805, 811
NarI	GGCGCC	1 cut(s)	453
NciI	CCSGG	3 cut(s)	226, 235, 249
NlaIII	CATG	4 cut(s)	433, 469, 487, 772
NlaIV	GGNNCC	9 cut(s)	169, 238, 239, 253, 280, 281, 364, 454, 804
NmuCI	GTSAC	4 cut(s)	25, 493, 778, 895
NspV	TTCGAA	1 cut(s)	501
OliI	CACNNNNGTG	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	615
PctI	GAATGC	1 cut(s)	618
PfeI	GAWTC	3 cut(s)	442, 514, 530
PkrI	GCNGC	7 cut(s)	68, 71, 761, 798, 807, 810, 813
PleI	GAGTC	4 cut(s)	11, 98, 220, 711
PluTI	GGCGCC	1 cut(s)	456
PpsI	GAGTC	4 cut(s)	11, 98, 220, 711
Ppu21I	YACGTR	1 cut(s)	619
PpuMI	RGGWCCY	2 cut(s)	237, 279
Psp1406I	AACGTT	1 cut(s)	921
Psp5II	RGGWCCY	2 cut(s)	237, 279
Psp6I	CCWGG	1 cut(s)	61
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	9 cut(s)	169, 238, 239, 253, 280, 281, 364, 454, 804
PspPI	GGNCC	4 cut(s)	237, 279, 340, 462
PspPPI	RGGWCCY	2 cut(s)	237, 279
PstI	CTGCAG	1 cut(s)	813
PsuI	RGATCY	4 cut(s)	56, 251, 362, 637
PvuII	CAGCTG	1 cut(s)	814
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
RseI	CAYNNNNRTG	2 cut(s)	382, 551
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	7 cut(s)	67, 70, 760, 797, 806, 809, 812
Sau96I	GGNCC	4 cut(s)	237, 279, 340, 462
SchI	GAGTC	4 cut(s)	11, 98, 221, 712
ScrFI	CCNGG	4 cut(s)	63, 226, 235, 249
SduI	GDGCHC	1 cut(s)	95
SfcI	CTRYAG	1 cut(s)	809
SfoI	GGCGCC	1 cut(s)	454
SfuI	TTCGAA	1 cut(s)	501
SgrAI	CRCCGGYG	1 cut(s)	536
SinI	GGWCC	2 cut(s)	237, 279
SmiMI	CAYNNNNRTG	2 cut(s)	382, 551
SpeI	ACTAGT	1 cut(s)	950
Sse9I	AATT	4 cut(s)	565, 675, 683, 869
SspDI	GGCGCC	1 cut(s)	452
SspMI	CTAG	2 cut(s)	635, 951
StyD4I	CCNGG	4 cut(s)	61, 224, 233, 247
TaaI	ACNGT	3 cut(s)	507, 574, 755
TaiI	ACGT	7 cut(s)	87, 134, 500, 605, 621, 846, 924
TaqI	TCGA	3 cut(s)	330, 501, 695
TasI	AATT	4 cut(s)	565, 675, 683, 869
TauI	GCSGC	4 cut(s)	69, 72, 762, 808
TfiI	GAWTC	3 cut(s)	442, 514, 530
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	2 cut(s)	553, 579
TseFI	GTSAC	4 cut(s)	25, 493, 778, 895
TseI	GCWGC	3 cut(s)	796, 808, 811
Tsp45I	GTSAC	4 cut(s)	25, 493, 778, 895
TspDTI	ATGAA	3 cut(s)	482, 500, 785
TspRI	CASTG	2 cut(s)	553, 579
VpaK11BI	GGWCC	2 cut(s)	237, 279
XagI	CCTNNNNNAGG	1 cut(s)	347
XapI	RAATTY	2 cut(s)	683, 869
XbaI	TCTAGA	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	2 cut(s)	635, 951
ZraI	GACGTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.