MD15G1080900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
5531471 .. 5533131
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1080900.v1.1.491

Sequence Viewer

Length: 957 bp
ATGCACGCCAAGACCGACTCCGAGGTGACCAGCCTCGCGCCGTCGTCCCCCACCAGATCCCCAGGCCGCCGCCCCGTCTACTACGTCCAGAGCCCCTCGCGCGACTCCCACGATGGAGAAAAGACCGCCACGTCGTTTCAGTCCACCCCTGTCATCAGCCCTTCCGGCTCCCCTCCCCACTCCCACTCCTCCGTCGGCCGCCACTCCCGCGAGTCCTCCTCCACACGGTTCTCCGGGTCACTCAAACCCGGATCCCGAAAGATCAACCCCAATGACGGGTCCCGCCACCACCGGAAAGGTCAGAAGCCGTGGAAGGAGCAAGCCGTCATTGAAGAAGAAGGCCTTCTGGAGGGAGAAGAGCGATCCAAAGGCTTCCCTCGGCGGTGCTACTTCCCGGCTTTCGTTCTCGGCTTCTTCCTCCTCTTCACCATGTTCGCTCTGATTCTCTGGGGCGCCAGTAAGCCCATGAAGCCCAAGATCACCATGAAGAGCGTGACGTTCGAACAGTTCAAGATTCAAGCGGGTTCGGATTCCACCGGCGTCTCCACTGATATGATCTCAGTCAATTCCACAGTCAAGTTCACATTTCGCAACACCGGCACGTTCTTCGGAATGCACGTAATGTCGAAGACTCTAGATCTATCGTACTTCCAAATCACAATCGCCTCCGGAACCATCAAGAAGTTTTATCAGTCGAGGAAGAGCCAGAGATCGATCAGCGTTCAGTTATTCGGCGAAAAAATCCCGCTGTACGGGAGCGGCGCAAGCATCAACAGCGCGACGGGGACGACGGCGCTGCCGGTGCCGCTGCAGCTGAACTTCGTGATCCGATCGAAAGCCTACGTTTTGGGGAAATTGGTGAAGCCGAAATTCAACCGGCGGGTTTATTGTTCTGTAACTTTCGATCCCAAAAAGCTCAACGTTCCGATCAAGCTAAACAACTGCACCACTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

319

Amino Acids

35.19

Weight (kDa)

10.2

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 130
AccB1I GGYRCC 2 cut(s) 452, 802
AccBSI CCGCTC 1 cut(s) 759
AccI GTMKAC 1 cut(s) 78
AccII CGCG 5 cut(s) 38, 100, 102, 210, 779
AccIII TCCGGA 1 cut(s) 668
AclI AACGTT 1 cut(s) 921
AclWI GGATC 6 cut(s) 51, 246, 259, 357, 820, 899
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 1 cut(s) 869
AcyI GRCGYC 2 cut(s) 453, 540
AfaI GTAC 2 cut(s) 647, 752
AfiI CCNNNNNNNGG 5 cut(s) 225, 275, 276, 349, 752
AgsI TTSAA 4 cut(s) 332, 511, 518, 874
AhlI ACTAGT 1 cut(s) 950
AjiI CACGTC 1 cut(s) 132
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 3 cut(s) 814, 916, 934
AluI AGCT 3 cut(s) 814, 916, 934
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 6 cut(s) 51, 246, 259, 357, 820, 899
Aor13HI TCCGGA 1 cut(s) 668
AoxI GGCC 3 cut(s) 64, 196, 340
ApeKI GCWGC 3 cut(s) 796, 808, 811
ApoI RAATTY 1 cut(s) 869
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 6 cut(s) 40, 102, 455, 764, 779, 796
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 3 cut(s) 235, 249, 395
AsuHPI GGTGA 4 cut(s) 37, 418, 472, 871
AsuII TTCGAA 1 cut(s) 501
AvaII GGWCC 1 cut(s) 279
BamHI GGATCC 1 cut(s) 251
BanI GGYRCC 2 cut(s) 452, 802
BanII GRGCYC 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 635
BbvI GCAGC 3 cut(s) 783, 795, 823
BccI CCATC 2 cut(s) 107, 683
BceAI ACGGC 4 cut(s) 25, 292, 308, 807
BcgI CGANNNNNNTGC 4 cut(s) 589, 623, 778, 812
BciT130I CCWGG 1 cut(s) 63
BcnI CCSGG 3 cut(s) 235, 249, 395
BcoDI GTCTC 1 cut(s) 547
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 2 cut(s) 635, 951
BfmI CTRYAG 1 cut(s) 809
BfoI RGCGCY 2 cut(s) 456, 797
BglI GCCNNNNNGGC 1 cut(s) 165
BglII AGATCT 1 cut(s) 637
BisI GCNGC 8 cut(s) 67, 70, 199, 760, 797, 806, 809, 812
BlsI GCNGC 8 cut(s) 68, 71, 200, 761, 798, 807, 810, 813
Bme1390I CCNGG 4 cut(s) 63, 235, 249, 395
Bme18I GGWCC 1 cut(s) 279
BmgBI CACGTC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 7 cut(s) 169, 253, 280, 281, 454, 673, 804
BmrFI CCNGG 4 cut(s) 63, 235, 249, 395
BmsI GCATC 1 cut(s) 777
BpiI GAAGAC 1 cut(s) 635
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 1 cut(s) 368
Bpu14I TTCGAA 1 cut(s) 501
BpuMI CCSGG 3 cut(s) 235, 249, 395
Bsa29I ATCGAT 1 cut(s) 713
BsaAI YACGTR 1 cut(s) 619
BsaHI GRCGYC 2 cut(s) 453, 540
BsaJI CCNNGG 4 cut(s) 21, 61, 308, 377
BsaWI WCCGGW 2 cut(s) 291, 668
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 5 cut(s) 225, 275, 276, 349, 752
Bse118I RCCGGY 4 cut(s) 536, 596, 799, 876
Bse1I ACTGG 1 cut(s) 456
BseAI TCCGGA 1 cut(s) 668
BseBI CCWGG 1 cut(s) 63
BseCI ATCGAT 1 cut(s) 713
BseDI CCNNGG 4 cut(s) 21, 61, 308, 377
BseLI CCNNNNNNNGG 5 cut(s) 225, 275, 276, 349, 752
BseMII CTCAG 1 cut(s) 573
BseNI ACTGG 1 cut(s) 456
BseRI GAGGAG 3 cut(s) 178, 208, 410
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 3 cut(s) 783, 795, 823
BsgI GTGCAG 1 cut(s) 928
Bsh1236I CGCG 5 cut(s) 38, 100, 102, 210, 779
Bsh1285I CGRYCG 2 cut(s) 199, 833
BshFI GGCC 3 cut(s) 66, 198, 342
BshNI GGYRCC 2 cut(s) 452, 802
BshVI ATCGAT 1 cut(s) 713
BsiEI CGRYCG 2 cut(s) 199, 833
BslFI GGGAC 3 cut(s) 31, 265, 799
BslI CCNNNNNNNGG 5 cut(s) 225, 275, 276, 349, 752
BsmAI GTCTC 1 cut(s) 547
BsmBI CGTCTC 1 cut(s) 547
BsmFI GGGAC 3 cut(s) 31, 265, 799
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 3 cut(s) 66, 198, 342
Bsp119I TTCGAA 1 cut(s) 501
Bsp1286I GDGCHC 1 cut(s) 95
Bsp13I TCCGGA 1 cut(s) 668
BspANI GGCC 3 cut(s) 66, 198, 342
BspCNI CTCAG 1 cut(s) 572
BspDI ATCGAT 1 cut(s) 713
BspEI TCCGGA 1 cut(s) 668
BspFNI CGCG 5 cut(s) 38, 100, 102, 210, 779
BspLI GGNNCC 7 cut(s) 169, 253, 280, 281, 454, 673, 804
BspMAI CTGCAG 1 cut(s) 813
BspPI GGATC 6 cut(s) 51, 246, 259, 357, 820, 899
BspQI GCTCTTC 3 cut(s) 351, 482, 695
BspT104I TTCGAA 1 cut(s) 501
BspT107I GGYRCC 2 cut(s) 452, 802
BsrBI CCGCTC 1 cut(s) 759
BsrFI RCCGGY 4 cut(s) 536, 596, 799, 876
BsrI ACTGG 1 cut(s) 456
BssAI RCCGGY 4 cut(s) 536, 596, 799, 876
BssECI CCNNGG 4 cut(s) 21, 61, 308, 377
BssNI GRCGYC 2 cut(s) 453, 540
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 3 cut(s) 228, 507, 574
Bst6I CTCTTC 4 cut(s) 351, 428, 482, 695
BstACI GRCGYC 2 cut(s) 453, 540
BstBAI YACGTR 1 cut(s) 619
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 3 cut(s) 6, 321, 766
BstDEI CTNAG 1 cut(s) 559
BstDSI CCRYGG 1 cut(s) 308
BstEII GGTNACC 1 cut(s) 25
BstENI CCTNNNNNAGG 1 cut(s) 347
BstFNI CGCG 5 cut(s) 38, 100, 102, 210, 779
BstH2I RGCGCY 2 cut(s) 456, 797
BstHHI GCGC 6 cut(s) 40, 102, 455, 764, 779, 796
BstMAI GTCTC 1 cut(s) 547
BstMCI CGRYCG 2 cut(s) 199, 833
BstNI CCWGG 1 cut(s) 63
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 4 cut(s) 61, 233, 247, 393
BstSFI CTRYAG 1 cut(s) 809
BstUI CGCG 5 cut(s) 38, 100, 102, 210, 779
BstV1I GCAGC 3 cut(s) 783, 795, 823
BstV2I GAAGAC 1 cut(s) 635
BstX2I RGATCY 3 cut(s) 56, 251, 637
BstYI RGATCY 3 cut(s) 56, 251, 637
BstZI CGGCCG 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 713
BsuRI GGCC 3 cut(s) 66, 198, 342
BsuTUI ATCGAT 1 cut(s) 713
BtgI CCRYGG 1 cut(s) 308
BtrI CACGTC 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 3 cut(s) 6, 321, 766
CfoI GCGC 6 cut(s) 40, 102, 455, 764, 779, 796
Cfr10I RCCGGY 4 cut(s) 536, 596, 799, 876
Cfr13I GGNCC 1 cut(s) 279
ClaI ATCGAT 1 cut(s) 713
CseI GACGC 1 cut(s) 529
Csp6I GTAC 2 cut(s) 646, 751
CviAII CATG 3 cut(s) 430, 466, 484
CviQI GTAC 2 cut(s) 646, 751
DdeI CTNAG 1 cut(s) 559
DinI GGCGCC 1 cut(s) 454
DrdI GACNNNNNNGTC 1 cut(s) 130
DseDI GACNNNNNNGTC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 196
EagI CGGCCG 1 cut(s) 196
Eam1104I CTCTTC 4 cut(s) 351, 428, 482, 695
EarI CTCTTC 4 cut(s) 351, 428, 482, 695
EclXI CGGCCG 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 279
Eco52I CGGCCG 1 cut(s) 196
Eco91I GGTNACC 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 279
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 95
EgeI GGCGCC 1 cut(s) 454
EheI GGCGCC 1 cut(s) 454
Esp3I CGTCTC 1 cut(s) 547
FaeI CATG 3 cut(s) 433, 469, 487
FaiI YATR 4 cut(s) 431, 467, 485, 554
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 3 cut(s) 31, 265, 799
FatI CATG 3 cut(s) 429, 465, 483
FauI CCCGC 5 cut(s) 215, 290, 514, 753, 873
FblI GTMKAC 1 cut(s) 78
Fnu4HI GCNGC 8 cut(s) 67, 70, 199, 760, 797, 806, 809, 812
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 8 cut(s) 67, 70, 199, 760, 797, 806, 809, 812
FspBI CTAG 2 cut(s) 635, 951
GlaI GCGC 6 cut(s) 39, 101, 454, 763, 778, 795
GluI GCNGC 8 cut(s) 67, 70, 199, 760, 797, 806, 809, 812
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 2 cut(s) 456, 797
HaeIII GGCC 3 cut(s) 66, 198, 342
HgaI GACGC 1 cut(s) 529
HhaI GCGC 6 cut(s) 40, 102, 455, 764, 779, 796
Hin1I GRCGYC 2 cut(s) 453, 540
Hin1II CATG 3 cut(s) 433, 469, 487
Hin6I GCGC 6 cut(s) 38, 100, 453, 762, 777, 794
HinP1I GCGC 6 cut(s) 38, 100, 453, 762, 777, 794
HinfI GANTC 7 cut(s) 17, 104, 212, 442, 514, 530, 631
HphI GGTGA 4 cut(s) 37, 418, 472, 871
Hpy166II GTNNAC 3 cut(s) 79, 144, 582
Hpy188I TCNGA 7 cut(s) 22, 303, 441, 529, 611, 830, 927
Hpy188III TCNNGA 8 cut(s) 88, 255, 347, 511, 635, 669, 679, 823
Hpy8I GTNNAC 3 cut(s) 79, 144, 582
Hpy99I CGWCG 5 cut(s) 46, 136, 197, 784, 793
HpyAV CCTTC 4 cut(s) 171, 307, 332, 353
HpyCH4III ACNGT 3 cut(s) 228, 507, 574
HpyCH4IV ACGT 7 cut(s) 84, 131, 497, 602, 618, 843, 921
HpyCH4V TGCA 4 cut(s) 4, 616, 811, 945
HpyF3I CTNAG 1 cut(s) 559
HpySE526I ACGT 7 cut(s) 84, 131, 497, 602, 618, 843, 921
Hsp92I GRCGYC 2 cut(s) 453, 540
Hsp92II CATG 3 cut(s) 433, 469, 487
HspAI GCGC 6 cut(s) 38, 100, 453, 762, 777, 794
KasI GGCGCC 1 cut(s) 452
KflI GGGWCCC 1 cut(s) 279
Kpn2I TCCGGA 1 cut(s) 668
LguI GCTCTTC 3 cut(s) 351, 482, 695
LmnI GCTCC 3 cut(s) 173, 316, 756
Lsp1109I GCAGC 3 cut(s) 783, 795, 823
LweI GCATC 1 cut(s) 777
MaeI CTAG 2 cut(s) 635, 951
MaeII ACGT 7 cut(s) 84, 131, 497, 602, 618, 843, 921
MaeIII GTNAC 4 cut(s) 25, 237, 493, 895
MbiI CCGCTC 1 cut(s) 759
MboII GAAGA 9 cut(s) 344, 347, 368, 406, 415, 499, 598, 640, 712
MflI RGATCY 3 cut(s) 56, 251, 637
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 3 cut(s) 565, 854, 869
Mly113I GGCGCC 1 cut(s) 453
MlyI GAGTC 4 cut(s) 11, 98, 221, 625
MroI TCCGGA 1 cut(s) 668
MroXI GAANNNNTTC 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 551
MspA1I CMGCKG 3 cut(s) 748, 808, 814
MspR9I CCNGG 4 cut(s) 63, 235, 249, 395
Mva1269I GAATGC 1 cut(s) 618
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 5 cut(s) 38, 100, 102, 210, 779
NarI GGCGCC 1 cut(s) 453
NciI CCSGG 3 cut(s) 235, 249, 395
NlaIII CATG 3 cut(s) 433, 469, 487
NlaIV GGNNCC 7 cut(s) 169, 253, 280, 281, 454, 673, 804
NmeAIII GCCGAG 2 cut(s) 358, 387
NmuCI GTSAC 3 cut(s) 25, 237, 493
NspV TTCGAA 1 cut(s) 501
PceI AGGCCT 1 cut(s) 342
PciSI GCTCTTC 3 cut(s) 351, 482, 695
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 615
PctI GAATGC 1 cut(s) 618
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 3 cut(s) 442, 514, 530
PkrI GCNGC 8 cut(s) 68, 71, 200, 761, 798, 807, 810, 813
Ple19I CGATCG 1 cut(s) 833
PleI GAGTC 4 cut(s) 11, 98, 220, 625
PluTI GGCGCC 1 cut(s) 456
PpsI GAGTC 4 cut(s) 11, 98, 220, 625
Ppu21I YACGTR 1 cut(s) 619
PpuMI RGGWCCY 1 cut(s) 279
Psp1406I AACGTT 1 cut(s) 921
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 61
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 7 cut(s) 169, 253, 280, 281, 454, 673, 804
PspPI GGNCC 1 cut(s) 279
PspPPI RGGWCCY 1 cut(s) 279
PstI CTGCAG 1 cut(s) 813
PsuI RGATCY 3 cut(s) 56, 251, 637
PvuI CGATCG 1 cut(s) 833
PvuII CAGCTG 1 cut(s) 814
RsaI GTAC 2 cut(s) 647, 752
RsaNI GTAC 2 cut(s) 646, 751
RseI CAYNNNNRTG 1 cut(s) 551
SapI GCTCTTC 3 cut(s) 351, 482, 695
SatI GCNGC 8 cut(s) 67, 70, 199, 760, 797, 806, 809, 812
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 4 cut(s) 11, 98, 221, 625
ScrFI CCNGG 4 cut(s) 63, 235, 249, 395
SduI GDGCHC 1 cut(s) 95
SfaNI GCATC 1 cut(s) 777
SfcI CTRYAG 1 cut(s) 809
SfoI GGCGCC 1 cut(s) 454
SfuI TTCGAA 1 cut(s) 501
SgrAI CRCCGGYG 1 cut(s) 536
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 551
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 3 cut(s) 565, 854, 869
SseBI AGGCCT 1 cut(s) 342
SspDI GGCGCC 1 cut(s) 452
SspMI CTAG 2 cut(s) 635, 951
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 4 cut(s) 61, 233, 247, 393
TaaI ACNGT 3 cut(s) 228, 507, 574
TaiI ACGT 7 cut(s) 87, 134, 500, 605, 621, 846, 924
TaqI TCGA 6 cut(s) 501, 626, 695, 713, 833, 903
TaqII GACCGA 1 cut(s) 29
TasI AATT 3 cut(s) 565, 854, 869
TauI GCSGC 5 cut(s) 69, 72, 201, 762, 808
TfiI GAWTC 3 cut(s) 442, 514, 530
TscAI CASTG 1 cut(s) 553
TseFI GTSAC 3 cut(s) 25, 237, 493
TseI GCWGC 3 cut(s) 796, 808, 811
Tsp45I GTSAC 3 cut(s) 25, 237, 493
TspDTI ATGAA 2 cut(s) 482, 500
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 1 cut(s) 869
XbaI TCTAGA 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 635, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.