FvH4_1g16160

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003196
Physical Location & Seq
Reverse (-)
9247698 .. 9249562
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g16160.t3

Sequence Viewer

Length: 957 bp
ATGTCGGTGCTGGCCAAGACTGACTCGGAGGTGAGCAGCCTCAGTCACTCATCTCCGCCGCGCTCGCCACGTAGAAGCAGCGAGCGCGGCGCAGTTTACTACGTGCAGAGCCCCTCACGGGACTCGCACGATGGCGAGAAGACCACCAACTCGTTCCACTCTAGTCCAATGGGATCGCCGCCTCACTCCCACTCCAACTCCTCCCTTGGCCCCCACTCGCGTGAGTCCGCCTCCACCAGGTTTTCGGGATCGCGGAGCATCAAGCAAAACAACAGTGGGCCCCAGCGCAAGGGGTGGAGGCCGTGGAAGGACCAATTCGACTCCATTGAAGAAGAGGGCCTTCTCGACGATGACAACGAAAGCGATGGTCTCTCCCGCCGATGTTACTTTCTCGCTTTCATTTTTGGCTTCTTTGCGCTTTTTACTGTGTTCTCTTTGATTCTGTGGGGTGCGAGTAGGGCACAGAAGCCTGTTATCACTATGAAGAGCATTAGATTTGATCAATTTGTGGTTCAAGCCGGAGAAGATTTCTCAGGTGTGGCTACCGACATGGTGTCCATGAATTCCACCGTGAAATTCACATTTCGCAACACTGCTACATTTTTCGGTGTCCATGTCAAATCAATGTCTCTTGATCTCTCATTTTTCGAGCTCACCGTAGCCAGCGGAACGACAAATAAATTTTACCAATCGAGAAAGAGTCAGAGACCAATTACAGTGAATTTGATAGGGAACAAAATTCCACTCTACGGTGGTGGAGCAAATTTGGGAAGCTTGAATGGTGCACCCATTCAGCCACTAACACTGGCACTGATGTTCGAGGTGAGATCGAGAGCTAATGTTTTGGGAAAACTGGTGCGGCCCAAGTTCAACAGGAGAGTCGACTGCACTGTGATTATGGATGCTAAGAAGATGAATGTGGCCATTGCCTTGAAGAACAAGTGCACTTACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

319

Amino Acids

35.24

Weight (kDa)

9.87

Isoelectric Point (pI)

58.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 882
AccII CGCG 4 cut(s) 61, 87, 220, 253
AciI CCGC 9 cut(s) 56, 59, 87, 179, 228, 253, 376, 666, 859
AclWI GGATC 2 cut(s) 181, 256
AcoI YGGCCR 2 cut(s) 12, 921
AcsI RAATTY 6 cut(s) 562, 575, 680, 721, 738, 763
AfiI CCNNNNNNNGG 4 cut(s) 118, 237, 289, 749
AgsI TTSAA 5 cut(s) 329, 515, 778, 871, 934
AhdI GACNNNNNGTC 1 cut(s) 553
AjnI CCWGG 1 cut(s) 236
AleI CACNNNNGTG 1 cut(s) 219
AluBI AGCT 3 cut(s) 652, 774, 836
AluI AGCT 3 cut(s) 652, 774, 836
Alw21I GWGCWC 3 cut(s) 654, 787, 947
Alw26I GTCTC 3 cut(s) 374, 633, 700
Alw44I GTGCAC 2 cut(s) 783, 943
AlwI GGATC 2 cut(s) 181, 256
AoxI GGCC 7 cut(s) 12, 208, 278, 299, 337, 860, 921
ApaI GGGCCC 1 cut(s) 282
ApaLI GTGCAC 2 cut(s) 783, 943
ApeKI GCWGC 2 cut(s) 36, 78
ApoI RAATTY 6 cut(s) 562, 575, 680, 721, 738, 763
AspLEI GCGC 5 cut(s) 63, 87, 92, 288, 418
AspS9I GGNCC 6 cut(s) 209, 278, 279, 310, 337, 861
AsuHPI GGTGA 3 cut(s) 43, 646, 835
AvaII GGWCC 1 cut(s) 310
BaeGI GKGCMC 4 cut(s) 282, 463, 787, 947
BalI TGGCCA 2 cut(s) 14, 923
BanII GRGCYC 3 cut(s) 113, 282, 654
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 3 cut(s) 654, 787, 947
BbvI GCAGC 2 cut(s) 48, 90
BccI CCATC 2 cut(s) 125, 359
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 238
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 3 cut(s) 374, 633, 700
BfaI CTAG 1 cut(s) 162
BisI GCNGC 6 cut(s) 37, 59, 79, 88, 179, 860
BlsI GCNGC 6 cut(s) 38, 60, 80, 89, 180, 861
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 310
BmeRI GACNNNNNGTC 1 cut(s) 553
BmgT120I GGNCC 6 cut(s) 209, 278, 279, 310, 337, 861
BmiI GGNNCC 3 cut(s) 211, 280, 281
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 267, 892
BpiI GAAGAC 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BsaAI YACGTR 2 cut(s) 71, 103
BsaI GGTCTC 2 cut(s) 374, 700
BsaJI CCNNGG 2 cut(s) 205, 302
BsaXI ACNNNNNCTCC 4 cut(s) 176, 182, 206, 212
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 237, 289, 749
Bse1I ACTGG 3 cut(s) 810, 858, 952
Bse3DI GCAATG 1 cut(s) 924
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 205, 302
BseGI GGATG 1 cut(s) 907
BseLI CCNNNNNNNGG 4 cut(s) 118, 237, 289, 749
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 2 cut(s) 55, 546
BseNI ACTGG 3 cut(s) 810, 858, 952
BseRI GAGGAG 1 cut(s) 190
BseSI GKGCMC 4 cut(s) 282, 463, 787, 947
BseXI GCAGC 2 cut(s) 48, 90
BseYI CCCAGC 1 cut(s) 282
BsgI GTGCAG 2 cut(s) 125, 871
Bsh1236I CGCG 4 cut(s) 61, 87, 220, 253
BshFI GGCC 7 cut(s) 14, 210, 280, 301, 339, 862, 923
BsiHKAI GWGCWC 3 cut(s) 654, 787, 947
BsiSI CCGG 1 cut(s) 519
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 4 cut(s) 118, 237, 289, 749
BsmAI GTCTC 3 cut(s) 374, 633, 700
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 7 cut(s) 14, 210, 280, 301, 339, 862, 923
Bso31I GGTCTC 2 cut(s) 374, 700
Bsp120I GGGCCC 1 cut(s) 278
Bsp1286I GDGCHC 6 cut(s) 113, 282, 463, 654, 787, 947
Bsp143I GATC 5 cut(s) 173, 248, 499, 634, 827
BspACI CCGC 9 cut(s) 56, 59, 87, 179, 228, 253, 376, 666, 859
BspANI GGCC 7 cut(s) 14, 210, 280, 301, 339, 862, 923
BspCNI CTCAG 2 cut(s) 54, 545
BspFNI CGCG 4 cut(s) 61, 87, 220, 253
BspLI GGNNCC 3 cut(s) 211, 280, 281
BspPI GGATC 2 cut(s) 181, 256
BspQI GCTCTTC 1 cut(s) 479
BspTNI GGTCTC 2 cut(s) 374, 700
BsrDI GCAATG 1 cut(s) 924
BsrI ACTGG 3 cut(s) 810, 858, 952
BssECI CCNNGG 2 cut(s) 205, 302
BssMI GATC 5 cut(s) 173, 248, 499, 634, 827
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 7 cut(s) 275, 427, 571, 658, 718, 752, 892
Bst6I CTCTTC 2 cut(s) 327, 479
BstBAI YACGTR 2 cut(s) 71, 103
BstC8I GCNNGC 4 cut(s) 12, 65, 83, 664
BstDEI CTNAG 3 cut(s) 41, 532, 906
BstDSI CCRYGG 1 cut(s) 302
BstENI CCTNNNNNAGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 907
BstFNI CGCG 4 cut(s) 61, 87, 220, 253
BstHHI GCGC 5 cut(s) 63, 87, 92, 288, 418
BstKTI GATC 5 cut(s) 176, 251, 502, 637, 830
BstMAI GTCTC 3 cut(s) 374, 633, 700
BstMBI GATC 5 cut(s) 173, 248, 499, 634, 827
BstMWI GCNNNNNNNGC 4 cut(s) 64, 84, 87, 458
BstNI CCWGG 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 236
BstSLI GKGCMC 4 cut(s) 282, 463, 787, 947
BstUI CGCG 4 cut(s) 61, 87, 220, 253
BstV1I GCAGC 2 cut(s) 48, 90
BstV2I GAAGAC 1 cut(s) 146
BsuRI GGCC 7 cut(s) 14, 210, 280, 301, 339, 862, 923
BtgI CCRYGG 1 cut(s) 302
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 1 cut(s) 907
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 6 cut(s) 280, 591, 723, 803, 809, 888
Cac8I GCNNGC 4 cut(s) 12, 65, 83, 664
CfoI GCGC 5 cut(s) 63, 87, 92, 288, 418
Cfr13I GGNCC 6 cut(s) 209, 278, 279, 310, 337, 861
CsiI ACCWGGT 1 cut(s) 236
CviAII CATG 3 cut(s) 550, 559, 614
DdeI CTNAG 3 cut(s) 41, 532, 906
DpnI GATC 5 cut(s) 175, 250, 501, 636, 829
DpnII GATC 5 cut(s) 173, 248, 499, 634, 827
DriI GACNNNNNGTC 1 cut(s) 553
EaeI YGGCCR 2 cut(s) 12, 921
Eam1104I CTCTTC 2 cut(s) 327, 479
Eam1105I GACNNNNNGTC 1 cut(s) 553
EarI CTCTTC 2 cut(s) 327, 479
EciI GGCGGA 2 cut(s) 45, 217
Ecl136II GAGCTC 1 cut(s) 652
Eco130I CCWWGG 1 cut(s) 205
Eco24I GRGCYC 3 cut(s) 113, 282, 654
Eco31I GGTCTC 2 cut(s) 374, 700
Eco47I GGWCC 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 652
EcoICRI GAGCTC 1 cut(s) 652
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoO109I RGGNCCY 2 cut(s) 279, 337
EcoRI GAATTC 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 205
EcoT38I GRGCYC 3 cut(s) 113, 282, 654
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 3 cut(s) 553, 562, 617
FaiI YATR 5 cut(s) 482, 551, 560, 615, 899
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 1 cut(s) 134
FatI CATG 3 cut(s) 549, 558, 613
FauI CCCGC 1 cut(s) 383
FbaI TGATCA 1 cut(s) 499
FblI GTMKAC 1 cut(s) 882
Fnu4HI GCNGC 6 cut(s) 37, 59, 79, 88, 179, 860
FokI GGATG 1 cut(s) 914
FriOI GRGCYC 3 cut(s) 113, 282, 654
Fsp4HI GCNGC 6 cut(s) 37, 59, 79, 88, 179, 860
FspBI CTAG 1 cut(s) 162
GlaI GCGC 5 cut(s) 62, 86, 91, 287, 417
GluI GCNGC 6 cut(s) 37, 59, 79, 88, 179, 860
GsaI CCCAGC 1 cut(s) 286
HaeIII GGCC 7 cut(s) 14, 210, 280, 301, 339, 862, 923
HapII CCGG 1 cut(s) 519
HhaI GCGC 5 cut(s) 63, 87, 92, 288, 418
Hin1II CATG 3 cut(s) 553, 562, 617
Hin6I GCGC 5 cut(s) 61, 85, 90, 286, 416
HinP1I GCGC 5 cut(s) 61, 85, 90, 286, 416
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HindIII AAGCTT 1 cut(s) 772
HinfI GANTC 7 cut(s) 23, 122, 224, 320, 439, 700, 879
HpaII CCGG 1 cut(s) 519
HphI GGTGA 3 cut(s) 43, 646, 835
Hpy166II GTNNAC 4 cut(s) 97, 785, 883, 945
Hpy188I TCNGA 2 cut(s) 28, 705
Hpy188III TCNNGA 5 cut(s) 246, 344, 632, 693, 831
Hpy8I GTNNAC 4 cut(s) 97, 785, 883, 945
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 2 cut(s) 301, 350
HpyCH4III ACNGT 7 cut(s) 275, 427, 571, 658, 718, 752, 892
HpyCH4IV ACGT 2 cut(s) 70, 102
HpyCH4V TGCA 4 cut(s) 106, 785, 888, 945
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 84, 87, 458
HpyF3I CTNAG 3 cut(s) 41, 532, 906
HpySE526I ACGT 2 cut(s) 70, 102
Hsp92II CATG 3 cut(s) 553, 562, 617
HspAI GCGC 5 cut(s) 61, 85, 90, 286, 416
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 5 cut(s) 173, 248, 499, 634, 827
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 2 cut(s) 255, 758
Lsp1109I GCAGC 2 cut(s) 48, 90
LweI GCATC 2 cut(s) 267, 892
MabI ACCWGGT 1 cut(s) 236
MaeI CTAG 1 cut(s) 162
MaeII ACGT 2 cut(s) 70, 102
MaeIII GTNAC 2 cut(s) 44, 383
MalI GATC 5 cut(s) 175, 250, 501, 636, 829
MboI GATC 5 cut(s) 173, 248, 499, 634, 827
MboII GAAGA 7 cut(s) 151, 341, 344, 496, 536, 922, 946
MhlI GDGCHC 6 cut(s) 113, 282, 463, 654, 787, 947
MlsI TGGCCA 2 cut(s) 14, 923
MluCI AATT 9 cut(s) 314, 503, 562, 575, 680, 711, 721, 738, 763
MluNI TGGCCA 2 cut(s) 14, 923
MlyI GAGTC 6 cut(s) 17, 116, 233, 314, 709, 888
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 9 cut(s) 22, 50, 124, 192, 211, 241, 291, 328, 814
Mox20I TGGCCA 2 cut(s) 14, 923
MscI TGGCCA 2 cut(s) 14, 923
MslI CAYNNNNRTG 1 cut(s) 219
Msp20I TGGCCA 2 cut(s) 14, 923
MspA1I CMGCKG 1 cut(s) 666
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 1 cut(s) 238
MteI GCGCNGCGC 1 cut(s) 88
MvaI CCWGG 1 cut(s) 238
MvnI CGCG 4 cut(s) 61, 87, 220, 253
MwoI GCNNNNNNNGC 4 cut(s) 64, 84, 87, 458
NdeII GATC 5 cut(s) 173, 248, 499, 634, 827
NlaIII CATG 3 cut(s) 553, 562, 617
NlaIV GGNNCC 3 cut(s) 211, 280, 281
NmuCI GTSAC 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 219
PciSI GCTCTTC 1 cut(s) 479
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 654
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 6 cut(s) 38, 60, 80, 89, 180, 861
PleI GAGTC 6 cut(s) 17, 116, 232, 314, 708, 887
PpsI GAGTC 6 cut(s) 17, 116, 232, 314, 708, 887
Ppu21I YACGTR 2 cut(s) 71, 103
Psp124BI GAGCTC 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 282
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 3 cut(s) 211, 280, 281
PspOMI GGGCCC 1 cut(s) 278
PspPI GGNCC 6 cut(s) 209, 278, 279, 310, 337, 861
RseI CAYNNNNRTG 1 cut(s) 219
SacI GAGCTC 1 cut(s) 654
SalI GTCGAC 1 cut(s) 881
SapI GCTCTTC 1 cut(s) 479
SatI GCNGC 6 cut(s) 37, 59, 79, 88, 179, 860
Sau3AI GATC 5 cut(s) 173, 248, 499, 634, 827
Sau96I GGNCC 6 cut(s) 209, 278, 279, 310, 337, 861
SchI GAGTC 6 cut(s) 17, 116, 233, 314, 709, 888
ScrFI CCNGG 1 cut(s) 238
SduI GDGCHC 6 cut(s) 113, 282, 463, 654, 787, 947
SetI ASST 9 cut(s) 33, 73, 105, 242, 538, 654, 776, 825, 838
SexAI ACCWGGT 1 cut(s) 236
SfaNI GCATC 2 cut(s) 267, 892
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 219
Sse9I AATT 9 cut(s) 314, 503, 562, 575, 680, 711, 721, 738, 763
SsiI CCGC 9 cut(s) 56, 59, 87, 179, 228, 253, 376, 666, 859
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 654
StyD4I CCNGG 1 cut(s) 236
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 7 cut(s) 275, 427, 571, 658, 718, 752, 892
TaiI ACGT 2 cut(s) 73, 105
TaqI TCGA 7 cut(s) 318, 345, 648, 692, 819, 830, 882
TasI AATT 9 cut(s) 314, 503, 562, 575, 680, 711, 721, 738, 763
TauI GCSGC 4 cut(s) 61, 90, 181, 862
TfiI GAWTC 1 cut(s) 439
TscAI CASTG 6 cut(s) 280, 598, 723, 810, 816, 895
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 36, 78
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 4 cut(s) 388, 497, 575, 929
TspRI CASTG 6 cut(s) 280, 598, 723, 810, 816, 895
VneI GTGCAC 2 cut(s) 783, 943
VpaK11BI GGWCC 1 cut(s) 310
XagI CCTNNNNNAGG 1 cut(s) 235
XapI RAATTY 6 cut(s) 562, 575, 680, 721, 738, 763
XmiI GTMKAC 1 cut(s) 882
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.