Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003196

Physical Location & Seq

Genomic Coordinates Reverse (-)

65021359 .. 65023208

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G041300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCACGCCAAGACCGACTCCGAGGTCACAAGCCTCGCCCCATCCTCCCCTACCCGATCCCCCCGCCGCCCAGTCTACTACGTCCAGAGTCCCTCCCGCGACTCCCACGACGGCGAGAAGACCACCACCTCGTTTCAGTCCACCCCCGTCCTCAGCCCCGCCGGCTCCCCTCCCCACTCCCACTCCTCCGTCGGCCGCCACTCCCGCGACTCCTCCTCCACCCGATTCTCCGGCTCCCTCAAGCCCGGATCCAAGAAGATCCAGCCCAACAACGACGGCTCCCGCGGCCACCACCACCGCAAGGGCGGCCACAAGGCATGGAAGGACTGCGCTGTCATCGAAGAAGAAGGCCTTCTCGACGACGAAGATCGCGAACGGGGCTTCCCCCGGCGATGTTATTTCCCGGCTTTCGTTCTCGGATTCTTCCTCCTCTTCACCATGTTCTCTCTCATTCTCTACGGCGCCAGTAAGCCCATGAAGCCCAAGATCACCATGAAGAGCGTTAGATTTGAACAATTCAAGATTCAAGCGGGTTCAGACAACACCGGAGTAGCCACCGAAATGATCTCCGTCAACTCCACCGTGAAATTCACATTCCGCAACACCGGCATTTTTCGGAGTCCATGTCTCGCCAAAGCCTCTAGATCTATCCTACTCCCAAATCACAATTGCCTCCGGAACTGTCAAGAAGTTTTATCAGTCAAGGAGGAGCCAGAGATCGGTGACGGTATCGGTATTCGGCGACAAAATTCCGTTATACGGGAGTGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

257

Amino Acids

28.6

Weight (kDa)

9.7

Isoelectric Point (pI)

65.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45688 AT1G45688
fragaria_vesca	FvH4_1g16160 FvH4_1g16160 FvH4_1g16160 FvH4_2g34240 FvH4_2g34240
malus_domestica	MD02G1173700.v1.1 MD08G1098400.v1.1 MD15G1080900.v1.1
prunus_persica	Prupe.1G433700_v2.0.a1 Prupe.7G132000_v2.0.a1 Prupe.7G132000_v2.0.a1
pyrus_communis	pycom08g08020 pycom15g07540
rosa_chinensis	RchiOBHm_Chr2g0105841 RchiOBHm_Chr6g0308181
rosa_laevigata	RLG00000010661 RLG00000017464
rosa_multiflora	Rmu_sc0004386.1_g000024 Rmu_sc0005706.1_g000011 Rmu_sc0010389.1_g000008
rosa_roxburghii	Rroxscaffold_2G00137840 Rroxscaffold_7G00160380 Rroxscaffold_7G00160470
rosa_rugosa	Rorug02G0130800 Rorug06G0364500
rosa_samantha	Rh2AG181900 Rh2BG191700 Rh2CG186300 Rh2DG188300 Rh6AG473700 Rh6BG484500 Rh6CG489700 Rh6DG475700
rosa_wichuraiana	Rw2G014260 Rw6G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 332
AccB1I	GGYRCC	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	4 cut(s)	99, 207, 285, 372
AccIII	TCCGGA	1 cut(s)	675
AclWI	GGATC	4 cut(s)	51, 243, 253, 256
AcoI	YGGCCR	3 cut(s)	193, 286, 307
AcsI	RAATTY	2 cut(s)	587, 748
AcyI	GRCGYC	1 cut(s)	462
AfiI	CCNNNNNNNGG	3 cut(s)	301, 719, 759
AgsI	TTSAA	3 cut(s)	512, 520, 527
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
AluBI	AGCT	1 cut(s)	771
AluI	AGCT	1 cut(s)	771
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	4 cut(s)	51, 243, 253, 256
Aor13HI	TCCGGA	1 cut(s)	675
AoxI	GGCC	4 cut(s)	193, 286, 307, 349
ApoI	RAATTY	2 cut(s)	587, 748
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	2 cut(s)	332, 464
AsuC2I	CCSGG	3 cut(s)	246, 388, 404
AsuHPI	GGTGA	3 cut(s)	427, 481, 734
BamHI	GGATCC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	125
BbvCI	CCTCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	3 cut(s)	127, 292, 475
BcnI	CCSGG	3 cut(s)	246, 388, 404
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	2 cut(s)	642, 772
BfoI	RGCGCY	1 cut(s)	465
BglI	GCCNNNNNGGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	644
BisI	GCNGC	4 cut(s)	67, 196, 286, 307
BlsI	GCNGC	4 cut(s)	68, 197, 287, 308
Bme1390I	CCNGG	3 cut(s)	246, 388, 404
BmiI	GGNNCC	6 cut(s)	166, 235, 250, 280, 463, 711
BmrFI	CCNGG	3 cut(s)	246, 388, 404
BmrI	ACTGGG	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	3 cut(s)	246, 388, 404
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	3 cut(s)	21, 283, 386
BsaWI	WCCGGW	2 cut(s)	545, 675
BsaXI	ACNNNNNCTCC	8 cut(s)	167, 197, 200, 230, 263, 293, 610, 640
Bsc4I	CCNNNNNNNGG	3 cut(s)	301, 719, 759
Bse118I	RCCGGY	2 cut(s)	161, 605
Bse1I	ACTGG	2 cut(s)	71, 465
BseAI	TCCGGA	1 cut(s)	675
BseDI	CCNNGG	3 cut(s)	21, 283, 386
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	3 cut(s)	301, 719, 759
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	2 cut(s)	71, 465
BseRI	GAGGAG	5 cut(s)	175, 202, 205, 419, 722
BseX3I	CGGCCG	1 cut(s)	193
Bsh1236I	CGCG	4 cut(s)	99, 207, 285, 372
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	4 cut(s)	195, 288, 309, 351
BshNI	GGYRCC	1 cut(s)	461
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	8 cut(s)	162, 231, 246, 388, 404, 546, 606, 676
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	301, 719, 759
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	4 cut(s)	195, 288, 309, 351
Bsp13I	TCCGGA	1 cut(s)	675
Bsp143I	GATC	8 cut(s)	56, 248, 258, 367, 486, 564, 644, 717
Bsp68I	TCGCGA	1 cut(s)	372
BspANI	GGCC	4 cut(s)	195, 288, 309, 351
BspCNI	CTCAG	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	675
BspFNI	CGCG	4 cut(s)	99, 207, 285, 372
BspLI	GGNNCC	6 cut(s)	166, 235, 250, 280, 463, 711
BspPI	GGATC	4 cut(s)	51, 243, 253, 256
BspQI	GCTCTTC	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	461
BsrFI	RCCGGY	2 cut(s)	161, 605
BsrI	ACTGG	2 cut(s)	71, 465
BssAI	RCCGGY	2 cut(s)	161, 605
BssECI	CCNNGG	3 cut(s)	21, 283, 386
BssMI	GATC	8 cut(s)	56, 248, 258, 367, 486, 564, 644, 717
BssNI	GRCGYC	1 cut(s)	462
Bst4CI	ACNGT	3 cut(s)	583, 683, 728
Bst6I	CTCTTC	2 cut(s)	437, 491
BstACI	GRCGYC	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	6, 163
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	4 cut(s)	99, 207, 285, 372
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	2 cut(s)	332, 464
BstKTI	GATC	8 cut(s)	59, 251, 261, 370, 489, 567, 647, 720
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	8 cut(s)	56, 248, 258, 367, 486, 564, 644, 717
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	7 cut(s)	162, 204, 285, 306, 378, 478, 606
BstSCI	CCNGG	3 cut(s)	244, 386, 402
BstUI	CGCG	4 cut(s)	99, 207, 285, 372
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	3 cut(s)	248, 258, 644
BstYI	RGATCY	3 cut(s)	248, 258, 644
BstZI	CGGCCG	1 cut(s)	193
BsuRI	GGCC	4 cut(s)	195, 288, 309, 351
BtgI	CCRYGG	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	41
BtuMI	TCGCGA	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	6, 163
CfoI	GCGC	2 cut(s)	332, 464
Cfr10I	RCCGGY	2 cut(s)	161, 605
Cfr42I	CCGCGG	1 cut(s)	286
CviAII	CATG	5 cut(s)	318, 439, 475, 493, 624
DdeI	CTNAG	1 cut(s)	152
DinI	GGCGCC	1 cut(s)	463
DpnI	GATC	8 cut(s)	58, 250, 260, 369, 488, 566, 646, 719
DpnII	GATC	8 cut(s)	56, 248, 258, 367, 486, 564, 644, 717
DrdI	GACNNNNNNGTC	2 cut(s)	23, 332
DseDI	GACNNNNNNGTC	2 cut(s)	23, 332
EaeI	YGGCCR	3 cut(s)	193, 286, 307
EagI	CGGCCG	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	437, 491
EarI	CTCTTC	2 cut(s)	437, 491
EclXI	CGGCCG	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	351
Eco52I	CGGCCG	1 cut(s)	193
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
FaeI	CATG	5 cut(s)	321, 442, 478, 496, 627
FaiI	YATR	6 cut(s)	319, 440, 476, 494, 625, 758
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	5 cut(s)	317, 438, 474, 492, 623
FauI	CCCGC	6 cut(s)	71, 104, 166, 212, 290, 523
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	4 cut(s)	67, 196, 286, 307
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	4 cut(s)	67, 196, 286, 307
FspBI	CTAG	2 cut(s)	642, 772
GlaI	GCGC	2 cut(s)	331, 463
GluI	GCNGC	4 cut(s)	67, 196, 286, 307
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	4 cut(s)	195, 288, 309, 351
HapII	CCGG	8 cut(s)	162, 231, 246, 388, 404, 546, 606, 676
HhaI	GCGC	2 cut(s)	332, 464
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	5 cut(s)	321, 442, 478, 496, 627
Hin6I	GCGC	2 cut(s)	330, 462
HinP1I	GCGC	2 cut(s)	330, 462
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	8 cut(s)	17, 88, 101, 209, 225, 420, 523, 619
HpaII	CCGG	8 cut(s)	162, 231, 246, 388, 404, 546, 606, 676
HphI	GGTGA	3 cut(s)	427, 481, 734
Hpy166II	GTNNAC	3 cut(s)	76, 141, 574
Hpy188I	TCNGA	4 cut(s)	22, 419, 538, 618
Hpy188III	TCNNGA	7 cut(s)	85, 356, 371, 520, 642, 676, 686
Hpy8I	GTNNAC	3 cut(s)	76, 141, 574
Hpy99I	CGWCG	5 cut(s)	113, 194, 278, 362, 365
HpyAV	CCTTC	3 cut(s)	316, 341, 362
HpyCH4III	ACNGT	3 cut(s)	583, 683, 728
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	7 cut(s)	162, 204, 285, 306, 378, 478, 606
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	5 cut(s)	321, 442, 478, 496, 627
HspAI	GCGC	2 cut(s)	330, 462
KasI	GGCGCC	1 cut(s)	461
Kpn2I	TCCGGA	1 cut(s)	675
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	8 cut(s)	56, 248, 258, 367, 486, 564, 644, 717
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	5 cut(s)	170, 239, 284, 709, 768
MaeI	CTAG	2 cut(s)	642, 772
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	25, 722
MalI	GATC	8 cut(s)	58, 250, 260, 369, 488, 566, 646, 719
MboI	GATC	8 cut(s)	56, 248, 258, 367, 486, 564, 644, 717
MboII	GAAGA	8 cut(s)	130, 268, 353, 356, 377, 415, 424, 508
MfeI	CAATTG	1 cut(s)	667
MflI	RGATCY	3 cut(s)	248, 258, 644
MluCI	AATT	4 cut(s)	515, 587, 667, 748
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	5 cut(s)	11, 95, 97, 203, 628
MroI	TCCGGA	1 cut(s)	675
MroNI	GCCGGC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	351
MslI	CAYNNNNRTG	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	8 cut(s)	162, 231, 246, 388, 404, 546, 606, 676
MspR9I	CCNGG	3 cut(s)	246, 388, 404
MunI	CAATTG	1 cut(s)	667
MvnI	CGCG	4 cut(s)	99, 207, 285, 372
MwoI	GCNNNNNNNGC	7 cut(s)	162, 204, 285, 306, 378, 478, 606
NaeI	GCCGGC	1 cut(s)	163
NarI	GGCGCC	1 cut(s)	462
NciI	CCSGG	3 cut(s)	246, 388, 404
NdeII	GATC	8 cut(s)	56, 248, 258, 367, 486, 564, 644, 717
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	5 cut(s)	321, 442, 478, 496, 627
NlaIV	GGNNCC	6 cut(s)	166, 235, 250, 280, 463, 711
NmuCI	GTSAC	2 cut(s)	25, 722
NruI	TCGCGA	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 369
PdiI	GCCGGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	225, 420, 523
PkrI	GCNGC	4 cut(s)	68, 197, 287, 308
PleI	GAGTC	5 cut(s)	11, 95, 96, 203, 627
PluTI	GGCGCC	1 cut(s)	465
PpsI	GAGTC	5 cut(s)	11, 95, 96, 203, 627
PspN4I	GGNNCC	6 cut(s)	166, 235, 250, 280, 463, 711
PsuI	RGATCY	3 cut(s)	248, 258, 644
RruI	TCGCGA	1 cut(s)	372
RseI	CAYNNNNRTG	1 cut(s)	560
SacII	CCGCGG	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	491
SatI	GCNGC	4 cut(s)	67, 196, 286, 307
Sau3AI	GATC	8 cut(s)	56, 248, 258, 367, 486, 564, 644, 717
SchI	GAGTC	5 cut(s)	11, 95, 97, 203, 628
ScrFI	CCNGG	3 cut(s)	246, 388, 404
SetI	ASST	4 cut(s)	27, 84, 131, 773
SfoI	GGCGCC	1 cut(s)	463
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	4 cut(s)	515, 587, 667, 748
SseBI	AGGCCT	1 cut(s)	351
SspDI	GGCGCC	1 cut(s)	461
SspMI	CTAG	2 cut(s)	642, 772
StuI	AGGCCT	1 cut(s)	351
StyD4I	CCNGG	3 cut(s)	244, 386, 402
TaaI	ACNGT	3 cut(s)	583, 683, 728
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	339, 357
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	4 cut(s)	515, 587, 667, 748
TauI	GCSGC	4 cut(s)	69, 198, 288, 309
TfiI	GAWTC	3 cut(s)	225, 420, 523
TseFI	GTSAC	2 cut(s)	25, 722
Tsp45I	GTSAC	2 cut(s)	25, 722
TspDTI	ATGAA	2 cut(s)	491, 509
TspGWI	ACGGA	3 cut(s)	178, 559, 742
XapI	RAATTY	2 cut(s)	587, 748
XbaI	TCTAGA	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	2 cut(s)	642, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.