Rh6BG484500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003196
Physical Location & Seq
Reverse (-)
68948319 .. 68950084
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG484500.1

Sequence Viewer

Length: 972 bp
ATGCACGCCAAGACCGACTCCGAGGTCACAAGCCTCGCCCCATCCTCCCCTACCCGATCCCCCCGCCGCCCAGTCTACTACGTCCAGAGCCCCTCCCGCGACTCCCACGACGGCGAAAAGACCACCACCTCTTTTCAGTCCACCCCCGTCCTCAGCCCCGCCGGCTCCCCTCCCCACTCCCACTCCTCCGTCGGCCGCCACTCCCGCGACTCCTCCTCCACCCGATTCTCCGGCTCCCTCAAGCCCGGATCCAAGAAGATCCAGCCCAACAACGACGGCTCCCGCGGCCACCACCACCACCACCGCAAGGGCGGCCACAAGGCATGGAAGGACTGCGCTGTCATCGAGGAAGAAGGCCTTCTCGACGACGAAGATCGCGAACGAGGCTTCCCCAGGCGATGTTATTTCCCGGCTTTCGTTCTCGGATTCTTCCTCCTCTTCACCATGTTCTCTCTCATTCTCTACGGCGCCAGTAAGCCCATGAAGCCCAAGATCACCATGAAGAGCGTTAGATTTGAACAATTCAAGATCCAAGCGGGTTCTGACAACACCGGAGTAGCCACCGAAATGATCTCCGTCAACTCCACCGTGAAATTCACATTCCGCAACACCGGCACATTTTTCGGAGTCCATGTCTCGCCAAAGCCTCTAGATCTATCCTACTCCCAAATCACAATTGCCTCCGGAACTGTCAAAAAGTTTTATCAATCACGGAGGAGCCAGAGATCGGTGACGGTATCAGTATTCGGCGACAAAATTCCGTTATACGGGAGTGGAGCTAGTATCAGTAGCTCCACAGGGACGACACTGCTGCCGGTGCCGCTGAAATTGGACTTCTTGATCAAATCTAGAGCCTACGTTTTGGGCAAACTAGTGAAGCCCAAATTCAACAGGCGGGTCGAGTGCATTGTGACTTTCGATCCCAAAAAGCTCAACGTTGCAATCGCGCTCAAGAATTGCACCTATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

323

Amino Acids

35.75

Weight (kDa)

10.03

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 23, 338
AccB1I GGYRCC 2 cut(s) 467, 817
AccI GTMKAC 1 cut(s) 75
AccII CGCG 5 cut(s) 99, 207, 285, 378, 947
AccIII TCCGGA 1 cut(s) 683
AclI AACGTT 1 cut(s) 936
AclWI GGATC 6 cut(s) 51, 243, 253, 256, 523, 914
AcoI YGGCCR 3 cut(s) 193, 286, 313
AcsI RAATTY 3 cut(s) 593, 756, 884
AcyI GRCGYC 1 cut(s) 468
AfiI CCNNNNNNNGG 3 cut(s) 307, 727, 767
AgsI TTSAA 3 cut(s) 518, 526, 889
AhlI ACTAGT 1 cut(s) 871
AjnI CCWGG 1 cut(s) 392
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 3 cut(s) 779, 792, 931
AluI AGCT 3 cut(s) 779, 792, 931
Alw26I GTCTC 1 cut(s) 640
AlwI GGATC 6 cut(s) 51, 243, 253, 256, 523, 914
Aor13HI TCCGGA 1 cut(s) 683
AoxI GGCC 4 cut(s) 193, 286, 313, 355
ApeKI GCWGC 1 cut(s) 811
ApoI RAATTY 3 cut(s) 593, 756, 884
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 3 cut(s) 338, 470, 949
AsuC2I CCSGG 2 cut(s) 246, 410
AsuHPI GGTGA 3 cut(s) 433, 487, 742
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 2 cut(s) 467, 817
BanII GRGCYC 1 cut(s) 92
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 798
BccI CCATC 1 cut(s) 49
BceAI ACGGC 3 cut(s) 127, 292, 481
BcgI CGANNNNNNTGC 4 cut(s) 604, 638, 793, 827
BciT130I CCWGG 1 cut(s) 394
BclI TGATCA 1 cut(s) 840
BcnI CCSGG 2 cut(s) 246, 410
BcoDI GTCTC 1 cut(s) 640
BcuI ACTAGT 1 cut(s) 871
BfaI CTAG 4 cut(s) 650, 780, 849, 872
BfoI RGCGCY 1 cut(s) 471
BglI GCCNNNNNGGC 1 cut(s) 162
BglII AGATCT 1 cut(s) 652
BisI GCNGC 6 cut(s) 67, 196, 286, 313, 812, 821
BlsI GCNGC 6 cut(s) 68, 197, 287, 314, 813, 822
Bme1390I CCNGG 3 cut(s) 246, 394, 410
BmiI GGNNCC 7 cut(s) 166, 235, 250, 280, 469, 719, 819
BmrFI CCNGG 3 cut(s) 246, 394, 410
BmrI ACTGGG 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 2 cut(s) 224, 935
BpuMI CCSGG 2 cut(s) 246, 410
BsaHI GRCGYC 1 cut(s) 468
BsaJI CCNNGG 3 cut(s) 21, 283, 392
BsaWI WCCGGW 2 cut(s) 551, 683
BsaXI ACNNNNNCTCC 8 cut(s) 167, 197, 200, 230, 263, 293, 618, 648
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 727, 767
Bse118I RCCGGY 3 cut(s) 161, 611, 814
Bse1I ACTGG 2 cut(s) 71, 471
BseAI TCCGGA 1 cut(s) 683
BseBI CCWGG 1 cut(s) 394
BseDI CCNNGG 3 cut(s) 21, 283, 392
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 3 cut(s) 307, 727, 767
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 2 cut(s) 71, 471
BseRI GAGGAG 5 cut(s) 175, 202, 205, 425, 730
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 798
Bsh1236I CGCG 5 cut(s) 99, 207, 285, 378, 947
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 4 cut(s) 195, 288, 315, 357
BshNI GGYRCC 2 cut(s) 467, 817
BsiEI CGRYCG 1 cut(s) 196
BsiSI CCGG 8 cut(s) 162, 231, 246, 410, 552, 612, 684, 815
BslFI GGGAC 1 cut(s) 814
BslI CCNNNNNNNGG 3 cut(s) 307, 727, 767
BsmAI GTCTC 1 cut(s) 640
BsmFI GGGAC 1 cut(s) 814
BsnI GGCC 4 cut(s) 195, 288, 315, 357
Bsp1286I GDGCHC 1 cut(s) 92
Bsp13I TCCGGA 1 cut(s) 683
Bsp68I TCGCGA 1 cut(s) 378
BspANI GGCC 4 cut(s) 195, 288, 315, 357
BspCNI CTCAG 1 cut(s) 165
BspEI TCCGGA 1 cut(s) 683
BspFNI CGCG 5 cut(s) 99, 207, 285, 378, 947
BspLI GGNNCC 7 cut(s) 166, 235, 250, 280, 469, 719, 819
BspPI GGATC 6 cut(s) 51, 243, 253, 256, 523, 914
BspQI GCTCTTC 1 cut(s) 497
BspT107I GGYRCC 2 cut(s) 467, 817
BsrFI RCCGGY 3 cut(s) 161, 611, 814
BsrI ACTGG 2 cut(s) 71, 471
BssAI RCCGGY 3 cut(s) 161, 611, 814
BssECI CCNNGG 3 cut(s) 21, 283, 392
BssNI GRCGYC 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 394
Bst4CI ACNGT 3 cut(s) 589, 691, 736
Bst6I CTCTTC 2 cut(s) 443, 497
BstACI GRCGYC 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 6, 163
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 5 cut(s) 99, 207, 285, 378, 947
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 3 cut(s) 338, 470, 949
BstMAI GTCTC 1 cut(s) 640
BstMCI CGRYCG 1 cut(s) 196
BstNI CCWGG 1 cut(s) 394
BstSCI CCNGG 3 cut(s) 244, 392, 408
BstUI CGCG 5 cut(s) 99, 207, 285, 378, 947
BstV1I GCAGC 1 cut(s) 798
BstX2I RGATCY 4 cut(s) 248, 258, 528, 652
BstYI RGATCY 4 cut(s) 248, 258, 528, 652
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 4 cut(s) 195, 288, 315, 357
BtgI CCRYGG 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 412
BtsCI GGATG 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 806
BtsIMutI CAGTG 1 cut(s) 806
BtuMI TCGCGA 1 cut(s) 378
Cac8I GCNNGC 2 cut(s) 6, 163
CfoI GCGC 3 cut(s) 338, 470, 949
Cfr10I RCCGGY 3 cut(s) 161, 611, 814
Cfr42I CCGCGG 1 cut(s) 286
CviAII CATG 5 cut(s) 324, 445, 481, 499, 632
DdeI CTNAG 1 cut(s) 152
DinI GGCGCC 1 cut(s) 469
DrdI GACNNNNNNGTC 2 cut(s) 23, 338
DseDI GACNNNNNNGTC 2 cut(s) 23, 338
EaeI YGGCCR 3 cut(s) 193, 286, 313
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 443, 497
EarI CTCTTC 2 cut(s) 443, 497
EclXI CGGCCG 1 cut(s) 193
Eco147I AGGCCT 1 cut(s) 357
Eco24I GRGCYC 1 cut(s) 92
Eco52I CGGCCG 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 392
EcoT38I GRGCYC 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 469
EheI GGCGCC 1 cut(s) 469
FaeI CATG 5 cut(s) 327, 448, 484, 502, 635
FaiI YATR 7 cut(s) 325, 446, 482, 500, 633, 766, 966
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FaqI GGGAC 1 cut(s) 814
FatI CATG 5 cut(s) 323, 444, 480, 498, 631
FauI CCCGC 7 cut(s) 71, 104, 166, 212, 290, 529, 888
FbaI TGATCA 1 cut(s) 840
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 6 cut(s) 67, 196, 286, 313, 812, 821
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 6 cut(s) 67, 196, 286, 313, 812, 821
FspBI CTAG 4 cut(s) 650, 780, 849, 872
GlaI GCGC 3 cut(s) 337, 469, 948
GluI GCNGC 6 cut(s) 67, 196, 286, 313, 812, 821
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 4 cut(s) 195, 288, 315, 357
HapII CCGG 8 cut(s) 162, 231, 246, 410, 552, 612, 684, 815
HhaI GCGC 3 cut(s) 338, 470, 949
Hin1I GRCGYC 1 cut(s) 468
Hin1II CATG 5 cut(s) 327, 448, 484, 502, 635
Hin6I GCGC 3 cut(s) 336, 468, 947
HinP1I GCGC 3 cut(s) 336, 468, 947
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 6 cut(s) 17, 101, 209, 225, 426, 627
HpaII CCGG 8 cut(s) 162, 231, 246, 410, 552, 612, 684, 815
HphI GGTGA 3 cut(s) 433, 487, 742
Hpy166II GTNNAC 3 cut(s) 76, 141, 580
Hpy188I TCNGA 4 cut(s) 22, 425, 544, 626
Hpy188III TCNNGA 9 cut(s) 85, 362, 377, 526, 650, 684, 838, 849, 952
Hpy8I GTNNAC 3 cut(s) 76, 141, 580
Hpy99I CGWCG 5 cut(s) 113, 194, 278, 368, 371
HpyAV CCTTC 3 cut(s) 322, 347, 368
HpyCH4III ACNGT 3 cut(s) 589, 691, 736
HpyCH4IV ACGT 3 cut(s) 81, 858, 936
HpyCH4V TGCA 4 cut(s) 4, 906, 941, 960
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 3 cut(s) 81, 858, 936
Hsp92I GRCGYC 1 cut(s) 468
Hsp92II CATG 5 cut(s) 327, 448, 484, 502, 635
HspAI GCGC 3 cut(s) 336, 468, 947
KasI GGCGCC 1 cut(s) 467
Kpn2I TCCGGA 1 cut(s) 683
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 840
KspI CCGCGG 1 cut(s) 286
LguI GCTCTTC 1 cut(s) 497
LmnI GCTCC 6 cut(s) 170, 239, 284, 717, 776, 797
Lsp1109I GCAGC 1 cut(s) 798
MaeI CTAG 4 cut(s) 650, 780, 849, 872
MaeII ACGT 3 cut(s) 81, 858, 936
MaeIII GTNAC 3 cut(s) 25, 730, 910
MboII GAAGA 6 cut(s) 268, 362, 383, 421, 430, 514
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 4 cut(s) 248, 258, 528, 652
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 8 cut(s) 521, 593, 675, 756, 827, 884, 955, 967
Mly113I GGCGCC 1 cut(s) 468
MlyI GAGTC 4 cut(s) 11, 95, 203, 636
MroI TCCGGA 1 cut(s) 683
MroNI GCCGGC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 1 cut(s) 970
MslI CAYNNNNRTG 1 cut(s) 566
MspA1I CMGCKG 2 cut(s) 285, 823
MspI CCGG 8 cut(s) 162, 231, 246, 410, 552, 612, 684, 815
MspR9I CCNGG 3 cut(s) 246, 394, 410
MunI CAATTG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 394
MvnI CGCG 5 cut(s) 99, 207, 285, 378, 947
NaeI GCCGGC 1 cut(s) 163
NarI GGCGCC 1 cut(s) 468
NciI CCSGG 2 cut(s) 246, 410
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 5 cut(s) 327, 448, 484, 502, 635
NlaIV GGNNCC 7 cut(s) 166, 235, 250, 280, 469, 719, 819
NmuCI GTSAC 3 cut(s) 25, 730, 910
NruI TCGCGA 1 cut(s) 378
PceI AGGCCT 1 cut(s) 357
PciSI GCTCTTC 1 cut(s) 497
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 375
PdiI GCCGGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 2 cut(s) 225, 426
PkrI GCNGC 6 cut(s) 68, 197, 287, 314, 813, 822
PleI GAGTC 4 cut(s) 11, 95, 203, 635
PluTI GGCGCC 1 cut(s) 471
PpsI GAGTC 4 cut(s) 11, 95, 203, 635
Psp1406I AACGTT 1 cut(s) 936
Psp6I CCWGG 1 cut(s) 392
PspGI CCWGG 1 cut(s) 392
PspN4I GGNNCC 7 cut(s) 166, 235, 250, 280, 469, 719, 819
PsuI RGATCY 4 cut(s) 248, 258, 528, 652
RruI TCGCGA 1 cut(s) 378
RseI CAYNNNNRTG 1 cut(s) 566
SacII CCGCGG 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 497
SaqAI TTAA 1 cut(s) 970
SatI GCNGC 6 cut(s) 67, 196, 286, 313, 812, 821
SchI GAGTC 4 cut(s) 11, 95, 203, 636
ScrFI CCNGG 3 cut(s) 246, 394, 410
SduI GDGCHC 1 cut(s) 92
SetI ASST 9 cut(s) 27, 84, 131, 781, 794, 861, 933, 939, 965
SfoI GGCGCC 1 cut(s) 469
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 2 cut(s) 239, 950
SmoI CTYRAG 2 cut(s) 239, 950
SpeI ACTAGT 1 cut(s) 871
Sse9I AATT 8 cut(s) 521, 593, 675, 756, 827, 884, 955, 967
SseBI AGGCCT 1 cut(s) 357
SspDI GGCGCC 1 cut(s) 467
SspMI CTAG 4 cut(s) 650, 780, 849, 872
StuI AGGCCT 1 cut(s) 357
StyD4I CCNGG 3 cut(s) 244, 392, 408
TaaI ACNGT 3 cut(s) 589, 691, 736
TaiI ACGT 3 cut(s) 84, 861, 939
TaqI TCGA 4 cut(s) 345, 363, 900, 918
TaqII GACCGA 1 cut(s) 29
TasI AATT 8 cut(s) 521, 593, 675, 756, 827, 884, 955, 967
TauI GCSGC 5 cut(s) 69, 198, 288, 315, 823
TfiI GAWTC 2 cut(s) 225, 426
Tru1I TTAA 1 cut(s) 970
Tru9I TTAA 1 cut(s) 970
TscAI CASTG 1 cut(s) 813
TseFI GTSAC 3 cut(s) 25, 730, 910
TseI GCWGC 1 cut(s) 811
Tsp45I GTSAC 3 cut(s) 25, 730, 910
TspDTI ATGAA 2 cut(s) 497, 515
TspGWI ACGGA 4 cut(s) 178, 565, 727, 750
TspRI CASTG 1 cut(s) 813
XapI RAATTY 3 cut(s) 593, 756, 884
XbaI TCTAGA 2 cut(s) 649, 848
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 4 cut(s) 650, 780, 849, 872
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.