Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003196

Physical Location & Seq

Genomic Coordinates Forward (+)

3353023 .. 3359084

Gene Structure 6062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCCATAACCGCGCTCGGAGACGATCTCCAAAATCGGATCCGACAAAATCTCCCGGCCTCCGCGACGACCCAAACCATTCTCGGCGACGTTGCAAGCTCCGGTGAGACCGCCGCAGAATTTGAAAATGACGATGGTGCATTTTCCAGTTTTGTTTCCAAATTAGCTGCTGCTGCTTCAGCTAGCTTGGGAACTTTTTCAGGAGCGATCGAGGCCAGTGATTCAATAATTCAAGTTGGATCCAAAGTCCAAACAAACAATGGATCTGTGTACTTATCAGACCTCGCCCCATCCTCCCCTACCCGATCCCCCCGCCGCCCAGTCTACTACGTCCAGAGCCCCTCCCGCGACTCCCACGACGGCGAGAAGACCACCACCTCCTTTCAGTCCACCCCCGTCCTCAGCCCCGCCGGCTCCCCTCCCCACTCCCACTCCTCCGTCGGCCGCCACTCCCGCGACTCCTCCTCCACTCGATTCTCCGGCTCCCTCAAGCCCGGATCCAAGAAGATCCAGCCCAACAACGACGGCTCCCGCGGCCACCACCACCGCAAGGGCGGCCACAAGGCATGGAAGGACTGCGCTGTCATCGAAGAAGAAGGCCTTCTCGACGACGAAGATCGCGAACGAGGCTTCCCCGGCGATGTTATTTCCCGGCTTTCGTTCTCGGATTCTTCCTCCTCTTCACCATATTCTCTCTCATTCTCTACGGCGCCAAGCGTTAGATTTGAACAATTCAAGATCCAAGCGGGTTCAGACAACACCGGAGTAGCCACCGAAATGATCTCCGTCAACTCCACTGTGAAATTCACATTCCGCAACACCGGCACATTTTTCGGAGTCCATGTCTCGCCAAAGCCTCTGGATCTATCCTACTCCCAAATTACAATTGCCTCCGGAACTGTCAAGAAGTTTTATCAATCAAGGAGGAGCCAGAGATCGGTGACGGTATCAGTATTCGGCGACAAAATTCCGTTATACGGGAGTGGAGCTAGTATCAGTAGCTCCACAGGGACGACATTGCTGCCGGTGCCGCTGAAATTGGACTTCTTGATCAAATCCAGAGCCTACGTTTTGGGCAAACTAGTGAAGCCCAAATTCAACAGGCGGGTCGAGTGCATTGTCACTTTCGATCCCAAAAAGCTCAACGTTGCAATCGCGCTCAAGAATTGCACCTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

393

Amino Acids

42.12

Weight (kDa)

9.43

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45688 AT1G45688
fragaria_vesca	FvH4_1g16160 FvH4_1g16160 FvH4_1g16160 FvH4_2g34240 FvH4_2g34240
malus_domestica	MD02G1173700.v1.1 MD08G1098400.v1.1 MD15G1080900.v1.1
prunus_persica	Prupe.1G433700_v2.0.a1 Prupe.7G132000_v2.0.a1 Prupe.7G132000_v2.0.a1
pyrus_communis	pycom08g08020 pycom15g07540
rosa_chinensis	RchiOBHm_Chr2g0105841 RchiOBHm_Chr6g0308181
rosa_laevigata	RLG00000010661 RLG00000017464
rosa_multiflora	Rmu_sc0004386.1_g000024 Rmu_sc0005706.1_g000011 Rmu_sc0010389.1_g000008
rosa_roxburghii	Rroxscaffold_2G00137840 Rroxscaffold_7G00160380 Rroxscaffold_7G00160470
rosa_rugosa	Rorug02G0130800 Rorug06G0364500
rosa_samantha	Rh2AG181900 Rh2BG191700 Rh2CG186300 Rh2DG188300 Rh6AG473700 Rh6BG484500 Rh6CG489700 Rh6DG475700
rosa_wichuraiana	Rw2G014260 Rw6G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	581
AccB1I	GGYRCC	2 cut(s)	709, 1027
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	7 cut(s)	14, 65, 348, 456, 534, 621, 1157
AccIII	TCCGGA	1 cut(s)	893
AclI	AACGTT	1 cut(s)	1146
AcoI	YGGCCR	3 cut(s)	442, 535, 556
AcsI	RAATTY	4 cut(s)	119, 803, 966, 1094
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	550, 937, 977
AgsI	TTSAA	6 cut(s)	125, 225, 233, 728, 736, 1099
AhlI	ACTAGT	1 cut(s)	1081
AloI	GAACNNNNNNTCC	2 cut(s)	615, 647
AluBI	AGCT	7 cut(s)	99, 167, 182, 186, 989, 1002, 1141
AluI	AGCT	7 cut(s)	99, 167, 182, 186, 989, 1002, 1141
Alw26I	GTCTC	3 cut(s)	15, 101, 850
Aor13HI	TCCGGA	1 cut(s)	893
AoxI	GGCC	6 cut(s)	57, 213, 442, 535, 556, 598
ApeKI	GCWGC	4 cut(s)	167, 170, 173, 1021
ApoI	RAATTY	4 cut(s)	119, 803, 966, 1094
Asp700I	GAANNNNTTC	2 cut(s)	196, 600
AspLEI	GCGC	4 cut(s)	16, 581, 712, 1159
AsuC2I	CCSGG	4 cut(s)	56, 495, 636, 652
AsuHPI	GGTGA	3 cut(s)	116, 675, 952
AsuNHI	GCTAGC	1 cut(s)	182
BamHI	GGATCC	3 cut(s)	39, 239, 497
BanI	GGYRCC	2 cut(s)	709, 1027
BanII	GRGCYC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	374
BbvCI	CCTCAGC	1 cut(s)	401
BbvI	GCAGC	4 cut(s)	154, 157, 160, 1008
BccI	CCATC	2 cut(s)	128, 298
BceAI	ACGGC	3 cut(s)	376, 541, 723
BcgI	CGANNNNNNTGC	4 cut(s)	814, 848, 1003, 1037
BclI	TGATCA	1 cut(s)	1050
BcnI	CCSGG	4 cut(s)	56, 495, 636, 652
BcoDI	GTCTC	3 cut(s)	15, 101, 850
BcuI	ACTAGT	1 cut(s)	1081
BfaI	CTAG	3 cut(s)	183, 990, 1082
BfoI	RGCGCY	1 cut(s)	713
BglI	GCCNNNNNGGC	1 cut(s)	411
Bme1390I	CCNGG	4 cut(s)	56, 495, 636, 652
BmiI	GGNNCC	9 cut(s)	41, 241, 415, 484, 499, 529, 711, 929, 1029
BmrFI	CCNGG	4 cut(s)	56, 495, 636, 652
BmrI	ACTGGG	1 cut(s)	314
BmtI	GCTAGC	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
Bpu10I	CCTNAGC	1 cut(s)	401
BpuEI	CTTGAG	2 cut(s)	473, 1145
BpuMI	CCSGG	4 cut(s)	56, 495, 636, 652
BsaHI	GRCGYC	1 cut(s)	710
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	532, 634
BsaWI	WCCGGW	3 cut(s)	101, 761, 893
Bsc4I	CCNNNNNNNGG	3 cut(s)	550, 937, 977
Bse118I	RCCGGY	3 cut(s)	410, 821, 1024
Bse1I	ACTGG	3 cut(s)	147, 216, 320
Bse3DI	GCAATG	1 cut(s)	1016
BseAI	TCCGGA	1 cut(s)	893
BseDI	CCNNGG	2 cut(s)	532, 634
BseGI	GGATG	1 cut(s)	290
BseLI	CCNNNNNNNGG	3 cut(s)	550, 937, 977
BseMI	GCAATG	1 cut(s)	1016
BseMII	CTCAG	1 cut(s)	415
BseNI	ACTGG	3 cut(s)	147, 216, 320
BseRI	GAGGAG	5 cut(s)	424, 451, 454, 667, 940
BseX3I	CGGCCG	1 cut(s)	442
BseXI	GCAGC	4 cut(s)	154, 157, 160, 1008
Bsh1236I	CGCG	7 cut(s)	14, 65, 348, 456, 534, 621, 1157
Bsh1285I	CGRYCG	2 cut(s)	210, 445
BshFI	GGCC	6 cut(s)	59, 215, 444, 537, 558, 600
BshNI	GGYRCC	2 cut(s)	709, 1027
BsiEI	CGRYCG	2 cut(s)	210, 445
BslFI	GGGAC	1 cut(s)	1024
BslI	CCNNNNNNNGG	3 cut(s)	550, 937, 977
BsmAI	GTCTC	3 cut(s)	15, 101, 850
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	1 cut(s)	1024
BsnI	GGCC	6 cut(s)	59, 215, 444, 537, 558, 600
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp13I	TCCGGA	1 cut(s)	893
Bsp68I	TCGCGA	1 cut(s)	621
BspANI	GGCC	6 cut(s)	59, 215, 444, 537, 558, 600
BspCNI	CTCAG	1 cut(s)	414
BspEI	TCCGGA	1 cut(s)	893
BspFNI	CGCG	7 cut(s)	14, 65, 348, 456, 534, 621, 1157
BspLI	GGNNCC	9 cut(s)	41, 241, 415, 484, 499, 529, 711, 929, 1029
BspOI	GCTAGC	1 cut(s)	186
BspT107I	GGYRCC	2 cut(s)	709, 1027
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	1016
BsrFI	RCCGGY	3 cut(s)	410, 821, 1024
BsrI	ACTGG	3 cut(s)	147, 216, 320
BssAI	RCCGGY	3 cut(s)	410, 821, 1024
BssECI	CCNNGG	2 cut(s)	532, 634
BssNI	GRCGYC	1 cut(s)	710
Bst4CI	ACNGT	3 cut(s)	799, 901, 946
Bst6I	CTCTTC	1 cut(s)	685
BstACI	GRCGYC	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	97, 184, 412
BstDEI	CTNAG	1 cut(s)	401
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	1 cut(s)	290
BstFNI	CGCG	7 cut(s)	14, 65, 348, 456, 534, 621, 1157
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	4 cut(s)	16, 581, 712, 1159
BstMAI	GTCTC	3 cut(s)	15, 101, 850
BstMCI	CGRYCG	2 cut(s)	210, 445
BstSCI	CCNGG	4 cut(s)	54, 493, 634, 650
BstUI	CGCG	7 cut(s)	14, 65, 348, 456, 534, 621, 1157
BstV1I	GCAGC	4 cut(s)	154, 157, 160, 1008
BstV2I	GAAGAC	1 cut(s)	374
BstX2I	RGATCY	7 cut(s)	39, 239, 263, 497, 507, 738, 862
BstYI	RGATCY	7 cut(s)	39, 239, 263, 497, 507, 738, 862
BstZI	CGGCCG	1 cut(s)	442
BsuRI	GGCC	6 cut(s)	59, 215, 444, 537, 558, 600
BtgI	CCRYGG	1 cut(s)	532
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	1 cut(s)	290
BtsIMutI	CAGTG	2 cut(s)	223, 795
BtuMI	TCGCGA	1 cut(s)	621
Cac8I	GCNNGC	3 cut(s)	97, 184, 412
CfoI	GCGC	4 cut(s)	16, 581, 712, 1159
Cfr10I	RCCGGY	3 cut(s)	410, 821, 1024
Cfr42I	CCGCGG	1 cut(s)	535
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	2 cut(s)	567, 842
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	1 cut(s)	401
DinI	GGCGCC	1 cut(s)	711
DrdI	GACNNNNNNGTC	1 cut(s)	581
DseDI	GACNNNNNNGTC	1 cut(s)	581
EaeI	YGGCCR	3 cut(s)	442, 535, 556
EagI	CGGCCG	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	685
EarI	CTCTTC	1 cut(s)	685
EclXI	CGGCCG	1 cut(s)	442
Eco147I	AGGCCT	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	341
Eco31I	GGTCTC	1 cut(s)	101
Eco52I	CGGCCG	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	341
EgeI	GGCGCC	1 cut(s)	711
EheI	GGCGCC	1 cut(s)	711
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	2 cut(s)	570, 845
FaiI	YATR	6 cut(s)	8, 568, 688, 843, 976, 1176
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	1024
FatI	CATG	2 cut(s)	566, 841
FauI	CCCGC	7 cut(s)	320, 353, 415, 461, 539, 739, 1098
FbaI	TGATCA	1 cut(s)	1050
FblI	GTMKAC	1 cut(s)	324
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	1 cut(s)	341
FspBI	CTAG	3 cut(s)	183, 990, 1082
GlaI	GCGC	4 cut(s)	15, 580, 711, 1158
HaeII	RGCGCY	1 cut(s)	713
HaeIII	GGCC	6 cut(s)	59, 215, 444, 537, 558, 600
HhaI	GCGC	4 cut(s)	16, 581, 712, 1159
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	2 cut(s)	570, 845
Hin6I	GCGC	4 cut(s)	14, 579, 710, 1157
HinP1I	GCGC	4 cut(s)	14, 579, 710, 1157
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HinfI	GANTC	6 cut(s)	221, 350, 458, 474, 668, 837
HphI	GGTGA	3 cut(s)	116, 675, 952
Hpy166II	GTNNAC	4 cut(s)	271, 325, 390, 790
Hpy188I	TCNGA	7 cut(s)	20, 39, 44, 280, 667, 754, 836
Hpy8I	GTNNAC	4 cut(s)	271, 325, 390, 790
Hpy99I	CGWCG	7 cut(s)	70, 92, 362, 443, 527, 611, 614
HpyAV	CCTTC	3 cut(s)	565, 590, 611
HpyCH4III	ACNGT	3 cut(s)	799, 901, 946
HpyCH4IV	ACGT	4 cut(s)	90, 330, 1068, 1146
HpyCH4V	TGCA	5 cut(s)	95, 140, 1116, 1151, 1170
HpyF3I	CTNAG	1 cut(s)	401
HpySE526I	ACGT	4 cut(s)	90, 330, 1068, 1146
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	2 cut(s)	570, 845
HspAI	GCGC	4 cut(s)	14, 579, 710, 1157
KasI	GGCGCC	1 cut(s)	709
Kpn2I	TCCGGA	1 cut(s)	893
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	1050
KspI	CCGCGG	1 cut(s)	535
LmnI	GCTCC	8 cut(s)	104, 203, 419, 488, 533, 927, 986, 1007
Lsp1109I	GCAGC	4 cut(s)	154, 157, 160, 1008
MaeI	CTAG	3 cut(s)	183, 990, 1082
MaeII	ACGT	4 cut(s)	90, 330, 1068, 1146
MaeIII	GTNAC	2 cut(s)	940, 1120
MboII	GAAGA	7 cut(s)	379, 517, 602, 605, 626, 663, 672
MfeI	CAATTG	1 cut(s)	885
MflI	RGATCY	7 cut(s)	39, 239, 263, 497, 507, 738, 862
MhlI	GDGCHC	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	710
MlyI	GAGTC	3 cut(s)	344, 452, 846
MmeI	TCCRAC	2 cut(s)	67, 217
MroI	TCCGGA	1 cut(s)	893
MroNI	GCCGGC	1 cut(s)	410
MroXI	GAANNNNTTC	2 cut(s)	196, 600
MseI	TTAA	1 cut(s)	1180
MslI	CAYNNNNRTG	1 cut(s)	776
MspA1I	CMGCKG	2 cut(s)	534, 1033
MspR9I	CCNGG	4 cut(s)	56, 495, 636, 652
MunI	CAATTG	1 cut(s)	885
MvnI	CGCG	7 cut(s)	14, 65, 348, 456, 534, 621, 1157
NaeI	GCCGGC	1 cut(s)	412
NarI	GGCGCC	1 cut(s)	710
NciI	CCSGG	4 cut(s)	56, 495, 636, 652
NgoMIV	GCCGGC	1 cut(s)	410
NheI	GCTAGC	1 cut(s)	182
NlaIII	CATG	2 cut(s)	570, 845
NlaIV	GGNNCC	9 cut(s)	41, 241, 415, 484, 499, 529, 711, 929, 1029
NmeAIII	GCCGAG	1 cut(s)	63
NmuCI	GTSAC	2 cut(s)	940, 1120
NruI	TCGCGA	1 cut(s)	621
PceI	AGGCCT	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	618
PdiI	GCCGGC	1 cut(s)	412
PdmI	GAANNNNTTC	2 cut(s)	196, 600
PfeI	GAWTC	3 cut(s)	221, 474, 668
Ple19I	CGATCG	1 cut(s)	210
PleI	GAGTC	3 cut(s)	344, 452, 845
PluTI	GGCGCC	1 cut(s)	713
PpsI	GAGTC	3 cut(s)	344, 452, 845
Psp1406I	AACGTT	1 cut(s)	1146
PspN4I	GGNNCC	9 cut(s)	41, 241, 415, 484, 499, 529, 711, 929, 1029
PsuI	RGATCY	7 cut(s)	39, 239, 263, 497, 507, 738, 862
PvuI	CGATCG	1 cut(s)	210
RruI	TCGCGA	1 cut(s)	621
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	776
SacII	CCGCGG	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	1180
SchI	GAGTC	3 cut(s)	344, 452, 846
ScrFI	CCNGG	4 cut(s)	56, 495, 636, 652
SduI	GDGCHC	1 cut(s)	341
SfoI	GGCGCC	1 cut(s)	711
Sfr303I	CCGCGG	1 cut(s)	535
SgrBI	CCGCGG	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	2 cut(s)	488, 1160
SmoI	CTYRAG	2 cut(s)	488, 1160
SpeI	ACTAGT	1 cut(s)	1081
SseBI	AGGCCT	1 cut(s)	600
SspDI	GGCGCC	1 cut(s)	709
SspMI	CTAG	3 cut(s)	183, 990, 1082
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	4 cut(s)	54, 493, 634, 650
TaaI	ACNGT	3 cut(s)	799, 901, 946
TaiI	ACGT	4 cut(s)	93, 333, 1071, 1149
TaqI	TCGA	6 cut(s)	210, 472, 588, 606, 1110, 1128
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	6 cut(s)	116, 318, 447, 537, 558, 1033
TfiI	GAWTC	3 cut(s)	221, 474, 668
Tru1I	TTAA	1 cut(s)	1180
Tru9I	TTAA	1 cut(s)	1180
TscAI	CASTG	2 cut(s)	223, 802
TseFI	GTSAC	2 cut(s)	940, 1120
TseI	GCWGC	4 cut(s)	167, 170, 173, 1021
Tsp45I	GTSAC	2 cut(s)	940, 1120
TspGWI	ACGGA	3 cut(s)	427, 775, 960
TspRI	CASTG	2 cut(s)	223, 802
XapI	RAATTY	4 cut(s)	119, 803, 966, 1094
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	2 cut(s)	196, 600
XspI	CTAG	3 cut(s)	183, 990, 1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.