Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003196

Physical Location & Seq

Genomic Coordinates Reverse (-)

65722149 .. 65723979

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG489700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCACGCCAAGACCGACTCCGAGGTCACAAGCCTCGCCCCATCCTCCCCTACCCGATCCCCCCGCCGCCCAGTCTACTACGTCCAGAGCCCCTCCCGCGACTCCCACGACGGCGAAAAGACCACCACCTCTTTTCAGTCCACCCCCGTCCTCAGCCCCGCCGGCTCCCCTCCCCACTCCCACTCCTCCGTCGGCCGCCACTCCCGCGACTCCTCCTCCACCCGATTCTCCGGCTCCCTCAAGCCCGGATCCAAGAAGATCCAGCCCAACAACGACGGCTCCCGCGGCCACCACCGCAAGGGCGGCCACAAGGCATGGAAGGACTGCGCTGTCATCGAGGAAGAAGGCCTTCTCGACGACGAAGATCGCGAACGAGGCTTCCCCAGGCGATGTTATTTCCCGGCTTTCGTTCTCGGATTCTTCCTCCTCTTCACCATGTTCTCTCTCATTCTTTACGGCGCCAGTAAGCCCATGAAGCCCAAGATCACCATGAAGAGCGTTAGATTTGAACAATTCAAGATCCAAGCGGGTTCTGACAACACCGGAGTAGCCACCGAAATGATCTCCGTCAACTCCACCGTGAAATTCACATTCCGCAACACCGGCACATTTTTCGGAGTCCATGTCTCGCCAAAGCCTCTAGATCTATCCTACTCCCAAATCACAATTGCCTCCGGAACTGTCAAAAAGTTTTATCAATCACGGAGGAGCCAGAGATCGGTGACGGTATCAGTATTCGGCGACAAAATTCCGTTATACGGGAGTGGAGCTAGTATCAGTAGCTCCACAGGGACGACACTGCTGCCGGTGCCGCTGAAATTGGACTTCTTGATCAAATCCAGAGCCTACGTTTTGGGCAAACTAGTGAAGCCCAAATTCAACAGGCGGGTCGAGTGCATTGTGACTTTCGATCCCAAAAAGCTCAACGTTGCAATCGCGCTCAAGAATTGCACCTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

320

Amino Acids

35.34

Weight (kDa)

10.03

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45688 AT1G45688
fragaria_vesca	FvH4_1g16160 FvH4_1g16160 FvH4_1g16160 FvH4_2g34240 FvH4_2g34240
malus_domestica	MD02G1173700.v1.1 MD08G1098400.v1.1 MD15G1080900.v1.1
prunus_persica	Prupe.1G433700_v2.0.a1 Prupe.7G132000_v2.0.a1 Prupe.7G132000_v2.0.a1
pyrus_communis	pycom08g08020 pycom15g07540
rosa_chinensis	RchiOBHm_Chr2g0105841 RchiOBHm_Chr6g0308181
rosa_laevigata	RLG00000010661 RLG00000017464
rosa_multiflora	Rmu_sc0004386.1_g000024 Rmu_sc0005706.1_g000011 Rmu_sc0010389.1_g000008
rosa_roxburghii	Rroxscaffold_2G00137840 Rroxscaffold_7G00160380 Rroxscaffold_7G00160470
rosa_rugosa	Rorug02G0130800 Rorug06G0364500
rosa_samantha	Rh2AG181900 Rh2BG191700 Rh2CG186300 Rh2DG188300 Rh6AG473700 Rh6BG484500 Rh6CG489700 Rh6DG475700
rosa_wichuraiana	Rw2G014260 Rw6G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	23, 329
AccB1I	GGYRCC	2 cut(s)	458, 808
AccI	GTMKAC	1 cut(s)	75
AccII	CGCG	5 cut(s)	99, 207, 285, 369, 938
AccIII	TCCGGA	1 cut(s)	674
AclI	AACGTT	1 cut(s)	927
AclWI	GGATC	6 cut(s)	51, 243, 253, 256, 514, 905
AcoI	YGGCCR	3 cut(s)	193, 286, 304
AcsI	RAATTY	3 cut(s)	584, 747, 875
AcyI	GRCGYC	1 cut(s)	459
AfiI	CCNNNNNNNGG	3 cut(s)	298, 718, 758
AgsI	TTSAA	3 cut(s)	509, 517, 880
AhlI	ACTAGT	1 cut(s)	862
AjnI	CCWGG	1 cut(s)	383
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	3 cut(s)	770, 783, 922
AluI	AGCT	3 cut(s)	770, 783, 922
Alw26I	GTCTC	1 cut(s)	631
AlwI	GGATC	6 cut(s)	51, 243, 253, 256, 514, 905
Aor13HI	TCCGGA	1 cut(s)	674
AoxI	GGCC	4 cut(s)	193, 286, 304, 346
ApeKI	GCWGC	1 cut(s)	802
ApoI	RAATTY	3 cut(s)	584, 747, 875
Asp700I	GAANNNNTTC	1 cut(s)	348
AspLEI	GCGC	3 cut(s)	329, 461, 940
AsuC2I	CCSGG	2 cut(s)	246, 401
AsuHPI	GGTGA	3 cut(s)	424, 478, 733
BamHI	GGATCC	1 cut(s)	248
BanI	GGYRCC	2 cut(s)	458, 808
BanII	GRGCYC	1 cut(s)	92
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	789
BccI	CCATC	1 cut(s)	49
BceAI	ACGGC	3 cut(s)	127, 292, 472
BcgI	CGANNNNNNTGC	4 cut(s)	595, 629, 784, 818
BciT130I	CCWGG	1 cut(s)	385
BclI	TGATCA	1 cut(s)	831
BcnI	CCSGG	2 cut(s)	246, 401
BcoDI	GTCTC	1 cut(s)	631
BcuI	ACTAGT	1 cut(s)	862
BfaI	CTAG	3 cut(s)	641, 771, 863
BfoI	RGCGCY	1 cut(s)	462
BglI	GCCNNNNNGGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	6 cut(s)	67, 196, 286, 304, 803, 812
BlsI	GCNGC	6 cut(s)	68, 197, 287, 305, 804, 813
Bme1390I	CCNGG	3 cut(s)	246, 385, 401
BmiI	GGNNCC	7 cut(s)	166, 235, 250, 280, 460, 710, 810
BmrFI	CCNGG	3 cut(s)	246, 385, 401
BmrI	ACTGGG	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	65
Bpu10I	CCTNAGC	1 cut(s)	152
BpuEI	CTTGAG	2 cut(s)	224, 926
BpuMI	CCSGG	2 cut(s)	246, 401
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	3 cut(s)	21, 283, 383
BsaWI	WCCGGW	2 cut(s)	542, 674
BsaXI	ACNNNNNCTCC	8 cut(s)	167, 197, 200, 230, 263, 293, 609, 639
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 718, 758
Bse118I	RCCGGY	3 cut(s)	161, 602, 805
Bse1I	ACTGG	2 cut(s)	71, 462
BseAI	TCCGGA	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	385
BseDI	CCNNGG	3 cut(s)	21, 283, 383
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	3 cut(s)	298, 718, 758
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	2 cut(s)	71, 462
BseRI	GAGGAG	5 cut(s)	175, 202, 205, 416, 721
BseX3I	CGGCCG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	789
Bsh1236I	CGCG	5 cut(s)	99, 207, 285, 369, 938
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	4 cut(s)	195, 288, 306, 348
BshNI	GGYRCC	2 cut(s)	458, 808
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	8 cut(s)	162, 231, 246, 401, 543, 603, 675, 806
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	3 cut(s)	298, 718, 758
BsmAI	GTCTC	1 cut(s)	631
BsmFI	GGGAC	1 cut(s)	805
BsnI	GGCC	4 cut(s)	195, 288, 306, 348
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	674
Bsp68I	TCGCGA	1 cut(s)	369
BspANI	GGCC	4 cut(s)	195, 288, 306, 348
BspCNI	CTCAG	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	674
BspFNI	CGCG	5 cut(s)	99, 207, 285, 369, 938
BspLI	GGNNCC	7 cut(s)	166, 235, 250, 280, 460, 710, 810
BspPI	GGATC	6 cut(s)	51, 243, 253, 256, 514, 905
BspQI	GCTCTTC	1 cut(s)	488
BspT107I	GGYRCC	2 cut(s)	458, 808
BsrFI	RCCGGY	3 cut(s)	161, 602, 805
BsrI	ACTGG	2 cut(s)	71, 462
BssAI	RCCGGY	3 cut(s)	161, 602, 805
BssECI	CCNNGG	3 cut(s)	21, 283, 383
BssNI	GRCGYC	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	385
Bst4CI	ACNGT	3 cut(s)	580, 682, 727
Bst6I	CTCTTC	2 cut(s)	434, 488
BstACI	GRCGYC	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	6, 163
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	41
BstFNI	CGCG	5 cut(s)	99, 207, 285, 369, 938
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	3 cut(s)	329, 461, 940
BstMAI	GTCTC	1 cut(s)	631
BstMCI	CGRYCG	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	385
BstSCI	CCNGG	3 cut(s)	244, 383, 399
BstUI	CGCG	5 cut(s)	99, 207, 285, 369, 938
BstV1I	GCAGC	1 cut(s)	789
BstX2I	RGATCY	4 cut(s)	248, 258, 519, 643
BstYI	RGATCY	4 cut(s)	248, 258, 519, 643
BstZI	CGGCCG	1 cut(s)	193
BsuRI	GGCC	4 cut(s)	195, 288, 306, 348
BtgI	CCRYGG	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	1 cut(s)	797
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	6, 163
CfoI	GCGC	3 cut(s)	329, 461, 940
Cfr10I	RCCGGY	3 cut(s)	161, 602, 805
Cfr42I	CCGCGG	1 cut(s)	286
CviAII	CATG	5 cut(s)	315, 436, 472, 490, 623
DdeI	CTNAG	1 cut(s)	152
DinI	GGCGCC	1 cut(s)	460
DrdI	GACNNNNNNGTC	2 cut(s)	23, 329
DseDI	GACNNNNNNGTC	2 cut(s)	23, 329
EaeI	YGGCCR	3 cut(s)	193, 286, 304
EagI	CGGCCG	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	434, 488
EarI	CTCTTC	2 cut(s)	434, 488
EclXI	CGGCCG	1 cut(s)	193
Eco147I	AGGCCT	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	92
Eco52I	CGGCCG	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	383
EcoT38I	GRGCYC	1 cut(s)	92
EgeI	GGCGCC	1 cut(s)	460
EheI	GGCGCC	1 cut(s)	460
FaeI	CATG	5 cut(s)	318, 439, 475, 493, 626
FaiI	YATR	7 cut(s)	316, 437, 473, 491, 624, 757, 957
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	5 cut(s)	314, 435, 471, 489, 622
FauI	CCCGC	7 cut(s)	71, 104, 166, 212, 290, 520, 879
FbaI	TGATCA	1 cut(s)	831
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	6 cut(s)	67, 196, 286, 304, 803, 812
FokI	GGATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	6 cut(s)	67, 196, 286, 304, 803, 812
FspBI	CTAG	3 cut(s)	641, 771, 863
GlaI	GCGC	3 cut(s)	328, 460, 939
GluI	GCNGC	6 cut(s)	67, 196, 286, 304, 803, 812
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	4 cut(s)	195, 288, 306, 348
HapII	CCGG	8 cut(s)	162, 231, 246, 401, 543, 603, 675, 806
HhaI	GCGC	3 cut(s)	329, 461, 940
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	5 cut(s)	318, 439, 475, 493, 626
Hin6I	GCGC	3 cut(s)	327, 459, 938
HinP1I	GCGC	3 cut(s)	327, 459, 938
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	6 cut(s)	17, 101, 209, 225, 417, 618
HpaII	CCGG	8 cut(s)	162, 231, 246, 401, 543, 603, 675, 806
HphI	GGTGA	3 cut(s)	424, 478, 733
Hpy166II	GTNNAC	3 cut(s)	76, 141, 571
Hpy188I	TCNGA	4 cut(s)	22, 416, 535, 617
Hpy188III	TCNNGA	9 cut(s)	85, 353, 368, 517, 641, 675, 829, 840, 943
Hpy8I	GTNNAC	3 cut(s)	76, 141, 571
Hpy99I	CGWCG	5 cut(s)	113, 194, 278, 359, 362
HpyAV	CCTTC	3 cut(s)	313, 338, 359
HpyCH4III	ACNGT	3 cut(s)	580, 682, 727
HpyCH4IV	ACGT	3 cut(s)	81, 849, 927
HpyCH4V	TGCA	4 cut(s)	4, 897, 932, 951
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	3 cut(s)	81, 849, 927
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	5 cut(s)	318, 439, 475, 493, 626
HspAI	GCGC	3 cut(s)	327, 459, 938
KasI	GGCGCC	1 cut(s)	458
Kpn2I	TCCGGA	1 cut(s)	674
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	831
KspI	CCGCGG	1 cut(s)	286
LguI	GCTCTTC	1 cut(s)	488
LmnI	GCTCC	6 cut(s)	170, 239, 284, 708, 767, 788
Lsp1109I	GCAGC	1 cut(s)	789
MaeI	CTAG	3 cut(s)	641, 771, 863
MaeII	ACGT	3 cut(s)	81, 849, 927
MaeIII	GTNAC	3 cut(s)	25, 721, 901
MboII	GAAGA	6 cut(s)	268, 353, 374, 412, 421, 505
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	4 cut(s)	248, 258, 519, 643
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	8 cut(s)	512, 584, 666, 747, 818, 875, 946, 958
Mly113I	GGCGCC	1 cut(s)	459
MlyI	GAGTC	4 cut(s)	11, 95, 203, 627
MroI	TCCGGA	1 cut(s)	674
MroNI	GCCGGC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	1 cut(s)	961
MslI	CAYNNNNRTG	1 cut(s)	557
MspA1I	CMGCKG	2 cut(s)	285, 814
MspI	CCGG	8 cut(s)	162, 231, 246, 401, 543, 603, 675, 806
MspR9I	CCNGG	3 cut(s)	246, 385, 401
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	385
MvnI	CGCG	5 cut(s)	99, 207, 285, 369, 938
NaeI	GCCGGC	1 cut(s)	163
NarI	GGCGCC	1 cut(s)	459
NciI	CCSGG	2 cut(s)	246, 401
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	5 cut(s)	318, 439, 475, 493, 626
NlaIV	GGNNCC	7 cut(s)	166, 235, 250, 280, 460, 710, 810
NmuCI	GTSAC	3 cut(s)	25, 721, 901
NruI	TCGCGA	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 366
PdiI	GCCGGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	225, 417
PkrI	GCNGC	6 cut(s)	68, 197, 287, 305, 804, 813
PleI	GAGTC	4 cut(s)	11, 95, 203, 626
PluTI	GGCGCC	1 cut(s)	462
PpsI	GAGTC	4 cut(s)	11, 95, 203, 626
Psp1406I	AACGTT	1 cut(s)	927
Psp6I	CCWGG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	383
PspN4I	GGNNCC	7 cut(s)	166, 235, 250, 280, 460, 710, 810
PsuI	RGATCY	4 cut(s)	248, 258, 519, 643
RruI	TCGCGA	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	557
SacII	CCGCGG	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	961
SatI	GCNGC	6 cut(s)	67, 196, 286, 304, 803, 812
SchI	GAGTC	4 cut(s)	11, 95, 203, 627
ScrFI	CCNGG	3 cut(s)	246, 385, 401
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	9 cut(s)	27, 84, 131, 772, 785, 852, 924, 930, 956
SfoI	GGCGCC	1 cut(s)	460
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	2 cut(s)	239, 941
SmoI	CTYRAG	2 cut(s)	239, 941
SpeI	ACTAGT	1 cut(s)	862
Sse9I	AATT	8 cut(s)	512, 584, 666, 747, 818, 875, 946, 958
SseBI	AGGCCT	1 cut(s)	348
SspDI	GGCGCC	1 cut(s)	458
SspMI	CTAG	3 cut(s)	641, 771, 863
StuI	AGGCCT	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	244, 383, 399
TaaI	ACNGT	3 cut(s)	580, 682, 727
TaiI	ACGT	3 cut(s)	84, 852, 930
TaqI	TCGA	4 cut(s)	336, 354, 891, 909
TaqII	GACCGA	1 cut(s)	29
TasI	AATT	8 cut(s)	512, 584, 666, 747, 818, 875, 946, 958
TauI	GCSGC	5 cut(s)	69, 198, 288, 306, 814
TfiI	GAWTC	2 cut(s)	225, 417
Tru1I	TTAA	1 cut(s)	961
Tru9I	TTAA	1 cut(s)	961
TscAI	CASTG	1 cut(s)	804
TseFI	GTSAC	3 cut(s)	25, 721, 901
TseI	GCWGC	1 cut(s)	802
Tsp45I	GTSAC	3 cut(s)	25, 721, 901
TspDTI	ATGAA	2 cut(s)	488, 506
TspGWI	ACGGA	4 cut(s)	178, 556, 718, 741
TspRI	CASTG	1 cut(s)	804
XapI	RAATTY	3 cut(s)	584, 747, 875
XbaI	TCTAGA	1 cut(s)	640
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	3 cut(s)	641, 771, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.