Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003196

Physical Location & Seq

Genomic Coordinates Reverse (-)

11302559 .. 11303500

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0130800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGTTCAGCTAATGAACCCCTTCAGTCTTTTGGCTGAGAAACATGTCAAGGATCTCGTTGGTGCTGTCGAGGAAAAAGCAGAGGCTTCGTTTCTAGCAGCAGAGAAAAAGGAGAATGATGAGAAGAAGGAGAAACAGAAGCAGAAACAGAGACCGCGTCGACGTCCTGTTTCTTCAGTAGCAAAATCAAACTCTACCATCCCAATTAGTACTAGTACTGGCGGCGGCACTATGAAGTCCTCCAACGGCGGCCAACACCAACAGGAAGGTCCTGCGGATTCTGTTTCAGTCTCCAGTATTACTAGAACTGGAGAGAGTAAGAGTGAAGAAGCAAAGAAGACTACTAAAGAGGCTGATCCTGATGCTGAGGGATGGCAACTAGTACAGTATCAAACTGGAAAGAAAGGGCCTTGGAGTGGTAATCATGAGTCTGGTCAGACTCAGGAGAATCAAGGAGCTACTGGGAACAACCACGTCAACATGGAAGAGGGAATCAGGCAATTACAGGAGGTTGCTAGAGGAATGAATGGAAGCCAGGGTGTTATGCCCAGAAGGCCAAATATTAATGGAAGTGCGCGGCGAAGATTGCAAAAGAATAAGGCTGGAGCTGGCCAGGATCAACAAGTCCAAGCCAACAAGAATACTGCTGCTGCTTCTCCTGATGCTACTGAAACTGCTCCTGCTCAGAAGAAGTCAACTGTTACATACACCTTGAAAGAATTTGAGATGATGAAGAAGAACGACCATAGCGACAAATCTGATGAGCAGCCCCATCAGTCTTCAGAGAAAGATGATAGCTACAAAGGGCGGCGGAAACAGTGGGGTGGTAACAGATTCAATGGTGACATTGAAGATGTTTCACGAGCCACTGTAGAGAAGGCTGATGATACTTCATTTAGCTTGAATCCTGGTCAGTTTCCAGTCCTTGGAAAAGCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

313

Amino Acids

34.18

Weight (kDa)

9.22

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45688 AT1G45688
fragaria_vesca	FvH4_1g16160 FvH4_1g16160 FvH4_1g16160 FvH4_2g34240 FvH4_2g34240
malus_domestica	MD02G1173700.v1.1 MD08G1098400.v1.1 MD15G1080900.v1.1
prunus_persica	Prupe.1G433700_v2.0.a1 Prupe.7G132000_v2.0.a1 Prupe.7G132000_v2.0.a1
pyrus_communis	pycom08g08020 pycom15g07540
rosa_chinensis	RchiOBHm_Chr2g0105841 RchiOBHm_Chr6g0308181
rosa_laevigata	RLG00000010661 RLG00000017464
rosa_multiflora	Rmu_sc0004386.1_g000024 Rmu_sc0005706.1_g000011 Rmu_sc0010389.1_g000008
rosa_roxburghii	Rroxscaffold_2G00137840 Rroxscaffold_7G00160380 Rroxscaffold_7G00160470
rosa_rugosa	Rorug02G0130800 Rorug06G0364500
rosa_samantha	Rh2AG181900 Rh2BG191700 Rh2CG186300 Rh2DG188300 Rh6AG473700 Rh6BG484500 Rh6CG489700 Rh6DG475700
rosa_wichuraiana	Rw2G014260 Rw6G041300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	926
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	2 cut(s)	157, 577
AciI	CCGC	8 cut(s)	155, 222, 225, 249, 275, 577, 808, 811
AclWI	GGATC	3 cut(s)	60, 350, 624
AcoI	YGGCCR	2 cut(s)	250, 610
AcsI	RAATTY	1 cut(s)	719
AcuI	CTGAAG	3 cut(s)	7, 159, 765
AcyI	GRCGYC	1 cut(s)	163
AfaI	GTAC	3 cut(s)	211, 217, 384
AfiI	CCNNNNNNNGG	2 cut(s)	416, 926
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	715, 838, 851, 904
AhlI	ACTAGT	2 cut(s)	212, 379
AjiI	CACGTC	1 cut(s)	475
AjnI	CCWGG	3 cut(s)	534, 612, 907
AluBI	AGCT	5 cut(s)	10, 458, 608, 798, 900
AluI	AGCT	5 cut(s)	10, 458, 608, 798, 900
Alw26I	GTCTC	2 cut(s)	145, 295
AlwI	GGATC	3 cut(s)	60, 350, 624
AoxI	GGCC	4 cut(s)	250, 407, 554, 610
ApeKI	GCWGC	4 cut(s)	98, 647, 650, 766
ApoI	RAATTY	1 cut(s)	719
AseI	ATTAAT	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	2 cut(s)	269, 407
AsuHPI	GGTGA	1 cut(s)	854
AvaII	GGWCC	1 cut(s)	269
BalI	TGGCCA	1 cut(s)	612
BauI	CACGAG	1 cut(s)	861
BbsI	GAAGAC	2 cut(s)	344, 771
BbvCI	CCTCAGC	1 cut(s)	366
BbvI	GCAGC	4 cut(s)	110, 634, 637, 778
BccI	CCATC	3 cut(s)	206, 366, 780
BceAI	ACGGC	1 cut(s)	262
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	3 cut(s)	536, 614, 909
BcoDI	GTCTC	2 cut(s)	145, 295
BcuI	ACTAGT	2 cut(s)	212, 379
BfaI	CTAG	5 cut(s)	95, 213, 303, 380, 516
BfmI	CTRYAG	1 cut(s)	870
BglI	GCCNNNNNGGC	1 cut(s)	553
BisI	GCNGC	9 cut(s)	99, 223, 226, 250, 578, 648, 651, 767, 809
BlsI	GCNGC	9 cut(s)	100, 224, 227, 251, 579, 649, 652, 768, 810
BmcAI	AGTACT	2 cut(s)	211, 217
Bme1390I	CCNGG	3 cut(s)	536, 614, 909
Bme18I	GGWCC	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	269, 407
BmrFI	CCNGG	3 cut(s)	536, 614, 909
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	2 cut(s)	352, 652
BmuI	ACTGGG	1 cut(s)	471
BpiI	GAAGAC	2 cut(s)	344, 771
BpmI	CTGGAG	3 cut(s)	277, 330, 624
Bpu10I	CCTNAGC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	3 cut(s)	410, 535, 925
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 926
Bse1I	ACTGG	6 cut(s)	223, 294, 313, 400, 466, 920
BseBI	CCWGG	3 cut(s)	536, 614, 909
BseDI	CCNNGG	3 cut(s)	410, 535, 925
BseGI	GGATG	2 cut(s)	198, 377
BseLI	CCNNNNNNNGG	2 cut(s)	416, 926
BseMII	CTCAG	4 cut(s)	27, 357, 455, 698
BseNI	ACTGG	6 cut(s)	223, 294, 313, 400, 466, 920
BseXI	GCAGC	4 cut(s)	110, 634, 637, 778
Bsh1236I	CGCG	2 cut(s)	157, 577
BshFI	GGCC	4 cut(s)	252, 409, 556, 612
BslI	CCNNNNNNNGG	2 cut(s)	416, 926
BsmAI	GTCTC	2 cut(s)	145, 295
BsnI	GGCC	4 cut(s)	252, 409, 556, 612
Bso31I	GGTCTC	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	52, 355, 616
BspACI	CCGC	8 cut(s)	155, 222, 225, 249, 275, 577, 808, 811
BspANI	GGCC	4 cut(s)	252, 409, 556, 612
BspCNI	CTCAG	4 cut(s)	28, 358, 454, 697
BspFNI	CGCG	2 cut(s)	157, 577
BspHI	TCATGA	1 cut(s)	424
BspPI	GGATC	3 cut(s)	60, 350, 624
BspTNI	GGTCTC	1 cut(s)	145
BsrI	ACTGG	6 cut(s)	223, 294, 313, 400, 466, 920
BssECI	CCNNGG	3 cut(s)	410, 535, 925
BssMI	GATC	3 cut(s)	52, 355, 616
BssNI	GRCGYC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	861
BssT1I	CCWWGG	2 cut(s)	410, 925
Bst2BI	CACGAG	1 cut(s)	861
Bst2UI	CCWGG	3 cut(s)	536, 614, 909
Bst4CI	ACNGT	4 cut(s)	387, 700, 819, 871
Bst6I	CTCTTC	1 cut(s)	480
BstACI	GRCGYC	1 cut(s)	163
BstC8I	GCNNGC	1 cut(s)	610
BstDEI	CTNAG	4 cut(s)	36, 366, 441, 684
BstF5I	GGATG	2 cut(s)	198, 377
BstFNI	CGCG	2 cut(s)	157, 577
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	3 cut(s)	55, 358, 619
BstMAI	GTCTC	2 cut(s)	145, 295
BstMBI	GATC	3 cut(s)	52, 355, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	553, 586
BstNI	CCWGG	3 cut(s)	536, 614, 909
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	3 cut(s)	534, 612, 907
BstSFI	CTRYAG	1 cut(s)	870
BstUI	CGCG	2 cut(s)	157, 577
BstV1I	GCAGC	4 cut(s)	110, 634, 637, 778
BstV2I	GAAGAC	2 cut(s)	344, 771
BstX2I	RGATCY	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	4 cut(s)	252, 409, 556, 612
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	2 cut(s)	198, 377
BtsIMutI	CAGTG	2 cut(s)	824, 867
Cac8I	GCNNGC	1 cut(s)	610
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	2 cut(s)	269, 407
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	210, 216, 383
CviAII	CATG	3 cut(s)	44, 425, 481
CviQI	GTAC	3 cut(s)	210, 216, 383
DdeI	CTNAG	4 cut(s)	36, 366, 441, 684
DpnI	GATC	3 cut(s)	54, 357, 618
DpnII	GATC	3 cut(s)	52, 355, 616
EaeI	YGGCCR	2 cut(s)	250, 610
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	826
Eco130I	CCWWGG	2 cut(s)	410, 925
Eco31I	GGTCTC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	3 cut(s)	7, 159, 765
EcoO109I	RGGNCCY	2 cut(s)	269, 407
EcoRII	CCWGG	3 cut(s)	534, 612, 907
EcoT14I	CCWWGG	2 cut(s)	410, 925
ErhI	CCWWGG	2 cut(s)	410, 925
FaeI	CATG	3 cut(s)	47, 428, 484
FaiI	YATR	7 cut(s)	45, 233, 426, 482, 545, 706, 747
FatI	CATG	3 cut(s)	43, 424, 480
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	9 cut(s)	99, 223, 226, 250, 578, 648, 651, 767, 809
FokI	GGATG	2 cut(s)	185, 384
Fsp4HI	GCNGC	9 cut(s)	99, 223, 226, 250, 578, 648, 651, 767, 809
FspBI	CTAG	5 cut(s)	95, 213, 303, 380, 516
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	9 cut(s)	99, 223, 226, 250, 578, 648, 651, 767, 809
GsuI	CTGGAG	3 cut(s)	277, 330, 624
HaeIII	GGCC	4 cut(s)	252, 409, 556, 612
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	577
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	47, 428, 484
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	3 cut(s)	161, 478, 696
HindII	GTYRAC	3 cut(s)	161, 478, 696
HinfI	GANTC	7 cut(s)	278, 428, 439, 448, 492, 834, 904
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	3 cut(s)	161, 478, 696
Hpy188I	TCNGA	4 cut(s)	438, 687, 760, 784
Hpy188III	TCNNGA	5 cut(s)	359, 425, 443, 659, 861
Hpy8I	GTNNAC	3 cut(s)	161, 478, 696
Hpy99I	CGWCG	2 cut(s)	162, 165
HpyAV	CCTTC	5 cut(s)	31, 121, 260, 546, 871
HpyCH4III	ACNGT	4 cut(s)	387, 700, 819, 871
HpyCH4IV	ACGT	2 cut(s)	163, 474
HpyCH4V	TGCA	1 cut(s)	589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	553, 586
HpyF3I	CTNAG	4 cut(s)	36, 366, 441, 684
HpySE526I	ACGT	2 cut(s)	163, 474
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	3 cut(s)	47, 428, 484
HspAI	GCGC	1 cut(s)	575
Kzo9I	GATC	3 cut(s)	52, 355, 616
LmnI	GCTCC	3 cut(s)	455, 605, 682
Lsp1109I	GCAGC	4 cut(s)	110, 634, 637, 778
LweI	GCATC	2 cut(s)	352, 652
MaeI	CTAG	5 cut(s)	95, 213, 303, 380, 516
MaeII	ACGT	2 cut(s)	163, 474
MaeIII	GTNAC	3 cut(s)	700, 827, 842
MalI	GATC	3 cut(s)	54, 357, 618
MboI	GATC	3 cut(s)	52, 355, 616
MflI	RGATCY	1 cut(s)	52
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	3 cut(s)	204, 500, 719
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	2 cut(s)	433, 437
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	8 cut(s)	64, 76, 250, 343, 361, 481, 502, 512
Mox20I	TGGCCA	1 cut(s)	612
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	1 cut(s)	564
Msp20I	TGGCCA	1 cut(s)	612
MspR9I	CCNGG	3 cut(s)	536, 614, 909
MvaI	CCWGG	3 cut(s)	536, 614, 909
MvnI	CGCG	2 cut(s)	157, 577
MwoI	GCNNNNNNNGC	2 cut(s)	553, 586
NdeII	GATC	3 cut(s)	52, 355, 616
NlaIII	CATG	3 cut(s)	47, 428, 484
NmuCI	GTSAC	1 cut(s)	842
NspI	RCATGY	1 cut(s)	47
PagI	TCATGA	1 cut(s)	424
PciI	ACATGT	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	747
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	5 cut(s)	278, 448, 492, 834, 904
PflFI	GACNNNGTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	926
PkrI	GCNGC	9 cut(s)	100, 224, 227, 251, 579, 649, 652, 768, 810
PleI	GAGTC	2 cut(s)	433, 436
PpsI	GAGTC	2 cut(s)	433, 436
PpuMI	RGGWCCY	1 cut(s)	269
PscI	ACATGT	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	269
Psp6I	CCWGG	3 cut(s)	534, 612, 907
PspGI	CCWGG	3 cut(s)	534, 612, 907
PspPI	GGNCC	2 cut(s)	269, 407
PspPPI	RGGWCCY	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	156
RsaI	GTAC	3 cut(s)	211, 217, 384
RsaNI	GTAC	3 cut(s)	210, 216, 383
SalI	GTCGAC	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	9 cut(s)	99, 223, 226, 250, 578, 648, 651, 767, 809
Sau3AI	GATC	3 cut(s)	52, 355, 616
Sau96I	GGNCC	2 cut(s)	269, 407
ScaI	AGTACT	2 cut(s)	211, 217
SchI	GAGTC	2 cut(s)	433, 437
ScrFI	CCNGG	3 cut(s)	536, 614, 909
SfaNI	GCATC	2 cut(s)	352, 652
SfcI	CTRYAG	1 cut(s)	870
SgrDI	CGTCGACG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	269
SpeI	ACTAGT	2 cut(s)	212, 379
Sse9I	AATT	3 cut(s)	204, 500, 719
SsiI	CCGC	8 cut(s)	155, 222, 225, 249, 275, 577, 808, 811
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	5 cut(s)	95, 213, 303, 380, 516
StyD4I	CCNGG	3 cut(s)	534, 612, 907
StyI	CCWWGG	2 cut(s)	410, 925
TaaI	ACNGT	4 cut(s)	387, 700, 819, 871
TaiI	ACGT	2 cut(s)	166, 477
TaqI	TCGA	2 cut(s)	69, 160
TasI	AATT	3 cut(s)	204, 500, 719
TatI	WGTACW	3 cut(s)	209, 215, 382
TauI	GCSGC	5 cut(s)	225, 228, 252, 580, 811
TfiI	GAWTC	5 cut(s)	278, 448, 492, 834, 904
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	2 cut(s)	824, 874
TseFI	GTSAC	1 cut(s)	842
TseI	GCWGC	4 cut(s)	98, 647, 650, 766
Tsp45I	GTSAC	1 cut(s)	842
TspDTI	ATGAA	5 cut(s)	29, 248, 539, 746, 882
TspRI	CASTG	2 cut(s)	824, 874
Tth111I	GACNNNGTC	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	926
VpaK11BI	GGWCC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	160
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	5 cut(s)	95, 213, 303, 380, 516
ZraI	GACGTC	1 cut(s)	164
ZrmI	AGTACT	2 cut(s)	211, 217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.