Rroxscaffold_7G00160470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003196
Physical Location & Seq
Forward (+)
3435584 .. 3437320
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160470.1

Sequence Viewer

Length: 966 bp
ATGCACGCCAAGACCGACTCCGAGGTCACAAGCCTCGCCCCATCCTCCCCTACCCGATCCCCCCGCCGCCCAGTCTACTACGTCCAGAGCCCCTCCCGCGACTCCCACGACGGCGAGAAGACCACCACCTCCTTTCAGTCCACCCCCGTCCTCAGCCCCGCCGGCTCCCCTCCCCACTCCCACTCCTCCGTCGGCCGCCACTCCCGCGACTCCTCCTCCACTCGATTCTCCGGCTCCCTCAAGCCCGGATCCAAGAAGATCCAGCCCAACAACGACGGCTCCCGCGGCCACCACCACCGCAAGGGCGGCCACAAGGCATGGAAGGACTGCGCTGTCATCGAAGAAGAAGGCCTTCTCGACGACGAAGATCGCGAACGAGGCTTCCCCCGGCGATGTTATTTCCCGGCTTTCGTTCTCGGATTCTTCCTCCTCTTCACCATATTCTCTCTCATTCTCTACGGCGCCAGTAAGCCCATGAAGCCCAAGATCACCATGAAGAGCGTTAGATTTGAACAATTCAAGATCCAAGCGGGTTCAGACAACACCGGAGTAGCCACCGAAATGATCTCCGTCAACTCCACTGTGAAATTCACATTCCGCAACACCGGCACATTTTTCGGAGTCCATGTCTCGCCAAAGCCTCTGGATCTATCCTACTCCCAAATTACAATTGCCTCCGGAACTGTCAAGAAGTTTTATCAATCAAGGAGGAGCCAGAGATCGGTGACGGTATCAGTATTCGGCGACAAAATTCCGTTATACGGGAGTGGAGCTAGTATCAGTAGCTCCACAGGGACGACATTGCTGCCGGTGCCGCTGAAATTGGACTTCTTGATCAAATCCAGGGCCTACGTTTTGGGCAAACTAGTGAAGCCCAAATTCAACAGGCGGGTCGAGTGCATTGTCACTTTCGATCCCAAAAAGCTCAACGTTGCAATCGCGCTCAAGAATTGCACCTATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

321

Amino Acids

35.46

Weight (kDa)

10.03

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 23, 332
AccB1I GGYRCC 2 cut(s) 461, 811
AccI GTMKAC 1 cut(s) 75
AccII CGCG 5 cut(s) 99, 207, 285, 372, 941
AccIII TCCGGA 1 cut(s) 677
AclI AACGTT 1 cut(s) 930
AclWI GGATC 7 cut(s) 51, 243, 253, 256, 517, 654, 908
AcoI YGGCCR 3 cut(s) 193, 286, 307
AcsI RAATTY 3 cut(s) 587, 750, 878
AcyI GRCGYC 1 cut(s) 462
AfiI CCNNNNNNNGG 3 cut(s) 301, 721, 761
AgsI TTSAA 3 cut(s) 512, 520, 883
AhlI ACTAGT 1 cut(s) 865
AjnI CCWGG 1 cut(s) 842
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 3 cut(s) 773, 786, 925
AluI AGCT 3 cut(s) 773, 786, 925
Alw26I GTCTC 1 cut(s) 634
AlwI GGATC 7 cut(s) 51, 243, 253, 256, 517, 654, 908
Aor13HI TCCGGA 1 cut(s) 677
AoxI GGCC 5 cut(s) 193, 286, 307, 349, 846
ApeKI GCWGC 1 cut(s) 805
ApoI RAATTY 3 cut(s) 587, 750, 878
Asp700I GAANNNNTTC 1 cut(s) 351
AspLEI GCGC 3 cut(s) 332, 464, 943
AspS9I GGNCC 1 cut(s) 846
AsuC2I CCSGG 3 cut(s) 246, 388, 404
AsuHPI GGTGA 3 cut(s) 427, 481, 736
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 2 cut(s) 461, 811
BanII GRGCYC 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 125
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 792
BccI CCATC 1 cut(s) 49
BceAI ACGGC 3 cut(s) 127, 292, 475
BcgI CGANNNNNNTGC 4 cut(s) 598, 632, 787, 821
BciT130I CCWGG 1 cut(s) 844
BclI TGATCA 1 cut(s) 834
BcnI CCSGG 3 cut(s) 246, 388, 404
BcoDI GTCTC 1 cut(s) 634
BcuI ACTAGT 1 cut(s) 865
BfaI CTAG 2 cut(s) 774, 866
BfoI RGCGCY 1 cut(s) 465
BglI GCCNNNNNGGC 1 cut(s) 162
BisI GCNGC 6 cut(s) 67, 196, 286, 307, 806, 815
BlsI GCNGC 6 cut(s) 68, 197, 287, 308, 807, 816
Bme1390I CCNGG 4 cut(s) 246, 388, 404, 844
BmgT120I GGNCC 1 cut(s) 846
BmiI GGNNCC 7 cut(s) 166, 235, 250, 280, 463, 713, 813
BmrFI CCNGG 4 cut(s) 246, 388, 404, 844
BmrI ACTGGG 1 cut(s) 65
BmuI ACTGGG 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 125
Bpu10I CCTNAGC 1 cut(s) 152
BpuEI CTTGAG 2 cut(s) 224, 929
BpuMI CCSGG 3 cut(s) 246, 388, 404
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 4 cut(s) 21, 283, 386, 843
BsaWI WCCGGW 2 cut(s) 545, 677
BsaXI ACNNNNNCTCC 8 cut(s) 167, 197, 200, 230, 263, 293, 612, 642
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 721, 761
Bse118I RCCGGY 3 cut(s) 161, 605, 808
Bse1I ACTGG 2 cut(s) 71, 465
Bse3DI GCAATG 1 cut(s) 800
BseAI TCCGGA 1 cut(s) 677
BseBI CCWGG 1 cut(s) 844
BseDI CCNNGG 4 cut(s) 21, 283, 386, 843
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 3 cut(s) 301, 721, 761
BseMI GCAATG 1 cut(s) 800
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 2 cut(s) 71, 465
BseRI GAGGAG 5 cut(s) 175, 202, 205, 419, 724
BseX3I CGGCCG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 792
Bsh1236I CGCG 5 cut(s) 99, 207, 285, 372, 941
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 5 cut(s) 195, 288, 309, 351, 848
BshNI GGYRCC 2 cut(s) 461, 811
BsiEI CGRYCG 1 cut(s) 196
BsiSI CCGG 9 cut(s) 162, 231, 246, 388, 404, 546, 606, 678, 809
BslFI GGGAC 1 cut(s) 808
BslI CCNNNNNNNGG 3 cut(s) 301, 721, 761
BsmAI GTCTC 1 cut(s) 634
BsmFI GGGAC 1 cut(s) 808
BsnI GGCC 5 cut(s) 195, 288, 309, 351, 848
Bsp1286I GDGCHC 1 cut(s) 92
Bsp13I TCCGGA 1 cut(s) 677
Bsp68I TCGCGA 1 cut(s) 372
BspANI GGCC 5 cut(s) 195, 288, 309, 351, 848
BspCNI CTCAG 1 cut(s) 165
BspEI TCCGGA 1 cut(s) 677
BspFNI CGCG 5 cut(s) 99, 207, 285, 372, 941
BspLI GGNNCC 7 cut(s) 166, 235, 250, 280, 463, 713, 813
BspPI GGATC 7 cut(s) 51, 243, 253, 256, 517, 654, 908
BspQI GCTCTTC 1 cut(s) 491
BspT107I GGYRCC 2 cut(s) 461, 811
BsrDI GCAATG 1 cut(s) 800
BsrFI RCCGGY 3 cut(s) 161, 605, 808
BsrI ACTGG 2 cut(s) 71, 465
BssAI RCCGGY 3 cut(s) 161, 605, 808
BssECI CCNNGG 4 cut(s) 21, 283, 386, 843
BssNI GRCGYC 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 844
Bst4CI ACNGT 3 cut(s) 583, 685, 730
Bst6I CTCTTC 2 cut(s) 437, 491
BstACI GRCGYC 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 6, 163
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 1 cut(s) 41
BstFNI CGCG 5 cut(s) 99, 207, 285, 372, 941
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 3 cut(s) 332, 464, 943
BstMAI GTCTC 1 cut(s) 634
BstMCI CGRYCG 1 cut(s) 196
BstNI CCWGG 1 cut(s) 844
BstSCI CCNGG 4 cut(s) 244, 386, 402, 842
BstUI CGCG 5 cut(s) 99, 207, 285, 372, 941
BstV1I GCAGC 1 cut(s) 792
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 4 cut(s) 248, 258, 522, 646
BstYI RGATCY 4 cut(s) 248, 258, 522, 646
BstZI CGGCCG 1 cut(s) 193
BsuRI GGCC 5 cut(s) 195, 288, 309, 351, 848
BtgI CCRYGG 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 406
BtsCI GGATG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 579
BtuMI TCGCGA 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 6, 163
CfoI GCGC 3 cut(s) 332, 464, 943
Cfr10I RCCGGY 3 cut(s) 161, 605, 808
Cfr13I GGNCC 1 cut(s) 846
Cfr42I CCGCGG 1 cut(s) 286
CviAII CATG 4 cut(s) 318, 475, 493, 626
DdeI CTNAG 1 cut(s) 152
DinI GGCGCC 1 cut(s) 463
DrdI GACNNNNNNGTC 2 cut(s) 23, 332
DseDI GACNNNNNNGTC 2 cut(s) 23, 332
EaeI YGGCCR 3 cut(s) 193, 286, 307
EagI CGGCCG 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 437, 491
EarI CTCTTC 2 cut(s) 437, 491
EclXI CGGCCG 1 cut(s) 193
Eco147I AGGCCT 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 92
Eco52I CGGCCG 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 846
EcoRII CCWGG 1 cut(s) 842
EcoT38I GRGCYC 1 cut(s) 92
EgeI GGCGCC 1 cut(s) 463
EheI GGCGCC 1 cut(s) 463
FaeI CATG 4 cut(s) 321, 478, 496, 629
FaiI YATR 7 cut(s) 319, 440, 476, 494, 627, 760, 960
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 808
FatI CATG 4 cut(s) 317, 474, 492, 625
FauI CCCGC 7 cut(s) 71, 104, 166, 212, 290, 523, 882
FbaI TGATCA 1 cut(s) 834
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 6 cut(s) 67, 196, 286, 307, 806, 815
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 6 cut(s) 67, 196, 286, 307, 806, 815
FspBI CTAG 2 cut(s) 774, 866
GlaI GCGC 3 cut(s) 331, 463, 942
GluI GCNGC 6 cut(s) 67, 196, 286, 307, 806, 815
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 5 cut(s) 195, 288, 309, 351, 848
HapII CCGG 9 cut(s) 162, 231, 246, 388, 404, 546, 606, 678, 809
HhaI GCGC 3 cut(s) 332, 464, 943
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 4 cut(s) 321, 478, 496, 629
Hin6I GCGC 3 cut(s) 330, 462, 941
HinP1I GCGC 3 cut(s) 330, 462, 941
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 6 cut(s) 17, 101, 209, 225, 420, 621
HpaII CCGG 9 cut(s) 162, 231, 246, 388, 404, 546, 606, 678, 809
HphI GGTGA 3 cut(s) 427, 481, 736
Hpy166II GTNNAC 3 cut(s) 76, 141, 574
Hpy188I TCNGA 4 cut(s) 22, 419, 538, 620
Hpy188III TCNNGA 9 cut(s) 85, 356, 371, 520, 644, 678, 688, 832, 946
Hpy8I GTNNAC 3 cut(s) 76, 141, 574
Hpy99I CGWCG 5 cut(s) 113, 194, 278, 362, 365
HpyAV CCTTC 3 cut(s) 316, 341, 362
HpyCH4III ACNGT 3 cut(s) 583, 685, 730
HpyCH4IV ACGT 3 cut(s) 81, 852, 930
HpyCH4V TGCA 4 cut(s) 4, 900, 935, 954
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 3 cut(s) 81, 852, 930
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 4 cut(s) 321, 478, 496, 629
HspAI GCGC 3 cut(s) 330, 462, 941
KasI GGCGCC 1 cut(s) 461
Kpn2I TCCGGA 1 cut(s) 677
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 834
KspI CCGCGG 1 cut(s) 286
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 6 cut(s) 170, 239, 284, 711, 770, 791
Lsp1109I GCAGC 1 cut(s) 792
MaeI CTAG 2 cut(s) 774, 866
MaeII ACGT 3 cut(s) 81, 852, 930
MaeIII GTNAC 3 cut(s) 25, 724, 904
MboII GAAGA 8 cut(s) 130, 268, 353, 356, 377, 415, 424, 508
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 4 cut(s) 248, 258, 522, 646
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 9 cut(s) 515, 587, 663, 669, 750, 821, 878, 949, 961
Mly113I GGCGCC 1 cut(s) 462
MlyI GAGTC 4 cut(s) 11, 95, 203, 630
MroI TCCGGA 1 cut(s) 677
MroNI GCCGGC 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 1 cut(s) 964
MslI CAYNNNNRTG 1 cut(s) 560
MspA1I CMGCKG 2 cut(s) 285, 817
MspI CCGG 9 cut(s) 162, 231, 246, 388, 404, 546, 606, 678, 809
MspR9I CCNGG 4 cut(s) 246, 388, 404, 844
MunI CAATTG 1 cut(s) 669
MvaI CCWGG 1 cut(s) 844
MvnI CGCG 5 cut(s) 99, 207, 285, 372, 941
NaeI GCCGGC 1 cut(s) 163
NarI GGCGCC 1 cut(s) 462
NciI CCSGG 3 cut(s) 246, 388, 404
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 4 cut(s) 321, 478, 496, 629
NlaIV GGNNCC 7 cut(s) 166, 235, 250, 280, 463, 713, 813
NmuCI GTSAC 3 cut(s) 25, 724, 904
NruI TCGCGA 1 cut(s) 372
PceI AGGCCT 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 491
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 369
PdiI GCCGGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 2 cut(s) 225, 420
PkrI GCNGC 6 cut(s) 68, 197, 287, 308, 807, 816
PleI GAGTC 4 cut(s) 11, 95, 203, 629
PluTI GGCGCC 1 cut(s) 465
PpsI GAGTC 4 cut(s) 11, 95, 203, 629
Psp1406I AACGTT 1 cut(s) 930
Psp6I CCWGG 1 cut(s) 842
PspGI CCWGG 1 cut(s) 842
PspN4I GGNNCC 7 cut(s) 166, 235, 250, 280, 463, 713, 813
PspPI GGNCC 1 cut(s) 846
PsuI RGATCY 4 cut(s) 248, 258, 522, 646
RruI TCGCGA 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 560
SacII CCGCGG 1 cut(s) 286
SapI GCTCTTC 1 cut(s) 491
SaqAI TTAA 1 cut(s) 964
SatI GCNGC 6 cut(s) 67, 196, 286, 307, 806, 815
Sau96I GGNCC 1 cut(s) 846
SchI GAGTC 4 cut(s) 11, 95, 203, 630
ScrFI CCNGG 4 cut(s) 246, 388, 404, 844
SduI GDGCHC 1 cut(s) 92
SetI ASST 9 cut(s) 27, 84, 131, 775, 788, 855, 927, 933, 959
SfoI GGCGCC 1 cut(s) 463
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 2 cut(s) 239, 944
SmoI CTYRAG 2 cut(s) 239, 944
SpeI ACTAGT 1 cut(s) 865
Sse9I AATT 9 cut(s) 515, 587, 663, 669, 750, 821, 878, 949, 961
SseBI AGGCCT 1 cut(s) 351
SspDI GGCGCC 1 cut(s) 461
SspMI CTAG 2 cut(s) 774, 866
StuI AGGCCT 1 cut(s) 351
StyD4I CCNGG 4 cut(s) 244, 386, 402, 842
TaaI ACNGT 3 cut(s) 583, 685, 730
TaiI ACGT 3 cut(s) 84, 855, 933
TaqI TCGA 5 cut(s) 223, 339, 357, 894, 912
TaqII GACCGA 1 cut(s) 29
TasI AATT 9 cut(s) 515, 587, 663, 669, 750, 821, 878, 949, 961
TauI GCSGC 5 cut(s) 69, 198, 288, 309, 817
TfiI GAWTC 2 cut(s) 225, 420
Tru1I TTAA 1 cut(s) 964
Tru9I TTAA 1 cut(s) 964
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 3 cut(s) 25, 724, 904
TseI GCWGC 1 cut(s) 805
Tsp45I GTSAC 3 cut(s) 25, 724, 904
TspDTI ATGAA 2 cut(s) 491, 509
TspGWI ACGGA 3 cut(s) 178, 559, 744
TspRI CASTG 1 cut(s) 586
XapI RAATTY 3 cut(s) 587, 750, 878
XmiI GTMKAC 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 2 cut(s) 774, 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.