AT1G47970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006316
Physical Location & Seq
Forward (+)
17686990 .. 17688859
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47970.1

Sequence Viewer

Length: 597 bp
ATGACTGGTGTTAATGATGATGATGATAAGAACTTCAAAGAAGAACCAGAGATTCAAGTTTTAAGCGACGACGATAGTGATGAAGAACAAGTTAAAGACGTAGGTGAAGAAGTTAGCGACGAAGACGATGATGATGGAAGTGAAGGAGATGATGATGATGATGAGGAAGAAGAAGAAGATGACGATGACGATGATGATGTTCAGGTTTTGCAGTCTTTAGGTGGTCCTCCTGTACAATCAGCGGAAGATGAAGATGAAGAAGGTGATGAAGATGGGAACGGTGATGACGATGATGATGATGGAGATGATGATGATGACGACGATGATGATGAGGATGAGGATGTTGAAGATGAGGGGGATCTTGGGACAGAGTACTTAGTGAGGCCAGTTGGTAGAGCTGAAGATGAGGAGGATGCAAGTGATTTTGAGCCGGAAGAGAATGGTGTGGAAGAGGATATAGACGAAGGAGAAGACGATGAGAATGATAACTCGGGTGGTGCTGGGAAGTCAGAGGCTCCGCCGAAGAGGAAGAGAGCTCCTGAAGAAGATGAAGAGGATAGTGGTGATGAAGATGATGACAGACCTCCAAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.85

Weight (kDa)

4.05

Isoelectric Point (pI)

68.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 242, 518
AclWI GGATC 1 cut(s) 366
AcuI CTGAAG 2 cut(s) 420, 561
AfaI GTAC 2 cut(s) 234, 374
AgsI TTSAA 3 cut(s) 37, 56, 347
AluBI AGCT 2 cut(s) 398, 536
AluI AGCT 2 cut(s) 398, 536
Alw21I GWGCWC 1 cut(s) 538
AlwI GGATC 1 cut(s) 366
Ama87I CYCGRG 1 cut(s) 490
AoxI GGCC 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 4 cut(s) 116, 275, 293, 575
AvaI CYCGRG 1 cut(s) 490
AvaII GGWCC 1 cut(s) 224
BanII GRGCYC 1 cut(s) 538
BbsI GAAGAC 2 cut(s) 129, 477
Bbv12I GWGCWC 1 cut(s) 538
BccI CCATC 3 cut(s) 128, 266, 293
BmcAI AGTACT 1 cut(s) 374
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 490
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 516
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 2 cut(s) 129, 477
Bse1I ACTGG 2 cut(s) 10, 386
BseGI GGATG 3 cut(s) 340, 346, 418
BseNI ACTGG 2 cut(s) 10, 386
BseRI GAGGAG 1 cut(s) 422
BseYI CCCAGC 1 cut(s) 500
BshFI GGCC 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 490
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 379
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 1 cut(s) 385
BsoBI CYCGRG 1 cut(s) 490
Bsp1286I GDGCHC 1 cut(s) 538
Bsp1407I TGTACA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 2 cut(s) 242, 518
BspANI GGCC 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 516
BspPI GGATC 1 cut(s) 366
BsrGI TGTACA 1 cut(s) 232
BsrI ACTGG 2 cut(s) 10, 386
BssMI GATC 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 5 cut(s) 429, 444, 518, 524, 546
BstAUI TGTACA 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 376
BstF5I GGATG 3 cut(s) 340, 346, 418
BstKTI GATC 1 cut(s) 361
BstMBI GATC 1 cut(s) 358
BstV2I GAAGAC 2 cut(s) 129, 477
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 385
BtsCI GGATG 3 cut(s) 340, 346, 418
Cfr13I GGNCC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 233, 373
CviJI RGCY 5 cut(s) 385, 398, 430, 515, 536
CviKI_1 RGCY 5 cut(s) 385, 398, 430, 515, 536
CviQI GTAC 2 cut(s) 233, 373
DdeI CTNAG 1 cut(s) 376
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eam1104I CTCTTC 5 cut(s) 429, 444, 518, 524, 546
EarI CTCTTC 5 cut(s) 429, 444, 518, 524, 546
EciI GGCGGA 1 cut(s) 507
Ecl136II GAGCTC 1 cut(s) 536
Eco24I GRGCYC 1 cut(s) 538
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 420, 561
Eco88I CYCGRG 1 cut(s) 490
EcoICRI GAGCTC 1 cut(s) 536
EcoT38I GRGCYC 1 cut(s) 538
FaiI YATR 1 cut(s) 458
FaqI GGGAC 1 cut(s) 379
FokI GGATG 3 cut(s) 347, 353, 425
FriOI GRGCYC 1 cut(s) 538
GsaI CCCAGC 1 cut(s) 504
HaeIII GGCC 1 cut(s) 385
HapII CCGG 1 cut(s) 431
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 431
HphI GGTGA 4 cut(s) 116, 275, 293, 575
Hpy188I TCNGA 1 cut(s) 511
Hpy188III TCNNGA 1 cut(s) 539
Hpy99I CGWCG 4 cut(s) 71, 74, 122, 323
HpyAV CCTTC 3 cut(s) 137, 254, 458
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 211, 416
HpyF3I CTNAG 1 cut(s) 376
HpySE526I ACGT 1 cut(s) 99
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 2 cut(s) 520, 541
LpnPI CCDG 7 cut(s) 60, 188, 243, 399, 444, 486, 552
LweI GCATC 1 cut(s) 403
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 538
MseI TTAA 3 cut(s) 12, 62, 93
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 431
NdeII GATC 1 cut(s) 358
NlaIV GGNNCC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PfeI GAWTC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 538
PspFI CCCAGC 1 cut(s) 500
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 2 cut(s) 234, 374
RsaNI GTAC 2 cut(s) 233, 373
SacI GAGCTC 1 cut(s) 538
SaqAI TTAA 3 cut(s) 12, 62, 93
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 1 cut(s) 224
ScaI AGTACT 1 cut(s) 374
SduI GDGCHC 1 cut(s) 538
SetI ASST 9 cut(s) 102, 106, 207, 223, 265, 400, 538, 586, 596
SfaNI GCATC 1 cut(s) 403
SinI GGWCC 1 cut(s) 224
SsiI CCGC 2 cut(s) 242, 518
SstI GAGCTC 1 cut(s) 538
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 102
TatI WGTACW 2 cut(s) 232, 372
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 3 cut(s) 12, 62, 93
Tru9I TTAA 3 cut(s) 12, 62, 93
TspDTI ATGAA 6 cut(s) 96, 264, 270, 282, 564, 582
VpaK11BI GGWCC 1 cut(s) 224
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.