Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006316

Physical Location & Seq

Genomic Coordinates Forward (+)

13643078 .. 13645019

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027658

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGTAACGCCGGCGAAGCGAGGGTGCGAGCCAGCAGCGAACCAAGCGCACGACCCCGGCCGGGAACTAAACGCGCGACCTTGACGGCTAACCAAGCGCGAGACCCAGGCGGAGAAGTGAAGCCTTTGACTGTCGAGGAATTGGAGCAGTACAAGTCCGTTTTAGAGTCCTCCGACTCTGACTCTGACTCCGACTCAATAGACTATGAGGACGACGAAGAAGACGAGGAAGACGCTGAAGGAGGCGATGACGACGACGACGGCGGCGAGGGAGAGGATGAGTTGAAAATTTTCAGATCTGGTACTATTTGTTGTTTTTCCTCCGGTGGCCCTCCGGTTCAGTCAATAGACGATGAGGACGACAAAGAAGATGAGGAAGATGCTGAAGGAAGGGATGACGACGATGACGGCGAGGGAGAGGATGAGAACTATTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.8

Weight (kDa)

4.05

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47970
fragaria_vesca	FvH4_4g20460
malus_domestica	MD13G1149500.v1.1 MD16G1149800.v1.1
prunus_persica	Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1
pyrus_communis	pycom13g12870 pycom16g12830
rosa_chinensis	RchiOBHm_Chr4g0425941
rosa_laevigata	RLG00000004628 RLG00000007330 RLG00000015867 RLG00000027658
rosa_roxburghii	Rroxscaffold_5G00367950
rosa_rugosa	Rorug04G0207200 Rorug04G0207300.1 Rorug04G0207400 Rorug04G0207500
rosa_samantha	Rh3DG073600 Rh4AG264400 Rh4BG270300 Rh4CG282900 Rh4DG266800 Rh5BG314700 Rh6DG338900
rosa_wichuraiana	Rw4G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	75, 77, 100
AciI	CCGC	2 cut(s)	111, 264
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	288
AcuI	CTGAAG	2 cut(s)	258, 405
AfaI	GTAC	2 cut(s)	152, 304
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	106
Alw26I	GTCTC	1 cut(s)	96
AoxI	GGCC	2 cut(s)	59, 328
ApeKI	GCWGC	1 cut(s)	36
ApoI	RAATTY	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	3 cut(s)	50, 77, 100
AspS9I	GGNCC	1 cut(s)	329
AsuC2I	CCSGG	2 cut(s)	58, 63
BbsI	GAAGAC	2 cut(s)	228, 237
BbvI	GCAGC	1 cut(s)	48
BceAI	ACGGC	3 cut(s)	102, 277, 424
BciT130I	CCWGG	1 cut(s)	108
BcnI	CCSGG	2 cut(s)	58, 63
BcoDI	GTCTC	1 cut(s)	96
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	2 cut(s)	37, 265
BlsI	GCNGC	2 cut(s)	38, 266
Bme1390I	CCNGG	3 cut(s)	58, 63, 108
BmgT120I	GGNCC	1 cut(s)	329
BmrFI	CCNGG	3 cut(s)	58, 63, 108
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	2 cut(s)	228, 237
BpuMI	CCSGG	2 cut(s)	58, 63
BsaI	GGTCTC	1 cut(s)	96
BsaJI	CCNNGG	2 cut(s)	56, 106
BsaWI	WCCGGW	2 cut(s)	323, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	56, 106
BseGI	GGATG	3 cut(s)	283, 400, 427
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	48
Bsh1236I	CGCG	3 cut(s)	75, 77, 100
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	61, 330
BsiEI	CGRYCG	1 cut(s)	62
BsiSI	CCGG	5 cut(s)	12, 58, 62, 324, 335
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	61, 330
Bso31I	GGTCTC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	296
BspACI	CCGC	2 cut(s)	111, 264
BspANI	GGCC	2 cut(s)	61, 330
BspFNI	CGCG	3 cut(s)	75, 77, 100
BspTNI	GGTCTC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	56, 106
BssMI	GATC	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	133
BstC8I	GCNNGC	3 cut(s)	13, 30, 34
BstF5I	GGATG	3 cut(s)	283, 400, 427
BstFNI	CGCG	3 cut(s)	75, 77, 100
BstHHI	GCGC	3 cut(s)	50, 77, 100
BstKTI	GATC	1 cut(s)	299
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	296
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 45, 95
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	3 cut(s)	56, 61, 106
BstUI	CGCG	3 cut(s)	75, 77, 100
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	2 cut(s)	228, 237
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BstZI	CGGCCG	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	61, 330
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	283, 400, 427
Cac8I	GCNNGC	3 cut(s)	13, 30, 34
CfoI	GCGC	3 cut(s)	50, 77, 100
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	329
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	151, 303
CviJI	RGCY	5 cut(s)	32, 61, 89, 124, 330
CviKI_1	RGCY	5 cut(s)	32, 61, 89, 124, 330
CviQI	GTAC	2 cut(s)	151, 303
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	59
EagI	CGGCCG	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	126
EclXI	CGGCCG	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	96
Eco52I	CGGCCG	1 cut(s)	59
Eco57I	CTGAAG	2 cut(s)	258, 405
EcoRII	CCWGG	1 cut(s)	106
FaiI	YATR	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	37, 265
FokI	GGATG	3 cut(s)	290, 407, 434
Fsp4HI	GCNGC	2 cut(s)	37, 265
GlaI	GCGC	3 cut(s)	49, 76, 99
GluI	GCNGC	2 cut(s)	37, 265
HaeIII	GGCC	2 cut(s)	61, 330
HapII	CCGG	5 cut(s)	12, 58, 62, 324, 335
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	3 cut(s)	50, 77, 100
Hin6I	GCGC	3 cut(s)	48, 75, 98
HinP1I	GCGC	3 cut(s)	48, 75, 98
HinfI	GANTC	5 cut(s)	167, 176, 182, 188, 194
HpaII	CCGG	5 cut(s)	12, 58, 62, 324, 335
Hpy188I	TCNGA	5 cut(s)	175, 181, 187, 193, 296
Hpy99I	CGWCG	5 cut(s)	218, 257, 260, 263, 404
HpyAV	CCTTC	3 cut(s)	233, 380, 384
HpyCH4III	ACNGT	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 45, 95
HspAI	GCGC	3 cut(s)	48, 75, 98
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	296
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	9 cut(s)	25, 46, 71, 75, 93, 120, 285, 337, 348
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	298
MboI	GATC	1 cut(s)	296
MboII	GAAGA	5 cut(s)	230, 233, 242, 380, 389
MflI	RGATCY	1 cut(s)	296
MluCI	AATT	2 cut(s)	140, 288
MlyI	GAGTC	5 cut(s)	170, 176, 176, 182, 188
MmeI	TCCRAC	2 cut(s)	198, 216
MreI	CGCCGGCG	1 cut(s)	11
MroNI	GCCGGC	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	290
MspI	CCGG	5 cut(s)	12, 58, 62, 324, 335
MspR9I	CCNGG	3 cut(s)	58, 63, 108
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	3 cut(s)	75, 77, 100
MwoI	GCNNNNNNNGC	3 cut(s)	17, 45, 95
NaeI	GCCGGC	1 cut(s)	13
NciI	CCSGG	2 cut(s)	58, 63
NdeII	GATC	1 cut(s)	296
NgoMIV	GCCGGC	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	4 cut(s)	222, 264, 357, 408
PdiI	GCCGGC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	38, 266
PleI	GAGTC	5 cut(s)	170, 175, 176, 182, 188
PpsI	GAGTC	5 cut(s)	170, 175, 176, 182, 188
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	2 cut(s)	152, 304
RsaNI	GTAC	2 cut(s)	151, 303
SatI	GCNGC	2 cut(s)	37, 265
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	5 cut(s)	170, 176, 176, 182, 188
ScrFI	CCNGG	3 cut(s)	58, 63, 108
SetI	ASST	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	370
SgrAI	CRCCGGYG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	140, 288
SsiI	CCGC	2 cut(s)	111, 264
StyD4I	CCNGG	3 cut(s)	56, 61, 106
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	140, 288
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	148
XapI	RAATTY	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.