Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006316

Physical Location & Seq

Genomic Coordinates Reverse (-)

9070622 .. 9072254

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAAGGTTATGGAGGAAGTTGTGGAGGAAAACGAAGTTAAGCCTTTGACCGCCGAGCAATTGGAGCAGTACGAGTCGCAGTCAGAGTCTGAGTCCGAGTCCGATGACAGCGTAGACGAAGAGGAGGAGGACGCTGACGAGGATGAGGACGACGACGACGAAGACGACGCGGATGACGACGAAGAGGACGACGATGACGAAGAAGAGGACGACGACGACGATGTTCAGGAGGTCGTACAGTCGTCTGGTGGCCCTCCGATTCACTCGGTAGACGAGGAAGACGATGAGGACGAGGACAACGAAGACGGTGAAGGCGGTGGCGACGATGACGATGGCGAGGGAGACGACGACGACGACGATGATGAGGGCGAGCCTGATGAAGAGGATGAGCTAGGAACTGAGTACCTCGTCCGCCCGGTAGGTCGTGCTGAGGATGAGGAAGATGCGAGTGATTTTGAGCCTGAAGAGAATGGAGATGATGAAGATGTTGAAGATGAAGACGAGGGCGATGACGCTGGTGGGAAGGTGGAGGCTCCCCCAAAGAGAAAGAGATCGGACAAAGATGACTCAGACGACGACGACGATGATGGAGGAGAGGATGACGAGAGACCCTCCAAACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.06

Weight (kDa)

4.05

Isoelectric Point (pI)

73.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47970
fragaria_vesca	FvH4_4g20460
malus_domestica	MD13G1149500.v1.1 MD16G1149800.v1.1
prunus_persica	Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1
pyrus_communis	pycom13g12870 pycom16g12830
rosa_chinensis	RchiOBHm_Chr4g0425941
rosa_laevigata	RLG00000004628 RLG00000007330 RLG00000015867 RLG00000027658
rosa_roxburghii	Rroxscaffold_5G00367950
rosa_rugosa	Rorug04G0207200 Rorug04G0207300.1 Rorug04G0207400 Rorug04G0207500
rosa_samantha	Rh3DG073600 Rh4AG264400 Rh4BG270300 Rh4CG282900 Rh4DG266800 Rh5BG314700 Rh6DG338900
rosa_wichuraiana	Rw4G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	114, 270
AccII	CGCG	1 cut(s)	170
AciI	CCGC	4 cut(s)	51, 170, 315, 412
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	3 cut(s)	71, 237, 404
AgsI	TTSAA	1 cut(s)	491
AluBI	AGCT	1 cut(s)	391
AluI	AGCT	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	336, 601
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	320
BbsI	GAAGAC	4 cut(s)	168, 285, 309, 504
BbvCI	CCTCAGC	1 cut(s)	429
BccI	CCATC	2 cut(s)	326, 581
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	336, 601
BfaI	CTAG	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	4 cut(s)	168, 285, 309, 504
BplI	GAGNNNNNCTC	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	601
BseGI	GGATG	5 cut(s)	148, 178, 391, 439, 604
BseMII	CTCAG	4 cut(s)	81, 390, 420, 582
BseRI	GAGGAG	3 cut(s)	137, 140, 606
Bsh1236I	CGCG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	416
BsmAI	GTCTC	2 cut(s)	336, 601
BsmBI	CGTCTC	1 cut(s)	336
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	601
Bsp143I	GATC	1 cut(s)	551
BspACI	CCGC	4 cut(s)	51, 170, 315, 412
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	4 cut(s)	82, 391, 421, 581
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	534
BspTNI	GGTCTC	1 cut(s)	601
BssMI	GATC	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	240, 308
Bst6I	CTCTTC	5 cut(s)	114, 177, 198, 375, 459
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	4 cut(s)	90, 399, 429, 568
BstF5I	GGATG	5 cut(s)	148, 178, 391, 439, 604
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	1 cut(s)	554
BstMAI	GTCTC	2 cut(s)	336, 601
BstMBI	GATC	1 cut(s)	551
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	414
BstUI	CGCG	1 cut(s)	170
BstV2I	GAAGAC	4 cut(s)	168, 285, 309, 504
BsuRI	GGCC	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	522
BtsCI	GGATG	5 cut(s)	148, 178, 391, 439, 604
Cac8I	GCNNGC	1 cut(s)	371
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	3 cut(s)	140, 176, 521
Csp6I	GTAC	3 cut(s)	70, 236, 403
CviJI	RGCY	6 cut(s)	43, 252, 373, 391, 460, 533
CviKI_1	RGCY	6 cut(s)	43, 252, 373, 391, 460, 533
CviQI	GTAC	3 cut(s)	70, 236, 403
DdeI	CTNAG	4 cut(s)	90, 399, 429, 568
DpnI	GATC	1 cut(s)	553
DpnII	GATC	1 cut(s)	551
Eam1104I	CTCTTC	5 cut(s)	114, 177, 198, 375, 459
EarI	CTCTTC	5 cut(s)	114, 177, 198, 375, 459
EciI	GGCGGA	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	336
FaiI	YATR	1 cut(s)	11
FblI	GTMKAC	2 cut(s)	114, 270
FokI	GGATG	5 cut(s)	155, 185, 398, 446, 611
FspBI	CTAG	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	416
HgaI	GACGC	3 cut(s)	140, 176, 521
HinfI	GANTC	6 cut(s)	74, 86, 92, 98, 259, 566
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	115, 271
Hpy188I	TCNGA	7 cut(s)	85, 91, 97, 103, 258, 556, 571
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	2 cut(s)	115, 271
HpyAV	CCTTC	2 cut(s)	305, 517
HpyCH4III	ACNGT	2 cut(s)	240, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	4 cut(s)	90, 399, 429, 568
Kzo9I	GATC	1 cut(s)	551
LmnI	GCTCC	2 cut(s)	64, 538
LpnPI	CCDG	6 cut(s)	212, 231, 387, 429, 474, 501
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	392
MalI	GATC	1 cut(s)	553
MboI	GATC	1 cut(s)	551
MfeI	CAATTG	1 cut(s)	59
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	5 cut(s)	83, 95, 101, 107, 560
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	59
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	416
NdeII	GATC	1 cut(s)	551
NlaIV	GGNNCC	1 cut(s)	534
NmeAIII	GCCGAG	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	259
PleI	GAGTC	5 cut(s)	82, 94, 100, 106, 560
PpsI	GAGTC	5 cut(s)	82, 94, 100, 106, 560
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	89
RsaI	GTAC	3 cut(s)	71, 237, 404
RsaNI	GTAC	3 cut(s)	70, 236, 403
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	551
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	5 cut(s)	83, 95, 101, 107, 560
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	6 cut(s)	9, 234, 393, 408, 424, 528
SfaNI	GCATC	1 cut(s)	433
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	4 cut(s)	51, 170, 315, 412
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	240, 308
TasI	AATT	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TspDTI	ATGAA	4 cut(s)	17, 393, 495, 510
XmiI	GTMKAC	2 cut(s)	114, 270
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.