Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006316

Physical Location & Seq

Genomic Coordinates Reverse (-)

11739206 .. 11741810

Gene Structure 2605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1149500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAGGCTATGGAGGAAGTTGTGGAGGAAAACGAGGTTAAGCCTTTGACCGCCGAGCAATTGGAGCTCTACGAGTCGCAGTCCCAGTCTGAGTCCGAGTCCGAGTCCGACGACAGCGTAGACGAAGAGGAGGAGGACGCCGACGAGGATGAGGACGACGACGACGACGACGATGCGGATGACGACGAAGAGGACGACGATGACGAAGAAGAGGACGACGACGACGATGTTCAGGAGGTCGTACAGTCGTCTGGTGGCCCTCCGATTCACTCGGTAGACGACGAAGACGATGAGGACGAGGACGACGAAGGCGGTGAAGGCGGTGACGACGATGACGATGGCGAGGGAGATGACGACGACGACGATGATGAGGGCGAGCCTGATGAAGAGGATGAGCTAGGAACTGAGTACCTCGTCCGCCCGGTAGGTCGTGCTGAGGATGAGGAAGATGCGAGTGATTTTGAGCCTGAAGAGAATGGAGACGATGAAGATGTTGAAGATGGAGACGAGGGCGATGATGCTGGTGGGAAGGTGGAGGCTCCCCCAAAGAGAAAGAGATCGGACAAAGATGACTCAGACGATGACGACGATGATGGAGGAGAGGATGACGAGAGACCCTCCAAACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.13

Weight (kDa)

4.05

Isoelectric Point (pI)

71.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47970
fragaria_vesca	FvH4_4g20460
malus_domestica	MD13G1149500.v1.1 MD16G1149800.v1.1
prunus_persica	Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1
pyrus_communis	pycom13g12870 pycom16g12830
rosa_chinensis	RchiOBHm_Chr4g0425941
rosa_laevigata	RLG00000004628 RLG00000007330 RLG00000015867 RLG00000027658
rosa_roxburghii	Rroxscaffold_5G00367950
rosa_rugosa	Rorug04G0207200 Rorug04G0207300.1 Rorug04G0207400 Rorug04G0207500
rosa_samantha	Rh3DG073600 Rh4AG264400 Rh4BG270300 Rh4CG282900 Rh4DG266800 Rh5BG314700 Rh6DG338900
rosa_wichuraiana	Rw4G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	120, 276
AciI	CCGC	5 cut(s)	51, 176, 312, 321, 418
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	243, 410
AgsI	TTSAA	1 cut(s)	497
AluBI	AGCT	2 cut(s)	67, 397
AluI	AGCT	2 cut(s)	67, 397
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	3 cut(s)	474, 498, 607
AoxI	GGCC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	2 cut(s)	326, 335
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	435
BccI	CCATC	3 cut(s)	332, 494, 587
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	3 cut(s)	474, 498, 607
BfaI	CTAG	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	1 cut(s)	422
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	3 cut(s)	163, 439, 508
BmuI	ACTGGG	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	291
BplI	GAGNNNNNCTC	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	607
Bse1I	ACTGG	1 cut(s)	85
BseGI	GGATG	5 cut(s)	154, 184, 397, 445, 610
BseMII	CTCAG	4 cut(s)	81, 396, 426, 588
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	3 cut(s)	143, 146, 612
BshFI	GGCC	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	67
BsmAI	GTCTC	3 cut(s)	474, 498, 607
BsmBI	CGTCTC	2 cut(s)	474, 498
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	607
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	557
BspACI	CCGC	5 cut(s)	51, 176, 312, 321, 418
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	4 cut(s)	82, 397, 427, 587
BspLI	GGNNCC	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	557
BssNI	GRCGYC	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	5 cut(s)	120, 183, 204, 381, 465
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	4 cut(s)	90, 405, 435, 574
BstF5I	GGATG	5 cut(s)	154, 184, 397, 445, 610
BstKTI	GATC	1 cut(s)	560
BstMAI	GTCTC	3 cut(s)	474, 498, 607
BstMBI	GATC	1 cut(s)	557
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 318
BstSCI	CCNGG	1 cut(s)	420
BstV2I	GAAGAC	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	528
BtsCI	GGATG	5 cut(s)	154, 184, 397, 445, 610
Cac8I	GCNNGC	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	242, 409
CviJI	RGCY	8 cut(s)	8, 43, 67, 258, 379, 397, 466, 539
CviKI_1	RGCY	8 cut(s)	8, 43, 67, 258, 379, 397, 466, 539
CviQI	GTAC	2 cut(s)	242, 409
DdeI	CTNAG	4 cut(s)	90, 405, 435, 574
DpnI	GATC	1 cut(s)	559
DpnII	GATC	1 cut(s)	557
Eam1104I	CTCTTC	5 cut(s)	120, 183, 204, 381, 465
EarI	CTCTTC	5 cut(s)	120, 183, 204, 381, 465
EciI	GGCGGA	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	607
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	489
EcoICRI	GAGCTC	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	69
Esp3I	CGTCTC	2 cut(s)	474, 498
FaiI	YATR	1 cut(s)	11
FaqI	GGGAC	1 cut(s)	67
FblI	GTMKAC	2 cut(s)	120, 276
FokI	GGATG	5 cut(s)	161, 191, 404, 452, 617
FriOI	GRGCYC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	138
HinfI	GANTC	6 cut(s)	74, 92, 98, 104, 265, 572
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	2 cut(s)	326, 335
Hpy166II	GTNNAC	2 cut(s)	121, 277
Hpy188I	TCNGA	7 cut(s)	91, 97, 103, 109, 264, 562, 577
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	2 cut(s)	121, 277
HpyAV	CCTTC	3 cut(s)	302, 311, 523
HpyCH4III	ACNGT	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 318
HpyF3I	CTNAG	4 cut(s)	90, 405, 435, 574
Hsp92I	GRCGYC	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	557
LmnI	GCTCC	2 cut(s)	64, 544
LpnPI	CCDG	7 cut(s)	98, 218, 237, 393, 435, 480, 507
LweI	GCATC	3 cut(s)	163, 439, 508
MaeI	CTAG	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	1 cut(s)	559
MboI	GATC	1 cut(s)	557
MfeI	CAATTG	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	5 cut(s)	83, 101, 107, 113, 566
MmeI	TCCRAC	1 cut(s)	132
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	64, 318
NciI	CCSGG	1 cut(s)	422
NdeII	GATC	1 cut(s)	557
NlaIV	GGNNCC	1 cut(s)	540
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	265
PleI	GAGTC	5 cut(s)	82, 100, 106, 112, 566
PpsI	GAGTC	5 cut(s)	82, 100, 106, 112, 566
Psp124BI	GAGCTC	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	2 cut(s)	243, 410
RsaNI	GTAC	2 cut(s)	242, 409
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	557
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	5 cut(s)	83, 101, 107, 113, 566
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	7 cut(s)	39, 69, 240, 399, 414, 430, 534
SfaNI	GCATC	3 cut(s)	163, 439, 508
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	5 cut(s)	51, 176, 312, 321, 418
SspMI	CTAG	1 cut(s)	398
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	246
TasI	AATT	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	17, 399, 501
XmiI	GTMKAC	2 cut(s)	120, 276
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.