Rorug04G0207200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006316
Physical Location & Seq
Reverse (-)
36070106 .. 36074297
4192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0207200.1

Sequence Viewer

Length: 510 bp
ATGGCAAACACTTTGAGATTGTACTTGACCTGCATACGCAACACTCTAGATGCAGCAATGTGCCTGCAGAATTTTCCTTGTCAAGAAGTTGAAAGGCATAACAAGCCAGAAGTTGAGTTAAAGACCAGCCCAGAACTTCTGCTAAATCCTGTTTTGATATGTCGAAATGAGGCTGAAAAATGCTTGATTGAGACATCTATTAATTCCCTTCGTATAAGCCTCAAGGTAAAGCAGGCAGATGAACTTGAAAACATACTAACTAAAAAGTTTCTTAGATTTTTGTCAATGAGGGCAGAAGCATTTCAGGTATTGAGAAGAAAGCCCGTACAGGGTTATGACATTAGCTTTCTTATAACAAATTATCACTGTGAAGAGATGCAGAAGCACAAGCTCATTGATTTTATTATACAGTTCATGGAGGATATTGATAAGGAGATTAGTGAGTTAAAGATGTCAGTGAACACACGAGGCAGACTGGTGGCTACGGAGTTTCTTAAACAATTCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.84

Weight (kDa)

7.59

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARPC4 PF05856 1 - 167 5.7e-82 ARP2/3 complex 20 kDa subunit (ARPC4)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 38
AcsI RAATTY 1 cut(s) 70
AfaI GTAC 2 cut(s) 23, 327
AfiI CCNNNNNNNGG 1 cut(s) 329
AgsI TTSAA 2 cut(s) 92, 248
AluBI AGCT 2 cut(s) 345, 391
AluI AGCT 2 cut(s) 345, 391
Alw26I GTCTC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 70
AseI ATTAAT 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 300
BauI CACGAG 1 cut(s) 465
BbvI GCAGC 1 cut(s) 65
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 65
BfuAI ACCTGC 1 cut(s) 38
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmsI GCATC 2 cut(s) 40, 366
BpuEI CTTGAG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 480
Bse3DI GCAATG 1 cut(s) 63
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 480
BseXI GCAGC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 185
BspMAI CTGCAG 1 cut(s) 69
BspMI ACCTGC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 480
BssSI CACGAG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 368, 411
Bst6I CTCTTC 1 cut(s) 366
BstC8I GCNNGC 2 cut(s) 65, 234
BstDEI CTNAG 1 cut(s) 272
BstMAI GTCTC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 65
BtsIMutI CAGTG 2 cut(s) 364, 462
BveI ACCTGC 1 cut(s) 38
Cac8I GCNNGC 2 cut(s) 65, 234
Csp6I GTAC 2 cut(s) 22, 326
CviAII CATG 1 cut(s) 415
CviJI RGCY 8 cut(s) 106, 129, 173, 219, 322, 345, 391, 482
CviKI_1 RGCY 8 cut(s) 106, 129, 173, 219, 322, 345, 391, 482
CviQI GTAC 2 cut(s) 22, 326
DdeI CTNAG 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 366
EarI CTCTTC 1 cut(s) 366
FaeI CATG 1 cut(s) 418
FaiI YATR 9 cut(s) 35, 99, 160, 215, 254, 336, 353, 407, 416
FatI CATG 1 cut(s) 414
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 54
Hin1II CATG 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 460
Hpy188III TCNNGA 2 cut(s) 47, 83
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 2 cut(s) 368, 411
HpyCH4V TGCA 4 cut(s) 33, 53, 67, 379
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 1 cut(s) 418
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 2 cut(s) 40, 366
MaeI CTAG 1 cut(s) 47
MboII GAAGA 2 cut(s) 327, 383
MluCI AATT 4 cut(s) 70, 202, 358, 500
MnlI CCTC 5 cut(s) 163, 230, 282, 412, 461
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 4 cut(s) 119, 201, 446, 495
MwoI GCNNNNNNNGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 300
PkrI GCNGC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 201
PsiI TTATAA 1 cut(s) 353
PstI CTGCAG 1 cut(s) 69
RsaI GTAC 2 cut(s) 23, 327
RsaNI GTAC 2 cut(s) 22, 326
SaqAI TTAA 4 cut(s) 119, 201, 446, 495
SatI GCNGC 1 cut(s) 54
SetI ASST 5 cut(s) 32, 228, 309, 347, 393
SfaNI GCATC 2 cut(s) 40, 366
SfcI CTRYAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 4 cut(s) 70, 202, 358, 500
SspMI CTAG 1 cut(s) 47
TaaI ACNGT 2 cut(s) 368, 411
TaqI TCGA 1 cut(s) 163
TasI AATT 4 cut(s) 70, 202, 358, 500
TatI WGTACW 1 cut(s) 21
Tru1I TTAA 4 cut(s) 119, 201, 446, 495
Tru9I TTAA 4 cut(s) 119, 201, 446, 495
TscAI CASTG 2 cut(s) 371, 462
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 255, 403, 493
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 2 cut(s) 371, 462
VspI ATTAAT 1 cut(s) 201
XapI RAATTY 1 cut(s) 70
XbaI TCTAGA 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.