Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006316

Physical Location & Seq

Genomic Coordinates Forward (+)

60944949 .. 60946008

Gene Structure 1060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004628

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATCTAAATCACCGAACCGGCGAAGCAAGGGCTCGAGCCAGCAACGAACCAAGCGCACGACTCCGGCGGCGAACTAAGCGCGCAACCTTGACGGCTAACCAAGCGCGAGAACCAGGCGGAGAAGTGAAGCCTTTGACTGCTGAGGAATTGGAGCAGTATAAGTCTGTTTCAGAGTCCTCCGACTCTGACTCCGACGGCAACCTCGAAAACGAGGAAGAGGTTGGCAATGAAGATGAGGATGACGACGACGACGACGATGAGGACGATGAGGATGAAGATGACGATGACGATGTCCATGAGGTCGTACAGTCCTCCGGTGGCCCTCCGGTTCAGTCAATAGACGATGAGGACGACGAAGAAGACGAGGAAGACGCTAAAGGAGGCGATGACGACGACGACGGCGGCGAGGGCGAGGTTGAGGTAATTAGCCGAATCTTTTCATTTATTTTCCTTATTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.03

Weight (kDa)

4.05

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47970
fragaria_vesca	FvH4_4g20460
malus_domestica	MD13G1149500.v1.1 MD16G1149800.v1.1
prunus_persica	Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1
pyrus_communis	pycom13g12870 pycom16g12830
rosa_chinensis	RchiOBHm_Chr4g0425941
rosa_laevigata	RLG00000004628 RLG00000007330 RLG00000015867 RLG00000027658
rosa_roxburghii	Rroxscaffold_5G00367950
rosa_rugosa	Rorug04G0207200 Rorug04G0207300.1 Rorug04G0207400 Rorug04G0207500
rosa_samantha	Rh3DG073600 Rh4AG264400 Rh4BG270300 Rh4CG282900 Rh4DG266800 Rh5BG314700 Rh6DG338900
rosa_wichuraiana	Rw4G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	84, 109
AciI	CCGC	3 cut(s)	70, 120, 405
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	115
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	1 cut(s)	322
Asp700I	GAANNNNTTC	1 cut(s)	439
AspLEI	GCGC	4 cut(s)	59, 84, 86, 109
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	5
AvaI	CYCGRG	1 cut(s)	36
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	2 cut(s)	369, 378
BbvCI	CCTCAGC	1 cut(s)	144
BceAI	ACGGC	3 cut(s)	111, 214, 418
BciT130I	CCWGG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	71, 406
BlsI	GCNGC	2 cut(s)	72, 407
Bme1390I	CCNGG	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	117
BpiI	GAAGAC	2 cut(s)	369, 378
Bpu10I	CCTNAGC	1 cut(s)	144
BsaBI	GATNNNNATC	1 cut(s)	9
BsaWI	WCCGGW	2 cut(s)	317, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bse118I	RCCGGY	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	235
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	117
BseGI	GGATG	2 cut(s)	247, 280
BseJI	GATNNNNATC	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	135
BsePI	GCGCGC	1 cut(s)	82
Bsh1236I	CGCG	2 cut(s)	84, 109
BshFI	GGCC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	4 cut(s)	21, 67, 318, 329
BsnI	GGCC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	3 cut(s)	70, 120, 405
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	2 cut(s)	84, 109
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssHII	GCGCGC	1 cut(s)	82
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	43, 84
BstDEI	CTNAG	2 cut(s)	78, 144
BstF5I	GGATG	2 cut(s)	247, 280
BstFNI	CGCG	2 cut(s)	84, 109
BstHHI	GCGC	4 cut(s)	59, 84, 86, 109
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 104, 411
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstUI	CGCG	2 cut(s)	84, 109
BstV2I	GAAGAC	2 cut(s)	369, 378
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	324
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	247, 280
Cac8I	GCNNGC	2 cut(s)	43, 84
CfoI	GCGC	4 cut(s)	59, 84, 86, 109
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	1 cut(s)	299
CviJI	RGCY	6 cut(s)	35, 41, 98, 133, 324, 432
CviKI_1	RGCY	6 cut(s)	35, 41, 98, 133, 324, 432
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	78, 144
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	1 cut(s)	302
FaiI	YATR	2 cut(s)	162, 300
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	71, 406
FokI	GGATG	2 cut(s)	254, 287
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	2 cut(s)	71, 406
GlaI	GCGC	4 cut(s)	58, 83, 85, 108
GluI	GCNGC	2 cut(s)	71, 406
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	4 cut(s)	21, 67, 318, 329
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	4 cut(s)	59, 84, 86, 109
Hin1II	CATG	1 cut(s)	302
Hin6I	GCGC	4 cut(s)	57, 82, 84, 107
HinP1I	GCGC	4 cut(s)	57, 82, 84, 107
HinfI	GANTC	5 cut(s)	63, 176, 185, 191, 435
HpaII	CCGG	4 cut(s)	21, 67, 318, 329
HphI	GGTGA	1 cut(s)	5
Hpy188I	TCNGA	4 cut(s)	175, 184, 190, 196
Hpy99I	CGWCG	9 cut(s)	200, 251, 254, 257, 260, 359, 398, 401, 404
HpyCH4III	ACNGT	1 cut(s)	312
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 104, 411
HpyF3I	CTNAG	2 cut(s)	78, 144
Hsp92II	CATG	1 cut(s)	302
HspAI	GCGC	4 cut(s)	57, 82, 84, 107
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	34, 55, 80, 102, 129, 331, 342
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	6 cut(s)	230, 245, 290, 371, 374, 383
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	2 cut(s)	149, 426
MlyI	GAGTC	4 cut(s)	57, 179, 185, 185
MmeI	TCCRAC	2 cut(s)	207, 219
MroXI	GAANNNNTTC	1 cut(s)	439
MseI	TTAA	1 cut(s)	463
MspI	CCGG	4 cut(s)	21, 67, 318, 329
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	2 cut(s)	84, 109
MwoI	GCNNNNNNNGC	3 cut(s)	79, 104, 411
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	36
PauI	GCGCGC	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	7 cut(s)	204, 252, 255, 264, 351, 363, 405
PdmI	GAANNNNTTC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	435
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	72, 407
PleI	GAGTC	4 cut(s)	57, 179, 184, 185
PpsI	GAGTC	4 cut(s)	57, 179, 184, 185
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	323
PspXI	VCTCGAGB	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	293
PteI	GCGCGC	1 cut(s)	82
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	2 cut(s)	71, 406
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	4 cut(s)	57, 179, 185, 185
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	6 cut(s)	92, 207, 225, 306, 420, 426
Sfr274I	CTCGAG	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	2 cut(s)	149, 426
SsiI	CCGC	3 cut(s)	70, 120, 405
StyD4I	CCNGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	37, 207
TasI	AATT	2 cut(s)	149, 426
TauI	GCSGC	2 cut(s)	73, 408
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TspDTI	ATGAA	3 cut(s)	246, 291, 432
Tth111I	GACNNNGTC	1 cut(s)	293
XhoI	CTCGAG	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.