Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006316

Physical Location & Seq

Genomic Coordinates Reverse (-)

11806082 .. 11808644

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1149800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAGGCTATGGAGGAAGTTGTGGAGGAAAACGAAGTTAAGCCTTTGACTGCCGAGCAATTGGAGCTGTACGAGTCGCAGTCCGAATCTGAGTCCGAGTCCGACGACAGCGTAGGCGATGAGGAGGAGGACGCTGACGAGGATGAGGACGACGACGACGACGCGGATGACGACGAAGAGGACGACGATGACGACGAAGAGGACGACGACGACGATGTTCAGGAGGTCGTACAGTCGTCTGGTGGCGCTCCGGTTCACGCGGTGGACGACGAAGACGACGATGACGAGGACGAGGACGACGAAGGCGGTGACGACGACGACGATGGCGAGGGAGATGACGACGACGACGACGACGACGACGACGAGGAGCCTGAGGAAGAGGATGAGCTAGGAACTGAGTACCTCGTCCGCCCAGTAGGTCGCGCTGAGGATGAGGAAGATGCAAGCGATTTTGAGCCCGAAGAGAATGGAGTTGACGAAGATGAAGAGGAGGGCGATGATGCTGGTGGGAAGGTGGAGGCTCCCCCAAAGAGAAAGAGATCGGACAAAGATGACTCAGATGACGACGACGATGGTGATGGAGGAGAGGACGATGAGAGACCCTCCAAACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.62

Weight (kDa)

4.05

Isoelectric Point (pI)

73.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47970
fragaria_vesca	FvH4_4g20460
malus_domestica	MD13G1149500.v1.1 MD16G1149800.v1.1
prunus_persica	Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1
pyrus_communis	pycom13g12870 pycom16g12830
rosa_chinensis	RchiOBHm_Chr4g0425941
rosa_laevigata	RLG00000004628 RLG00000007330 RLG00000015867 RLG00000027658
rosa_roxburghii	Rroxscaffold_5G00367950
rosa_rugosa	Rorug04G0207200 Rorug04G0207300.1 Rorug04G0207400 Rorug04G0207500
rosa_samantha	Rh3DG073600 Rh4AG264400 Rh4BG270300 Rh4CG282900 Rh4DG266800 Rh5BG314700 Rh6DG338900
rosa_wichuraiana	Rw4G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	164, 260, 423
AciI	CCGC	4 cut(s)	164, 260, 306, 409
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	3 cut(s)	71, 231, 401
AluBI	AGCT	2 cut(s)	67, 388
AluI	AGCT	2 cut(s)	67, 388
Alw26I	GTCTC	1 cut(s)	592
AspLEI	GCGC	2 cut(s)	248, 425
AsuHPI	GGTGA	2 cut(s)	320, 587
AxyI	CCTNAGG	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	426
BccI	CCATC	3 cut(s)	317, 566, 572
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	1 cut(s)	389
BfoI	RGCGCY	1 cut(s)	249
BmiI	GGNNCC	2 cut(s)	369, 522
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	2 cut(s)	430, 490
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	279
BplI	GAGNNNNNCTC	1 cut(s)	587
Bpu10I	CCTNAGC	1 cut(s)	426
BsaI	GGTCTC	1 cut(s)	592
BsaWI	WCCGGW	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	413
Bse21I	CCTNAGG	1 cut(s)	372
BseGI	GGATG	4 cut(s)	148, 172, 388, 436
BseMII	CTCAG	5 cut(s)	81, 363, 387, 417, 570
BseNI	ACTGG	1 cut(s)	413
BseRI	GAGGAG	5 cut(s)	137, 140, 380, 503, 597
Bsh1236I	CGCG	3 cut(s)	164, 260, 423
BsiSI	CCGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	592
Bso31I	GGTCTC	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	1 cut(s)	539
BspACI	CCGC	4 cut(s)	164, 260, 306, 409
BspCNI	CTCAG	5 cut(s)	82, 364, 388, 418, 569
BspFNI	CGCG	3 cut(s)	164, 260, 423
BspLI	GGNNCC	2 cut(s)	369, 522
BspTNI	GGTCTC	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	413
BssMI	GATC	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	5 cut(s)	171, 192, 372, 456, 480
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	5 cut(s)	90, 372, 396, 426, 556
BstF5I	GGATG	4 cut(s)	148, 172, 388, 436
BstFNI	CGCG	3 cut(s)	164, 260, 423
BstH2I	RGCGCY	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	248, 425
BstKTI	GATC	1 cut(s)	542
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	1 cut(s)	539
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstUI	CGCG	3 cut(s)	164, 260, 423
BstV2I	GAAGAC	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	372
BtgZI	GCGATG	2 cut(s)	132, 510
BtsCI	GGATG	4 cut(s)	148, 172, 388, 436
Cac8I	GCNNGC	1 cut(s)	445
CfoI	GCGC	2 cut(s)	248, 425
CseI	GACGC	2 cut(s)	140, 170
Csp6I	GTAC	3 cut(s)	70, 230, 400
CviJI	RGCY	7 cut(s)	8, 43, 67, 370, 388, 457, 521
CviKI_1	RGCY	7 cut(s)	8, 43, 67, 370, 388, 457, 521
CviQI	GTAC	3 cut(s)	70, 230, 400
DdeI	CTNAG	5 cut(s)	90, 372, 396, 426, 556
DpnI	GATC	1 cut(s)	541
DpnII	GATC	1 cut(s)	539
DraIII	CACNNNGTG	1 cut(s)	262
Eam1104I	CTCTTC	5 cut(s)	171, 192, 372, 456, 480
EarI	CTCTTC	5 cut(s)	171, 192, 372, 456, 480
EciI	GGCGGA	1 cut(s)	398
Eco24I	GRGCYC	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	592
Eco81I	CCTNAGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	459
FaiI	YATR	1 cut(s)	11
FokI	GGATG	4 cut(s)	155, 179, 395, 443
FriOI	GRGCYC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	2 cut(s)	247, 424
HaeII	RGCGCY	1 cut(s)	249
HapII	CCGG	1 cut(s)	251
HgaI	GACGC	2 cut(s)	140, 170
HhaI	GCGC	2 cut(s)	248, 425
Hin6I	GCGC	2 cut(s)	246, 423
HinP1I	GCGC	2 cut(s)	246, 423
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	5 cut(s)	74, 86, 92, 98, 554
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	2 cut(s)	320, 587
Hpy166II	GTNNAC	3 cut(s)	256, 265, 475
Hpy188I	TCNGA	6 cut(s)	85, 91, 97, 103, 544, 559
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	3 cut(s)	256, 265, 475
HpyAV	CCTTC	2 cut(s)	296, 505
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4V	TGCA	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	5 cut(s)	90, 372, 396, 426, 556
HspAI	GCGC	2 cut(s)	246, 423
Kzo9I	GATC	1 cut(s)	539
LmnI	GCTCC	4 cut(s)	64, 253, 367, 526
LpnPI	CCDG	6 cut(s)	206, 225, 264, 384, 426, 489
LweI	GCATC	2 cut(s)	430, 490
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	1 cut(s)	541
MboI	GATC	1 cut(s)	539
MboII	GAAGA	8 cut(s)	188, 209, 284, 389, 449, 473, 491, 497
MfeI	CAATTG	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	4 cut(s)	83, 101, 107, 548
MmeI	TCCRAC	1 cut(s)	126
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	59
MvnI	CGCG	3 cut(s)	164, 260, 423
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	1 cut(s)	539
NlaIV	GGNNCC	2 cut(s)	369, 522
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	86
PleI	GAGTC	4 cut(s)	82, 100, 106, 548
PpsI	GAGTC	4 cut(s)	82, 100, 106, 548
PspN4I	GGNNCC	2 cut(s)	369, 522
RsaI	GTAC	3 cut(s)	71, 231, 401
RsaNI	GTAC	3 cut(s)	70, 230, 400
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	539
SchI	GAGTC	4 cut(s)	83, 101, 107, 548
SduI	GDGCHC	1 cut(s)	459
SetI	ASST	6 cut(s)	69, 228, 390, 405, 421, 516
SfaNI	GCATC	2 cut(s)	430, 490
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	4 cut(s)	164, 260, 306, 409
SspMI	CTAG	1 cut(s)	389
TaaI	ACNGT	1 cut(s)	234
TasI	AATT	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	17, 498
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.