Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006316

Physical Location & Seq

Genomic Coordinates Forward (+)

44432982 .. 44435164

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG270300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAAGGTTATGGAGGAAGTTGTGGAGGAAAACGAAGTGAAGCCTTTGACTGCCGAGGAATTGGAGCAGTACGAGTCCGTTTCCGAGTCCTCCGACTCTGACTCCGACGACGGCCTCGAAGACGAGGAAGAGGACGGCGACGAAGACGAGGATGACGACGACGACGACGACGCGGATGACGACGACGATGAGGATGAAGATGACGACGACGACGTCCAGGAGGTCGTACAGTCCTCCGGTGGCCCTCCGGTTCAGTCAATAGACGACGACGACGATGAGGACGAAGAAGACGAGGAAGGCGCTGAAGGAGGCGACGACGACGACGACGGCGAGGGAGATGACGATGACGATGACGATGACGGCGAGGGCGAGGATGAGGATGACATTGGGACTGAATATCTTGTTAGGCCAGTAGCCCGTGCGGAGGATGAGGAAGATGCAAGTGATTTTGAACCTGAAGAGAATGGAGAAGATGAAGATGTTGAGGAAGAAGAGGATGACGACGATGATGCTGGTGGGAAGGTCGAGGCTCCACCAAAGAGGAAGAGATCAGACAAGGATGATTCAGATGACGATGATGATGGTGGAGAGGATGATGTGAGACCCTCTAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.67

Weight (kDa)

4.05

Isoelectric Point (pI)

70.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47970
fragaria_vesca	FvH4_4g20460
malus_domestica	MD13G1149500.v1.1 MD16G1149800.v1.1
prunus_persica	Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1
pyrus_communis	pycom13g12870 pycom16g12830
rosa_chinensis	RchiOBHm_Chr4g0425941
rosa_laevigata	RLG00000004628 RLG00000007330 RLG00000015867 RLG00000027658
rosa_roxburghii	Rroxscaffold_5G00367950
rosa_rugosa	Rorug04G0207200 Rorug04G0207300.1 Rorug04G0207400 Rorug04G0207500
rosa_samantha	Rh3DG073600 Rh4AG264400 Rh4BG270300 Rh4CG282900 Rh4DG266800 Rh5BG314700 Rh6DG338900
rosa_wichuraiana	Rw4G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AatII	GACGTC	1 cut(s)	216
AccII	CGCG	1 cut(s)	173
AciI	CCGC	2 cut(s)	173, 422
AcuI	CTGAAG	2 cut(s)	324, 477
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	71, 228
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	1 cut(s)	452
AjnI	CCWGG	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	595
AoxI	GGCC	3 cut(s)	112, 241, 407
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	242
BbsI	GAAGAC	3 cut(s)	126, 150, 294
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	4 cut(s)	127, 151, 343, 376
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	595
BfoI	RGCGCY	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	427, 499
BpiI	GAAGAC	3 cut(s)	126, 150, 294
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	2 cut(s)	236, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	9 cut(s)	157, 181, 199, 379, 385, 433, 502, 565, 598
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseNI	ACTGG	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	114, 243, 409
BsiSI	CCGG	2 cut(s)	237, 248
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	595
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	3 cut(s)	114, 243, 409
Bso31I	GGTCTC	1 cut(s)	595
Bsp143I	GATC	1 cut(s)	548
BspACI	CCGC	2 cut(s)	173, 422
BspANI	GGCC	3 cut(s)	114, 243, 409
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	531
BspTNI	GGTCTC	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	548
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	231
Bst6I	CTCTTC	4 cut(s)	123, 453, 486, 539
BstACI	GRCGYC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	609
BstF5I	GGATG	9 cut(s)	157, 181, 199, 379, 385, 433, 502, 565, 598
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	1 cut(s)	551
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	1 cut(s)	548
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	173
BstV2I	GAAGAC	3 cut(s)	126, 150, 294
BsuRI	GGCC	3 cut(s)	114, 243, 409
BtsCI	GGATG	9 cut(s)	157, 181, 199, 379, 385, 433, 502, 565, 598
CfoI	GCGC	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	70, 227
CviJI	RGCY	6 cut(s)	43, 114, 243, 409, 416, 530
CviKI_1	RGCY	6 cut(s)	43, 114, 243, 409, 416, 530
CviQI	GTAC	2 cut(s)	70, 227
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	1 cut(s)	550
DpnII	GATC	1 cut(s)	548
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eam1104I	CTCTTC	4 cut(s)	123, 453, 486, 539
EarI	CTCTTC	4 cut(s)	123, 453, 486, 539
Eco31I	GGTCTC	1 cut(s)	595
Eco57I	CTGAAG	2 cut(s)	324, 477
EcoRII	CCWGG	1 cut(s)	216
FaiI	YATR	1 cut(s)	11
FaqI	GGGAC	1 cut(s)	403
FokI	GGATG	9 cut(s)	164, 188, 206, 386, 392, 440, 509, 572, 605
GlaI	GCGC	1 cut(s)	301
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	114, 243, 409
HapII	CCGG	2 cut(s)	237, 248
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	302
Hin1I	GRCGYC	1 cut(s)	213
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	5 cut(s)	74, 86, 95, 101, 563
HpaII	CCGG	2 cut(s)	237, 248
Hpy188I	TCNGA	6 cut(s)	85, 94, 100, 106, 553, 568
HpyAV	CCTTC	3 cut(s)	290, 299, 514
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	440
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	213
Hsp92I	GRCGYC	1 cut(s)	213
HspAI	GCGC	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	548
LmnI	GCTCC	2 cut(s)	64, 535
LpnPI	CCDG	7 cut(s)	203, 230, 250, 261, 423, 468, 498
LweI	GCATC	2 cut(s)	427, 499
MaeII	ACGT	1 cut(s)	213
MalI	GATC	1 cut(s)	550
MboI	GATC	1 cut(s)	548
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	4 cut(s)	83, 89, 95, 95
MmeI	TCCRAC	2 cut(s)	117, 129
MspI	CCGG	2 cut(s)	237, 248
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	173
NdeII	GATC	1 cut(s)	548
NlaIV	GGNNCC	1 cut(s)	531
NmeAIII	GCCGAG	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	563
PflFI	GACNNNGTC	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	216
PleI	GAGTC	4 cut(s)	82, 89, 94, 95
PpsI	GAGTC	4 cut(s)	82, 89, 94, 95
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	242
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	2 cut(s)	71, 228
RsaNI	GTAC	2 cut(s)	70, 227
Sau3AI	GATC	1 cut(s)	548
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	4 cut(s)	83, 89, 95, 95
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	5 cut(s)	9, 216, 225, 457, 525
SfaNI	GCATC	2 cut(s)	427, 499
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	173, 422
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	231
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	117, 525
TasI	AATT	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	563
TspDTI	ATGAA	3 cut(s)	17, 210, 489
TspGWI	ACGGA	1 cut(s)	67
Tth111I	GACNNNGTC	1 cut(s)	212
ZraI	GACGTC	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.