Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006316

Physical Location & Seq

Genomic Coordinates Reverse (-)

9021952 .. 9025827

Gene Structure 3876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G113500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGTTTATGGAGGAAGTTGTGGAGGAAAACGAAGTTAAGCCTTTGACTGCTGAGCAATTGGAGCAATATGAGTCGGAGTCTGAGTCTGAGTTAGATGACAGCCTAGGCGACGAAGAAGAGGATGGTGATGATGATGACGAGGACGACGACGACGACGACGATGTGGACGAAGACGATGACGACGATGAGGATGAAGACGAGGACGATGACGATGTGCAGGAGGTCGTACAGTCCTCTGGAGGTCCTCCAGTTCAGTCGGTCGATGACGAAGACGATGAGGATGAAGACGACGAAGAAGGTGAAGGAGGTGATGATGATGATGACGGCGAGGGAGACGACGACGACGACGACGACGACGAGGGCGAGGCTGAAGAGGAGGATGATATAGGAACGGAGTACCTCGTCCGGCCAGTAGGGCGTGCAGAGGATGAGGAAGATGCGAGCGATTTTGAGCCAGAAGAGAATGGAGAAGATGAAGATGTGGACGAAGAAGAAGATGAGGACGACGATGCGGGTGGGAAGGTGGAGGCTCCTCCAAAGAGAAAGAGATCATCAGATAAGGATGATTCAGATGGTGATGATGGTGGAGAGGATGATGAGAGACCCTCCAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.96

Weight (kDa)

4.05

Isoelectric Point (pI)

70.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47970
fragaria_vesca	FvH4_4g20460
malus_domestica	MD13G1149500.v1.1 MD16G1149800.v1.1
prunus_persica	Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1
pyrus_communis	pycom13g12870 pycom16g12830
rosa_chinensis	RchiOBHm_Chr4g0425941
rosa_laevigata	RLG00000004628 RLG00000007330 RLG00000015867 RLG00000027658
rosa_roxburghii	Rroxscaffold_5G00367950
rosa_rugosa	Rorug04G0207200 Rorug04G0207300.1 Rorug04G0207400 Rorug04G0207500
rosa_samantha	Rh3DG073600 Rh4AG264400 Rh4BG270300 Rh4CG282900 Rh4DG266800 Rh5BG314700 Rh6DG338900
rosa_wichuraiana	Rw4G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	2 cut(s)	231, 401
Alw26I	GTCTC	2 cut(s)	330, 598
AoxI	GGCC	1 cut(s)	410
AspA2I	CCTAGG	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	140, 314, 323, 590
AvaII	GGWCC	1 cut(s)	245
AvrII	CCTAGG	1 cut(s)	106
BbsI	GAAGAC	4 cut(s)	180, 204, 279, 294
BccI	CCATC	3 cut(s)	119, 569, 578
BceAI	ACGGC	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	330, 598
BfaI	CTAG	1 cut(s)	107
BglI	GCCNNNNNGGC	1 cut(s)	418
BlnI	CCTAGG	1 cut(s)	106
BlpI	GCTNAGC	1 cut(s)	54
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	534
BmsI	GCATC	2 cut(s)	430, 502
BpiI	GAAGAC	4 cut(s)	180, 204, 279, 294
BplI	GAGNNNNNCTC	1 cut(s)	593
BpmI	CTGGAG	2 cut(s)	234, 261
Bpu1102I	GCTNAGC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse1I	ACTGG	2 cut(s)	251, 413
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	7 cut(s)	130, 199, 289, 388, 436, 571, 601
BseMII	CTCAG	3 cut(s)	45, 75, 81
BseNI	ACTGG	2 cut(s)	251, 413
BseRI	GAGGAG	2 cut(s)	392, 525
BsgI	GTGCAG	2 cut(s)	239, 444
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	330, 598
BsmBI	CGTCTC	1 cut(s)	330
BsnI	GGCC	1 cut(s)	412
Bso31I	GGTCTC	1 cut(s)	598
Bsp143I	GATC	1 cut(s)	551
Bsp1720I	GCTNAGC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	3 cut(s)	46, 76, 82
BspLI	GGNNCC	1 cut(s)	534
BspTNI	GGTCTC	1 cut(s)	598
BsrI	ACTGG	2 cut(s)	251, 413
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	3 cut(s)	114, 369, 456
BstC8I	GCNNGC	2 cut(s)	423, 445
BstDEI	CTNAG	3 cut(s)	54, 84, 90
BstF5I	GGATG	7 cut(s)	130, 199, 289, 388, 436, 571, 601
BstKTI	GATC	1 cut(s)	554
BstMAI	GTCTC	2 cut(s)	330, 598
BstMBI	GATC	1 cut(s)	551
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	2 cut(s)	64, 418
BstV2I	GAAGAC	4 cut(s)	180, 204, 279, 294
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	7 cut(s)	130, 199, 289, 388, 436, 571, 601
Cac8I	GCNNGC	2 cut(s)	423, 445
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	230, 400
CviJI	RGCY	6 cut(s)	43, 105, 371, 412, 457, 533
CviKI_1	RGCY	6 cut(s)	43, 105, 371, 412, 457, 533
CviQI	GTAC	2 cut(s)	230, 400
DdeI	CTNAG	3 cut(s)	54, 84, 90
DpnI	GATC	1 cut(s)	553
DpnII	GATC	1 cut(s)	551
EaeI	YGGCCR	1 cut(s)	410
Eam1104I	CTCTTC	3 cut(s)	114, 369, 456
EarI	CTCTTC	3 cut(s)	114, 369, 456
Eco130I	CCWWGG	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	330
FaiI	YATR	3 cut(s)	11, 72, 389
FauI	CCCGC	1 cut(s)	508
FokI	GGATG	7 cut(s)	137, 206, 296, 395, 443, 578, 608
FspBI	CTAG	1 cut(s)	107
GsuI	CTGGAG	2 cut(s)	234, 261
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	409
HinfI	GANTC	4 cut(s)	74, 80, 86, 569
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	4 cut(s)	140, 314, 323, 590
Hpy166II	GTNNAC	2 cut(s)	169, 487
Hpy188I	TCNGA	5 cut(s)	79, 85, 91, 559, 574
Hpy188III	TCNNGA	1 cut(s)	240
Hpy8I	GTNNAC	2 cut(s)	169, 487
HpyAV	CCTTC	3 cut(s)	293, 299, 517
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	220, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	64, 418
HpyF3I	CTNAG	3 cut(s)	54, 84, 90
Kzo9I	GATC	1 cut(s)	551
LmnI	GCTCC	2 cut(s)	64, 538
LpnPI	CCDG	6 cut(s)	206, 225, 264, 422, 426, 471
LweI	GCATC	2 cut(s)	430, 502
MaeI	CTAG	1 cut(s)	107
MalI	GATC	1 cut(s)	553
MboI	GATC	1 cut(s)	551
MfeI	CAATTG	1 cut(s)	59
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	3 cut(s)	83, 89, 95
MmeI	TCCRAC	1 cut(s)	57
MseI	TTAA	1 cut(s)	39
MspI	CCGG	1 cut(s)	409
MunI	CAATTG	1 cut(s)	59
MwoI	GCNNNNNNNGC	2 cut(s)	64, 418
NdeII	GATC	1 cut(s)	551
NlaIV	GGNNCC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	569
PleI	GAGTC	3 cut(s)	82, 88, 94
PpsI	GAGTC	3 cut(s)	82, 88, 94
PpuMI	RGGWCCY	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	1 cut(s)	245
PspPPI	RGGWCCY	1 cut(s)	245
RsaI	GTAC	2 cut(s)	231, 401
RsaNI	GTAC	2 cut(s)	230, 400
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	551
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	3 cut(s)	83, 89, 95
SetI	ASST	6 cut(s)	228, 247, 304, 313, 405, 528
SfaNI	GCATC	2 cut(s)	430, 502
SinI	GGWCC	1 cut(s)	245
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	264
TaqII	GACCGA	1 cut(s)	250
TasI	AATT	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TspDTI	ATGAA	4 cut(s)	17, 210, 300, 492
TspGWI	ACGGA	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	245
XmaJI	CCTAGG	1 cut(s)	106
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.