Rh4DG266800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0006316
Physical Location & Seq
Forward (+)
48637695 .. 48639763
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG266800.1

Sequence Viewer

Length: 324 bp
ATGGGGACCCACTATCGAGATAAAAGAAAACCTAGGGTTAGATACCTCGAACGTCGCACGCGTCCCTCGCACGTGAGTAGCCGGGATGACATTGGGACTGAATACCTTGTTAGGCCAGTAGCCCGTGCAGAGGATGAGGAAGATGCAAGTGATTTTGAACCTGAAGAGAATGGAGAAGATGAAGATGTTGAGGAGGAAGAGGATGACGATGATGATACTGGTGGGAAGGTTGAGGCTCCGCCAAAGAGGAAGAGATCAGACAAGGATGATTCAGATGACGATGATGATGGTGGAGAGGATGATGTGAGACCCTCTAAGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.38

Weight (kDa)

4.38

Isoelectric Point (pI)

74.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 183
AcvI CACGTG 1 cut(s) 73
AfiI CCNNNNNNNGG 1 cut(s) 130
AflIII ACRYGT 1 cut(s) 59
AgsI TTSAA 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 301
AoxI GGCC 1 cut(s) 113
AspA2I CCTAGG 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 6
AvrII CCTAGG 1 cut(s) 32
BbrPI CACGTG 1 cut(s) 73
BccI CCATC 1 cut(s) 281
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 33
BlnI CCTAGG 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 3 cut(s) 7, 8, 237
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 116, 223
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 5 cut(s) 91, 139, 208, 271, 304
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 116, 223
BseRI GAGGAG 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 82
BslFI GGGAC 3 cut(s) 19, 48, 109
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 3 cut(s) 19, 48, 109
BsnI GGCC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 254
BspACI CCGC 1 cut(s) 239
BspANI GGCC 1 cut(s) 115
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 7, 8, 237
BspTNI GGTCTC 1 cut(s) 301
BsrI ACTGG 2 cut(s) 116, 223
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 32
Bst6I CTCTTC 3 cut(s) 159, 192, 245
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 5 cut(s) 91, 139, 208, 271, 304
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 81
BstUI CGCG 1 cut(s) 61
BsuRI GGCC 1 cut(s) 115
BtsCI GGATG 5 cut(s) 91, 139, 208, 271, 304
Cac8I GCNNGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 6
CseI GACGC 1 cut(s) 50
CviJI RGCY 4 cut(s) 81, 115, 122, 236
CviKI_1 RGCY 4 cut(s) 81, 115, 122, 236
DdeI CTNAG 1 cut(s) 315
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
Eam1104I CTCTTC 3 cut(s) 159, 192, 245
EarI CTCTTC 3 cut(s) 159, 192, 245
EciI GGCGGA 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 183
Eco72I CACGTG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaqI GGGAC 3 cut(s) 19, 48, 109
FokI GGATG 5 cut(s) 98, 146, 215, 278, 311
FspBI CTAG 1 cut(s) 33
HaeIII GGCC 1 cut(s) 115
HapII CCGG 1 cut(s) 82
HgaI GACGC 1 cut(s) 50
HinfI GANTC 1 cut(s) 269
HpaII CCGG 1 cut(s) 82
Hpy188I TCNGA 2 cut(s) 259, 274
Hpy188III TCNNGA 1 cut(s) 17
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 220
HpyCH4IV ACGT 2 cut(s) 52, 72
HpyCH4V TGCA 2 cut(s) 128, 146
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 2 cut(s) 52, 72
KflI GGGWCCC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 4 cut(s) 95, 129, 174, 204
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 33
MaeII ACGT 2 cut(s) 52, 72
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 6 cut(s) 152, 176, 188, 194, 209, 262
MluI ACGCGT 1 cut(s) 59
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 67
NciI CCSGG 1 cut(s) 83
NdeII GATC 1 cut(s) 254
NlaIV GGNNCC 3 cut(s) 7, 8, 237
PcsI WCGNNNNNNNCGW 1 cut(s) 58
PfeI GAWTC 1 cut(s) 269
PmaCI CACGTG 1 cut(s) 73
PmlI CACGTG 1 cut(s) 73
Ppu21I YACGTR 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 6
PspCI CACGTG 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 7, 8, 237
PspPI GGNCC 1 cut(s) 6
PspPPI RGGWCCY 1 cut(s) 6
Sau3AI GATC 1 cut(s) 254
Sau96I GGNCC 1 cut(s) 6
ScrFI CCNGG 1 cut(s) 83
SetI ASST 7 cut(s) 34, 48, 55, 75, 108, 163, 231
SfaNI GCATC 1 cut(s) 133
SinI GGWCC 1 cut(s) 6
SsiI CCGC 1 cut(s) 239
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 32
TaiI ACGT 2 cut(s) 55, 75
TaqI TCGA 2 cut(s) 16, 48
TfiI GAWTC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 6
XmaJI CCTAGG 1 cut(s) 32
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.