Rorug04G0207400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
36075951 .. 36076561
611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0207400.1

Sequence Viewer

Length: 288 bp
ATGAGTAATGACTGGCAAAGCACAGCCGCCTTTAACCCGATAGTGCAGAGAAAGAACAGTGTTGCTACATCTGTTAGCAGAGGGAAGGAGCTCAGTGTGAAAGAAGAAGAAGATGAGGCTATTATTCTAGATGATATCTTCTTCTTCTTCTTCTTCCACACTGAGCTCCGATCCTTCCCTCTGCTAACAGATGTAGCAATGCTTTTCCTTCTCTGCACTATCGGGATGAAGGTGTCTATGCTTTGCCATCCATTAATGCTCATGAGTTCTTCCAGACTGAGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.85

Weight (kDa)

5.46

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 165
AluBI AGCT 2 cut(s) 91, 166
AluI AGCT 2 cut(s) 91, 166
Alw21I GWGCWC 2 cut(s) 93, 168
AlwI GGATC 1 cut(s) 165
AseI ATTAAT 1 cut(s) 254
BanII GRGCYC 2 cut(s) 93, 168
Bbv12I GWGCWC 2 cut(s) 93, 168
BccI CCATC 1 cut(s) 255
BfaI CTAG 1 cut(s) 128
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 204
BseGI GGATG 2 cut(s) 231, 247
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 3 cut(s) 106, 153, 269
BseNI ACTGG 1 cut(s) 17
BsgI GTGCAG 2 cut(s) 65, 199
BsiHKAI GWGCWC 2 cut(s) 93, 168
Bsp1286I GDGCHC 2 cut(s) 93, 168
Bsp143I GATC 1 cut(s) 170
BspACI CCGC 1 cut(s) 27
BspCNI CTCAG 3 cut(s) 105, 154, 270
BspHI TCATGA 1 cut(s) 261
BspPI GGATC 1 cut(s) 165
BsrDI GCAATG 1 cut(s) 204
BsrI ACTGG 1 cut(s) 17
BssMI GATC 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 59
BstDEI CTNAG 3 cut(s) 92, 162, 278
BstF5I GGATG 2 cut(s) 231, 247
BstKTI GATC 1 cut(s) 173
BstMBI GATC 1 cut(s) 170
BtsCI GGATG 2 cut(s) 231, 247
BtsIMutI CAGTG 3 cut(s) 64, 100, 159
CciI TCATGA 1 cut(s) 261
CviAII CATG 1 cut(s) 262
CviJI RGCY 5 cut(s) 26, 91, 119, 166, 282
CviKI_1 RGCY 5 cut(s) 26, 91, 119, 166, 282
DdeI CTNAG 3 cut(s) 92, 162, 278
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
Ecl136II GAGCTC 2 cut(s) 91, 166
Eco24I GRGCYC 2 cut(s) 93, 168
Eco32I GATATC 1 cut(s) 136
Eco53kI GAGCTC 2 cut(s) 91, 166
EcoICRI GAGCTC 2 cut(s) 91, 166
EcoRV GATATC 1 cut(s) 136
EcoT38I GRGCYC 2 cut(s) 93, 168
FaeI CATG 1 cut(s) 265
FaiI YATR 2 cut(s) 239, 263
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 234, 238
FriOI GRGCYC 2 cut(s) 93, 168
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 128
GluI GCNGC 1 cut(s) 27
Hin1II CATG 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 4 cut(s) 128, 223, 262, 273
HpyAV CCTTC 4 cut(s) 79, 184, 218, 223
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 46, 216
HpyF3I CTNAG 3 cut(s) 92, 162, 278
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 1 cut(s) 170
LmnI GCTCC 2 cut(s) 88, 171
MaeI CTAG 1 cut(s) 128
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MhlI GDGCHC 2 cut(s) 93, 168
MnlI CCTC 3 cut(s) 74, 109, 189
MseI TTAA 2 cut(s) 33, 254
NdeII GATC 1 cut(s) 170
NlaIII CATG 1 cut(s) 265
PagI TCATGA 1 cut(s) 261
PkrI GCNGC 1 cut(s) 28
PshBI ATTAAT 1 cut(s) 254
Psp124BI GAGCTC 2 cut(s) 93, 168
SacI GAGCTC 2 cut(s) 93, 168
SaqAI TTAA 2 cut(s) 33, 254
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 170
SduI GDGCHC 2 cut(s) 93, 168
SetI ASST 3 cut(s) 93, 168, 234
SgeI CNNG 5 cut(s) 25, 49, 140, 235, 274
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 128
SstI GAGCTC 2 cut(s) 93, 168
TaaI ACNGT 1 cut(s) 59
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 33, 254
Tru9I TTAA 2 cut(s) 33, 254
TscAI CASTG 3 cut(s) 64, 100, 166
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 3 cut(s) 64, 100, 166
VspI ATTAAT 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 127
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.