Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006316

Physical Location & Seq

Genomic Coordinates Forward (+)

49767924 .. 49770094

Gene Structure 2171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAAGGTTATGGAGGAAGTTGTGGAGGAAAACGAAGTGAAGCCTTTGACTGCCGAGGAATTGGAGCAGTACGAGTCCGTTTCCGAGTCCTCCGACTCTGGCTCCGACGACGGCCTCGAAGACGAGGAAGAGGACGGCGACGAAGACGAGGATGACGACGACGACGACGACGCCGATGACGACGACGATGACGAGGATGAGGATGAAGATGACGACGACGACGGCGTCCAGGAGGTCGTACAGTCCTCCGGTGGCCCTCCGGTTCAGTCAATAGACGACGACGATGATGAGGACGAAGAAGACGAGGAAGGCGCTGAAGGAGGCGATGACGACGACGACGGCGAGGGAGATGACGACGACGATGACGACGACGGCGAGGGCGAGGATGAGGATGACATTGGGACTGAATACCTTGTTAGGCCAGTAGCCCGTGCTGAGGATGAGGAAGATGCAAGTGATTTTGAACCTGAAGAGAATGGAGAAGATGAAGATGTTGAGGAAGAAGAGGATGACGACGACGATACTGGTGGGAAGGTTGAGGCTCCGCCAAAGAGGAAGAGATCAGACAAGGATGATTCAGATGACGATGATGATGGTGGAGAGGATGATGTGAGACCCTCTAAGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.06

Weight (kDa)

4.05

Isoelectric Point (pI)

67.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47970
fragaria_vesca	FvH4_4g20460
malus_domestica	MD13G1149500.v1.1 MD16G1149800.v1.1
prunus_persica	Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1 Prupe.1G113500_v2.0.a1
pyrus_communis	pycom13g12870 pycom16g12830
rosa_chinensis	RchiOBHm_Chr4g0425941
rosa_laevigata	RLG00000004628 RLG00000007330 RLG00000015867 RLG00000027658
rosa_roxburghii	Rroxscaffold_5G00367950
rosa_rugosa	Rorug04G0207200 Rorug04G0207300.1 Rorug04G0207400 Rorug04G0207500
rosa_samantha	Rh3DG073600 Rh4AG264400 Rh4BG270300 Rh4CG282900 Rh4DG266800 Rh5BG314700 Rh6DG338900
rosa_wichuraiana	Rw4G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AciI	CCGC	1 cut(s)	545
AcuI	CTGAAG	2 cut(s)	336, 489
AcyI	GRCGYC	2 cut(s)	171, 225
AfaI	GTAC	2 cut(s)	71, 240
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	607
AoxI	GGCC	3 cut(s)	112, 253, 419
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	254
BbsI	GAAGAC	3 cut(s)	126, 150, 306
BbvCI	CCTCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	587
BceAI	ACGGC	5 cut(s)	127, 151, 238, 355, 388
BciT130I	CCWGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	607
BfoI	RGCGCY	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	103, 543
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	439
BpiI	GAAGAC	3 cut(s)	126, 150, 306
Bpu10I	CCTNAGC	1 cut(s)	435
BsaHI	GRCGYC	2 cut(s)	171, 225
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	2 cut(s)	248, 259
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	422, 529
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	9 cut(s)	157, 202, 208, 391, 397, 445, 514, 577, 610
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	422, 529
BshFI	GGCC	3 cut(s)	114, 255, 421
BsiSI	CCGG	2 cut(s)	249, 260
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	114, 255, 421
Bso31I	GGTCTC	1 cut(s)	607
Bsp143I	GATC	1 cut(s)	560
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	3 cut(s)	114, 255, 421
BspCNI	CTCAG	1 cut(s)	427
BspLI	GGNNCC	2 cut(s)	103, 543
BspTNI	GGTCTC	1 cut(s)	607
BsrI	ACTGG	2 cut(s)	422, 529
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	560
BssNI	GRCGYC	2 cut(s)	171, 225
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	4 cut(s)	123, 465, 498, 551
BstACI	GRCGYC	2 cut(s)	171, 225
BstDEI	CTNAG	2 cut(s)	435, 621
BstF5I	GGATG	9 cut(s)	157, 202, 208, 391, 397, 445, 514, 577, 610
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	1 cut(s)	563
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	1 cut(s)	560
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstV2I	GAAGAC	3 cut(s)	126, 150, 306
BsuRI	GGCC	3 cut(s)	114, 255, 421
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	9 cut(s)	157, 202, 208, 391, 397, 445, 514, 577, 610
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	2 cut(s)	179, 214
Csp6I	GTAC	2 cut(s)	70, 239
CviJI	RGCY	7 cut(s)	43, 102, 114, 255, 421, 428, 542
CviKI_1	RGCY	7 cut(s)	43, 102, 114, 255, 421, 428, 542
CviQI	GTAC	2 cut(s)	70, 239
DdeI	CTNAG	2 cut(s)	435, 621
DpnI	GATC	1 cut(s)	562
DpnII	GATC	1 cut(s)	560
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eam1104I	CTCTTC	4 cut(s)	123, 465, 498, 551
EarI	CTCTTC	4 cut(s)	123, 465, 498, 551
EciI	GGCGGA	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	607
Eco57I	CTGAAG	2 cut(s)	336, 489
EcoRII	CCWGG	1 cut(s)	228
FaiI	YATR	1 cut(s)	11
FaqI	GGGAC	1 cut(s)	415
FokI	GGATG	9 cut(s)	164, 209, 215, 398, 404, 452, 521, 584, 617
GlaI	GCGC	1 cut(s)	313
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	114, 255, 421
HapII	CCGG	2 cut(s)	249, 260
HgaI	GACGC	2 cut(s)	179, 214
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	2 cut(s)	171, 225
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	4 cut(s)	74, 86, 95, 575
HpaII	CCGG	2 cut(s)	249, 260
Hpy188I	TCNGA	5 cut(s)	85, 94, 106, 565, 580
HpyAV	CCTTC	3 cut(s)	302, 311, 526
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	435, 621
Hsp92I	GRCGYC	2 cut(s)	171, 225
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	1 cut(s)	560
LmnI	GCTCC	3 cut(s)	64, 107, 547
LpnPI	CCDG	8 cut(s)	84, 215, 242, 262, 273, 435, 480, 510
LweI	GCATC	1 cut(s)	439
MalI	GATC	1 cut(s)	562
MboI	GATC	1 cut(s)	560
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	3 cut(s)	83, 89, 95
MmeI	TCCRAC	2 cut(s)	117, 129
MspI	CCGG	2 cut(s)	249, 260
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	560
NlaIV	GGNNCC	2 cut(s)	103, 543
NmeAIII	GCCGAG	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	575
PflFI	GACNNNGTC	1 cut(s)	224
PfoI	TCCNGGA	1 cut(s)	228
PleI	GAGTC	3 cut(s)	82, 89, 94
PpsI	GAGTC	3 cut(s)	82, 89, 94
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	103, 543
PspPI	GGNCC	1 cut(s)	254
PsyI	GACNNNGTC	1 cut(s)	224
RsaI	GTAC	2 cut(s)	71, 240
RsaNI	GTAC	2 cut(s)	70, 239
Sau3AI	GATC	1 cut(s)	560
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	3 cut(s)	83, 89, 95
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	5 cut(s)	9, 237, 414, 469, 537
SfaNI	GCATC	1 cut(s)	439
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	575
TspDTI	ATGAA	3 cut(s)	17, 219, 501
TspGWI	ACGGA	1 cut(s)	67
Tth111I	GACNNNGTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.