AT1G50420

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
18677694 .. 18680300
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50420.1

Sequence Viewer

Length: 1449 bp
ATGGTGGCTATGTTTCAAGAAGATAATGGAACATCTTCTGTAGCTTCATCACCACTTCAAGTCTTCTCAACTATGTCACTCAACAGACCGACTCTCCTCGCTTCTTCATCTCCGTTTCATTGTCTCAAAGATCTCAAACCAGAGGAGCGTGGTCTCTACTTAATCCACCTCTTGCTAACTTGTGCCAACCACGTGGCTTCAGGTAGCCTCCAAAACGCTAACGCAGCGCTCGAGCAGCTCTCTCACCTCGCTTCTCCTGACGGCGACACGATGCAGCGAATCGCTGCTTACTTCACCGAAGCGCTTGCTAACAGAATCCTTAAGTCCTGGCCTGGTCTTTACAAGGCTCTTAACGCAACTCAGACAAGAACTAACAATGTCTCTGAGGAGATTCATGTTAGAAGACTCTTCTTTGAGATGTTCCCGATACTCAAAGTCTCTTACTTGCTCACTAATCGAGCTATACTCGAGGCTATGGAAGGAGAGAAGATGGTTCATGTGATTGATCTCGATGCTTCTGAGCCAGCTCAATGGCTTGCTTTGCTTCAAGCTTTTAACTCTAGGCCTGAAGGTCCACCTCATTTGAGAATCACTGGTGTTCATCACCAGAAGGAAGTGCTTGAACAAATGGCTCATAGACTCATTGAGGAAGCAGAGAAACTCGATATCCCGTTTCAGTTTAATCCCGTTGTGAGTAGGTTAGACTGTTTAAATGTAGAACAGTTGCGGGTTAAAACAGGAGAGGCCTTAGCCGTTAGCTCGGTTCTTCAATTGCATACCTTCTTGGCCTCTGATGATGATCTCATGAGAAAGAACTGCGCTTTACGGTTTCAGAACAACCCTAGTGGAGTTGACTTGCAGAGAGTTCTAATGATGAGCCATGGCTCTGCAGCTGAGGCACGTGAGAATGATATGAGTAACAACAATGGGTATAGCCCTAGCGGTGACTCGGCCTCATCTTTGCCTTTACCAAGTTCAGGAAGGACTGATAGCTTCCTCAATGCTATTTGGGGTTTGTCTCCAAAGGTCATGGTGGTCACTGAGCAAGACTCAGACCACAACGGCTCCACACTAATGGAGAGGCTATTAGAATCACTTTACACCTACGCAGCATTGTTTGATTGCTTGGAAACAAAAGTTCCAAGAACGTCTCAAGATAGGATCAAAGTGGAGAAGATGCTCTTCGGGGAGGAGATCAAGAACATCATATCCTGCGAGGGATTTGAGAGAAGAGAAAGACACGAGAAGCTTGAGAAATGGAGCCAGAGGATCGATTTGGCTGGTTTTGGGAATGTTCCTCTTAGCTATTATGCGATGTTGCAGGCTAGGAGATTGCTTCAAGGGTGCGGTTTTGATGGGTATAGAATCAAGGAAGAGAGCGGGTGCGCAGTAATTTGCTGGCAAGATCGACCTCTATACTCGGTATCAGCTTGGAGATGCAGGAAGTGA

Protein Analysis

482

Amino Acids

54.15

Weight (kDa)

6.0

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 54 - 479 2e-131 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1387
AccBSI CCGCTC 1 cut(s) 1380
AciI CCGC 4 cut(s) 727, 942, 1347, 1380
AclWI GGATC 2 cut(s) 1169, 1277
AcuI CTGAAG 2 cut(s) 183, 588
AcvI CACGTG 2 cut(s) 193, 902
AfeI AGCGCT 2 cut(s) 228, 303
AfiI CCNNNNNNNGG 1 cut(s) 977
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 6 cut(s) 17, 59, 548, 623, 770, 1340
AjnI CCWGG 2 cut(s) 326, 331
AloI GAACNNNNNNTCC 2 cut(s) 1193, 1225
Alw26I GTCTC 6 cut(s) 128, 158, 385, 442, 1023, 1155
AlwI GGATC 2 cut(s) 1169, 1277
Ama87I CYCGRG 2 cut(s) 230, 467
Aor51HI AGCGCT 2 cut(s) 228, 303
AoxI GGCC 5 cut(s) 329, 563, 744, 786, 951
ApeKI GCWGC 6 cut(s) 224, 235, 274, 284, 890, 1109
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 4 cut(s) 229, 304, 821, 1388
AspS9I GGNCC 1 cut(s) 572
AsuHPI GGTGA 5 cut(s) 42, 236, 286, 596, 956
AvaI CYCGRG 2 cut(s) 230, 467
AvaII GGWCC 1 cut(s) 572
BauI CACGAG 1 cut(s) 1241
BbrPI CACGTG 2 cut(s) 193, 902
BbsI GAAGAC 2 cut(s) 55, 409
BbvCI CCTCAGC 1 cut(s) 894
BbvI GCAGC 6 cut(s) 236, 247, 271, 286, 902, 1121
BccI CCATC 2 cut(s) 484, 1349
BceAI ACGGC 3 cut(s) 277, 737, 1078
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 2 cut(s) 328, 333
BcoDI GTCTC 6 cut(s) 128, 158, 385, 442, 1023, 1155
BfaI CTAG 4 cut(s) 561, 843, 939, 1326
BfmI CTRYAG 2 cut(s) 39, 888
BfoI RGCGCY 2 cut(s) 230, 305
BfrI CTTAAG 1 cut(s) 320
BglII AGATCT 1 cut(s) 130
BisI GCNGC 6 cut(s) 225, 236, 275, 285, 891, 1110
BlsI GCNGC 6 cut(s) 226, 237, 276, 286, 892, 1111
Bme1390I CCNGG 2 cut(s) 328, 333
Bme18I GGWCC 1 cut(s) 572
BmeT110I CYCGRG 2 cut(s) 230, 467
BmgT120I GGNCC 1 cut(s) 572
BmiI GGNNCC 2 cut(s) 1066, 1262
BmrFI CCNGG 2 cut(s) 328, 333
BmsI GCATC 4 cut(s) 261, 502, 1167, 1427
BpiI GAAGAC 2 cut(s) 55, 409
BplI GAGNNNNNCTC 6 cut(s) 224, 256, 450, 482, 1034, 1066
Bpu10I CCTNAGC 2 cut(s) 748, 894
BpuEI CTTGAG 2 cut(s) 1137, 1271
Bsa29I ATCGAT 1 cut(s) 1272
BsaAI YACGTR 2 cut(s) 193, 902
BsaBI GATNNNNATC 1 cut(s) 798
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 880
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 1049, 1079
Bsc4I CCNNNNNNNGG 1 cut(s) 977
Bse1I ACTGG 1 cut(s) 598
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 2 cut(s) 328, 333
BseCI ATCGAT 1 cut(s) 1272
BseDI CCNNGG 1 cut(s) 880
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 1 cut(s) 977
BseMII CTCAG 6 cut(s) 374, 375, 510, 885, 1032, 1065
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 4 cut(s) 86, 158, 401, 1205
BseXI GCAGC 6 cut(s) 236, 247, 271, 286, 902, 1121
BshFI GGCC 5 cut(s) 331, 565, 746, 788, 953
BshVI ATCGAT 1 cut(s) 1272
BsiHKCI CYCGRG 2 cut(s) 230, 467
BslI CCNNNNNNNGG 1 cut(s) 977
BsmAI GTCTC 6 cut(s) 128, 158, 385, 442, 1023, 1155
BsmBI CGTCTC 1 cut(s) 1155
BsnI GGCC 5 cut(s) 331, 565, 746, 788, 953
Bso31I GGTCTC 1 cut(s) 158
BsoBI CYCGRG 2 cut(s) 230, 467
Bsp143I GATC 7 cut(s) 130, 505, 799, 1161, 1194, 1269, 1405
Bsp19I CCATGG 1 cut(s) 880
BspACI CCGC 4 cut(s) 727, 942, 1347, 1380
BspANI GGCC 5 cut(s) 331, 565, 746, 788, 953
BspCNI CTCAG 6 cut(s) 373, 376, 511, 886, 1033, 1064
BspDI ATCGAT 1 cut(s) 1272
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 2 cut(s) 1066, 1262
BspMAI CTGCAG 1 cut(s) 892
BspPI GGATC 2 cut(s) 1169, 1277
BspQI GCTCTTC 1 cut(s) 1187
BspTI CTTAAG 1 cut(s) 320
BspTNI GGTCTC 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 1380
BsrI ACTGG 1 cut(s) 598
BssECI CCNNGG 1 cut(s) 880
BssMI GATC 7 cut(s) 130, 505, 799, 1161, 1194, 1269, 1405
BssSI CACGAG 1 cut(s) 1241
BssT1I CCWWGG 1 cut(s) 880
Bst2BI CACGAG 1 cut(s) 1241
Bst2UI CCWGG 2 cut(s) 328, 333
Bst4CI ACNGT 3 cut(s) 707, 723, 828
Bst6I CTCTTC 4 cut(s) 413, 1187, 1225, 1368
BstAFI CTTAAG 1 cut(s) 320
BstBAI YACGTR 2 cut(s) 193, 902
BstC8I GCNNGC 5 cut(s) 306, 525, 537, 1323, 1400
BstDEI CTNAG 8 cut(s) 360, 384, 519, 748, 894, 1041, 1051, 1301
BstDSI CCRYGG 1 cut(s) 880
BstH2I RGCGCY 2 cut(s) 230, 305
BstHHI GCGC 4 cut(s) 229, 304, 821, 1388
BstKTI GATC 7 cut(s) 133, 508, 802, 1164, 1197, 1272, 1408
BstMAI GTCTC 6 cut(s) 128, 158, 385, 442, 1023, 1155
BstMBI GATC 7 cut(s) 130, 505, 799, 1161, 1194, 1269, 1405
BstMWI GCNNNNNNNGC 5 cut(s) 224, 235, 353, 541, 896
BstNI CCWGG 2 cut(s) 328, 333
BstSCI CCNGG 2 cut(s) 326, 331
BstSFI CTRYAG 2 cut(s) 39, 888
BstV1I GCAGC 6 cut(s) 236, 247, 271, 286, 902, 1121
BstV2I GAAGAC 2 cut(s) 55, 409
BstX2I RGATCY 1 cut(s) 130
BstXI CCANNNNNNTGG 3 cut(s) 193, 531, 1075
BstYI RGATCY 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 1272
BsuRI GGCC 5 cut(s) 331, 565, 746, 788, 953
BsuTUI ATCGAT 1 cut(s) 1272
BtgI CCRYGG 1 cut(s) 880
BtgZI GCGATG 1 cut(s) 1328
BtsIMutI CAGTG 2 cut(s) 591, 1038
Cac8I GCNNGC 5 cut(s) 306, 525, 537, 1323, 1400
CciI TCATGA 1 cut(s) 804
CfoI GCGC 4 cut(s) 229, 304, 821, 1388
Cfr13I GGNCC 1 cut(s) 572
ClaI ATCGAT 1 cut(s) 1272
CspCI CAANNNNNGTGG 4 cut(s) 564, 599, 826, 861
CviAII CATG 5 cut(s) 395, 497, 805, 881, 1030
DdeI CTNAG 8 cut(s) 360, 384, 519, 748, 894, 1041, 1051, 1301
DpnI GATC 7 cut(s) 132, 507, 801, 1163, 1196, 1271, 1407
DpnII GATC 7 cut(s) 130, 505, 799, 1161, 1194, 1269, 1405
DraI TTTAAA 1 cut(s) 711
Eam1104I CTCTTC 4 cut(s) 413, 1187, 1225, 1368
EarI CTCTTC 4 cut(s) 413, 1187, 1225, 1368
Eco130I CCWWGG 1 cut(s) 880
Eco147I AGGCCT 2 cut(s) 565, 746
Eco31I GGTCTC 1 cut(s) 158
Eco32I GATATC 1 cut(s) 667
Eco47I GGWCC 1 cut(s) 572
Eco47III AGCGCT 2 cut(s) 228, 303
Eco57I CTGAAG 2 cut(s) 183, 588
Eco72I CACGTG 2 cut(s) 193, 902
Eco88I CYCGRG 2 cut(s) 230, 467
EcoRII CCWGG 2 cut(s) 326, 331
EcoRV GATATC 1 cut(s) 667
EcoT14I CCWWGG 1 cut(s) 880
ErhI CCWWGG 1 cut(s) 880
Esp3I CGTCTC 1 cut(s) 1155
FaeI CATG 5 cut(s) 398, 500, 808, 884, 1033
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FatI CATG 5 cut(s) 394, 496, 804, 880, 1029
FauI CCCGC 2 cut(s) 720, 1373
Fnu4HI GCNGC 6 cut(s) 225, 236, 275, 285, 891, 1110
Fsp4HI GCNGC 6 cut(s) 225, 236, 275, 285, 891, 1110
FspBI CTAG 4 cut(s) 561, 843, 939, 1326
FspI TGCGCA 1 cut(s) 1387
GlaI GCGC 4 cut(s) 228, 303, 820, 1387
GluI GCNGC 6 cut(s) 225, 236, 275, 285, 891, 1110
HaeII RGCGCY 2 cut(s) 230, 305
HaeIII GGCC 5 cut(s) 331, 565, 746, 788, 953
HhaI GCGC 4 cut(s) 229, 304, 821, 1388
Hin1II CATG 5 cut(s) 398, 500, 808, 884, 1033
Hin6I GCGC 4 cut(s) 227, 302, 819, 1386
HinP1I GCGC 4 cut(s) 227, 302, 819, 1386
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HindIII AAGCTT 2 cut(s) 549, 1247
HphI GGTGA 5 cut(s) 42, 236, 286, 596, 956
Hpy166II GTNNAC 2 cut(s) 575, 853
Hpy188I TCNGA 6 cut(s) 363, 385, 520, 793, 834, 1054
Hpy188III TCNNGA 8 cut(s) 17, 257, 424, 509, 805, 978, 1154, 1198
Hpy8I GTNNAC 2 cut(s) 575, 853
HpyAV CCTTC 5 cut(s) 473, 563, 604, 790, 975
HpyCH4III ACNGT 3 cut(s) 707, 723, 828
HpyCH4IV ACGT 3 cut(s) 192, 901, 1148
HpyCH4V TGCA 6 cut(s) 274, 775, 859, 890, 1321, 1440
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 235, 353, 541, 896
HpyF3I CTNAG 8 cut(s) 360, 384, 519, 748, 894, 1041, 1051, 1301
HpySE526I ACGT 3 cut(s) 192, 901, 1148
Hsp92II CATG 5 cut(s) 398, 500, 808, 884, 1033
HspAI GCGC 4 cut(s) 227, 302, 819, 1386
Kzo9I GATC 7 cut(s) 130, 505, 799, 1161, 1194, 1269, 1405
LguI GCTCTTC 1 cut(s) 1187
LmnI GCTCC 3 cut(s) 145, 1070, 1260
Lsp1109I GCAGC 6 cut(s) 236, 247, 271, 286, 902, 1121
LweI GCATC 4 cut(s) 261, 502, 1167, 1427
MaeI CTAG 4 cut(s) 561, 843, 939, 1326
MaeII ACGT 3 cut(s) 192, 901, 1148
MaeIII GTNAC 4 cut(s) 75, 917, 944, 1036
MalI GATC 7 cut(s) 132, 507, 801, 1163, 1196, 1271, 1407
MbiI CCGCTC 1 cut(s) 1380
MboI GATC 7 cut(s) 130, 505, 799, 1161, 1194, 1269, 1405
MfeI CAATTG 1 cut(s) 770
MflI RGATCY 1 cut(s) 130
MluCI AATT 2 cut(s) 770, 1392
MlyI GAGTC 5 cut(s) 85, 399, 633, 941, 1043
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 7 cut(s) 161, 321, 351, 555, 681, 710, 732
MslI CAYNNNNRTG 1 cut(s) 1073
MspA1I CMGCKG 1 cut(s) 893
MspCI CTTAAG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 328, 333
MunI CAATTG 1 cut(s) 770
MvaI CCWGG 2 cut(s) 328, 333
MwoI GCNNNNNNNGC 5 cut(s) 224, 235, 353, 541, 896
NcoI CCATGG 1 cut(s) 880
NdeII GATC 7 cut(s) 130, 505, 799, 1161, 1194, 1269, 1405
NlaIII CATG 5 cut(s) 398, 500, 808, 884, 1033
NlaIV GGNNCC 2 cut(s) 1066, 1262
NmeAIII GCCGAG 1 cut(s) 929
NmuCI GTSAC 3 cut(s) 75, 944, 1036
NsbI TGCGCA 1 cut(s) 1387
PaeR7I CTCGAG 2 cut(s) 230, 467
PagI TCATGA 1 cut(s) 804
PceI AGGCCT 2 cut(s) 565, 746
PciSI GCTCTTC 1 cut(s) 1187
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 6 cut(s) 279, 315, 391, 588, 1091, 1365
PkrI GCNGC 6 cut(s) 226, 237, 276, 286, 892, 1111
PleI GAGTC 5 cut(s) 85, 399, 633, 941, 1043
PmaCI CACGTG 2 cut(s) 193, 902
PmlI CACGTG 2 cut(s) 193, 902
PpsI GAGTC 5 cut(s) 85, 399, 633, 941, 1043
Ppu21I YACGTR 2 cut(s) 193, 902
Psp6I CCWGG 2 cut(s) 326, 331
PspCI CACGTG 2 cut(s) 193, 902
PspGI CCWGG 2 cut(s) 326, 331
PspN4I GGNNCC 2 cut(s) 1066, 1262
PspPI GGNCC 1 cut(s) 572
PspXI VCTCGAGB 2 cut(s) 230, 467
PstI CTGCAG 1 cut(s) 892
PsuI RGATCY 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 893
RseI CAYNNNNRTG 1 cut(s) 1073
SapI GCTCTTC 1 cut(s) 1187
SaqAI TTAA 7 cut(s) 161, 321, 351, 555, 681, 710, 732
SatI GCNGC 6 cut(s) 225, 236, 275, 285, 891, 1110
Sau3AI GATC 7 cut(s) 130, 505, 799, 1161, 1194, 1269, 1405
Sau96I GGNCC 1 cut(s) 572
SchI GAGTC 5 cut(s) 85, 399, 633, 941, 1043
ScrFI CCNGG 2 cut(s) 328, 333
SfaNI GCATC 4 cut(s) 261, 502, 1167, 1427
SfcI CTRYAG 2 cut(s) 39, 888
Sfr274I CTCGAG 2 cut(s) 230, 467
SinI GGWCC 1 cut(s) 572
SlaI CTCGAG 2 cut(s) 230, 467
SmiMI CAYNNNNRTG 1 cut(s) 1073
SmlI CTYRAG 5 cut(s) 230, 320, 467, 1152, 1250
SmoI CTYRAG 5 cut(s) 230, 320, 467, 1152, 1250
Sse9I AATT 2 cut(s) 770, 1392
SseBI AGGCCT 2 cut(s) 565, 746
SsiI CCGC 4 cut(s) 727, 942, 1347, 1380
SspMI CTAG 4 cut(s) 561, 843, 939, 1326
StuI AGGCCT 2 cut(s) 565, 746
StyD4I CCNGG 2 cut(s) 326, 331
StyI CCWWGG 1 cut(s) 880
TaaI ACNGT 3 cut(s) 707, 723, 828
TaiI ACGT 3 cut(s) 195, 904, 1151
TaqI TCGA 7 cut(s) 231, 457, 468, 510, 663, 1272, 1408
TaqII GACCGA 1 cut(s) 103
TasI AATT 2 cut(s) 770, 1392
TfiI GAWTC 6 cut(s) 279, 315, 391, 588, 1091, 1365
Tru1I TTAA 7 cut(s) 161, 321, 351, 555, 681, 710, 732
Tru9I TTAA 7 cut(s) 161, 321, 351, 555, 681, 710, 732
TscAI CASTG 2 cut(s) 598, 1045
TseFI GTSAC 3 cut(s) 75, 944, 1036
TseI GCWGC 6 cut(s) 224, 235, 274, 284, 890, 1109
Tsp45I GTSAC 3 cut(s) 75, 944, 1036
TspDTI ATGAA 6 cut(s) 36, 96, 107, 383, 485, 590
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 2 cut(s) 598, 1045
Vha464I CTTAAG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 572
XhoI CTCGAG 2 cut(s) 230, 467
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 4 cut(s) 561, 843, 939, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.