Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002137

Physical Location & Seq

Genomic Coordinates Reverse (-)

22950582 .. 22951965

Gene Structure 1384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCACAAGAGGACGGGTCACCAGTAACTTCATCAGCGCTGCAGTTCTTTCCCTGGCTATCTCCTGGGATAGGATCTCCATACTCACCATGGCTCAGGGAGCTAAAATCTGAGGAGAGAGGTTTATGCCTGATCCAGCTTCTTTACGCCTGTGCTAGCCATGTCGCATCGGGTAGCATCGAGAATGCAAATATTTGGCTTGACCAGACTTGTCAGCTCGCCTCTCCTGATGGTGATTCAATGCAGAGAATAGCCGCTTATTTCACTGAGGCACTTGCAGACCGGATGCTTAAAGGTTTGCCCGGTCTGCATAAAGCGCTTAATTCAACAAAAATATCATCAGTCTCGGAAGAAATTCTTGTTCAAAGGCTGTTCTTTGATCTATGTCCTTTCCTAAAGGTTGCATATGTGGTCACAAATCGGGCCATAGTGGAAGCCATGGAAGGGGAGAAGATGTGGATTAATCTGATTCAGACGTTAAATGCACGACCTGAAGGCCCGCCTCATTTGAGAATTACTGGCATTCATGAACAAAAAGAAGTATTAGACCAGATGTTCCTTCGGTTGACAGAAGAAGCTGAAAATCTGAACATCCCATTTCAGTTCAATGCTATAGTTAGCAAGCTAGAGAACCTTGATATCGAAAGTTTGCGTGTCAAGACTGGAGAGGCTCTGGCAGTATGCTCCATACTGCAGCTACATTCTCTCTTGGCAAGTGATGATGATCAGAGGAGGAAAACACCAATAGCATCTAAGAACCTGCAGAAAGTCCTGCATATGAATAAACTCACTTTAGGAGAGTGGCTGGAGAAAGATCCAATTAACGGCAGTCCCGATTCTGCTTTGTCCCCGCTATCAAGTGCTTCACCAAAGATGGGGAGTTTTTTAACTTCTCTTTGGGGCCTTTCGCCAAAACTAATGGTAATAACAGAGCAAGAGGCAAACCACAATGGCCATACATTGATGGACAGATCGATCATGGAAGCATTATACTTCTATGGAGCACTTTTTGATTGCTTAGAGTCTACAGTATCGAGATCACCAATGGAGCGACAAAAGGTTGAGAAGCTGCTTTTCGATGAGGAAATAAAAAACATCATAGCATGTGAAGGAACTGAGCGAACGGAGAGGCATGAGAAGCTTGAGAAGTGGATTTTAAGGCTTGAGTTGGCTGGGTTTGGCAGGGTGCCTTTGAGCTACAACGGAATGTTGCAGGCTACGGAGCTGTTGCGTGGCTATGACGGGTACAAGATTAAAGAATATAATGGATGTGTGGTTATTTGCTGGCACGACAGACCTCTTTTTTCGATTTCAGGCTGGAGGTTTAGGAGATACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

447

Amino Acids

50.4

Weight (kDa)

5.69

Isoelectric Point (pI)

55.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50420
fragaria_vesca	FvH4_7g02290 FvH4_7g02290
malus_domestica	MD02G1295800.v1.1 MD07G1030000.v1.1 MD11G1196300.v1.1
prunus_persica	Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.4G258200_v2.0.a1
pyrus_communis	pycom02g24850 pycom03g12560 pycom07g02200 pycom11g16370
rosa_chinensis	RchiOBHm_Chr1g0319641 RchiOBHm_Chr5g0050921
rosa_laevigata	RLG00000030469 RLG00000034747
rosa_multiflora	Rmu_sc0002539.1_g000095 Rmu_sc0004572.1_g000002 Rmu_sc0017334.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029800
rosa_rugosa	Rorug01G0028900 Rorug01G0029000 Rorug01G0029100 Rorug05G0293900
rosa_samantha	Rh1AG040700 Rh1BG037900 Rh1CG041800 Rh1DG028100 Rh5AG337000 Rh5BG346600 Rh5DG359600
rosa_wichuraiana	Rw0G019990 Rw1G003380 Rw5G031800 Rw5G031860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	768
AccB1I	GGYRCC	1 cut(s)	1186
AccI	GTMKAC	1 cut(s)	1025
AciI	CCGC	3 cut(s)	255, 500, 851
AclWI	GGATC	3 cut(s)	82, 127, 809
AcoI	YGGCCR	1 cut(s)	952
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	1 cut(s)	1247
AfeI	AGCGCT	2 cut(s)	39, 318
AfiI	CCNNNNNNNGG	4 cut(s)	71, 444, 824, 875
AgsI	TTSAA	4 cut(s)	240, 327, 365, 607
AjnI	CCWGG	2 cut(s)	53, 64
Alw21I	GWGCWC	1 cut(s)	1006
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	3 cut(s)	82, 127, 809
Aor51HI	AGCGCT	2 cut(s)	39, 318
AoxI	GGCC	4 cut(s)	423, 496, 901, 952
ApeKI	GCWGC	3 cut(s)	40, 694, 1069
ApoI	RAATTY	1 cut(s)	354
AseI	ATTAAT	1 cut(s)	462
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	2 cut(s)	40, 319
AspS9I	GGNCC	3 cut(s)	423, 497, 901
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	5 cut(s)	12, 78, 245, 858, 1032
AsuNHI	GCTAGC	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	954
BanI	GGYRCC	1 cut(s)	1186
Bbv12I	GWGCWC	1 cut(s)	1006
BbvI	GCAGC	3 cut(s)	27, 706, 1056
BccI	CCATC	3 cut(s)	224, 868, 958
BceAI	ACGGC	1 cut(s)	841
BciT130I	CCWGG	2 cut(s)	55, 66
BclI	TGATCA	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	2 cut(s)	156, 626
BfmI	CTRYAG	5 cut(s)	41, 612, 692, 761, 1026
BfoI	RGCGCY	2 cut(s)	41, 320
BfuAI	ACCTGC	1 cut(s)	768
BisI	GCNGC	4 cut(s)	41, 255, 695, 1070
BlsI	GCNGC	4 cut(s)	42, 256, 696, 1071
Bme1390I	CCNGG	3 cut(s)	55, 66, 303
BmgT120I	GGNCC	3 cut(s)	423, 497, 901
BmiI	GGNNCC	2 cut(s)	902, 1188
BmrFI	CCNGG	3 cut(s)	55, 66, 303
BmsI	GCATC	4 cut(s)	176, 186, 276, 758
BmtI	GCTAGC	1 cut(s)	159
BpmI	CTGGAG	3 cut(s)	684, 827, 1339
Bpu10I	CCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	2 cut(s)	1163, 1184
BpuMI	CCSGG	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	974
BsaBI	GATNNNNATC	1 cut(s)	723
BsaJI	CCNNGG	4 cut(s)	53, 65, 89, 438
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 444, 824, 875
Bse1I	ACTGG	3 cut(s)	23, 523, 667
Bse8I	GATNNNNATC	1 cut(s)	723
BseBI	CCWGG	2 cut(s)	55, 66
BseCI	ATCGAT	1 cut(s)	974
BseDI	CCNNGG	4 cut(s)	53, 65, 89, 438
BseGI	GGATG	3 cut(s)	291, 591, 1274
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	4 cut(s)	71, 444, 824, 875
BseMII	CTCAG	4 cut(s)	102, 109, 258, 1107
BseNI	ACTGG	3 cut(s)	23, 523, 667
BseRI	GAGGAG	2 cut(s)	128, 745
BseXI	GCAGC	3 cut(s)	27, 706, 1056
BseYI	CCCAGC	1 cut(s)	1172
BshFI	GGCC	4 cut(s)	425, 498, 903, 954
BshNI	GGYRCC	1 cut(s)	1186
BshVI	ATCGAT	1 cut(s)	974
BsiHKAI	GWGCWC	1 cut(s)	1006
BsiSI	CCGG	2 cut(s)	283, 303
BslFI	GGGAC	2 cut(s)	816, 832
BslI	CCNNNNNNNGG	4 cut(s)	71, 444, 824, 875
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	2 cut(s)	816, 832
BsmI	GAATGC	2 cut(s)	190, 522
BsnI	GGCC	4 cut(s)	425, 498, 903, 954
Bsp1286I	GDGCHC	1 cut(s)	1006
Bsp143I	GATC	8 cut(s)	74, 132, 379, 724, 814, 971, 975, 1037
Bsp19I	CCATGG	2 cut(s)	89, 438
BspACI	CCGC	3 cut(s)	255, 500, 851
BspANI	GGCC	4 cut(s)	425, 498, 903, 954
BspCNI	CTCAG	4 cut(s)	103, 108, 259, 1108
BspDI	ATCGAT	1 cut(s)	974
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	902, 1188
BspMAI	CTGCAG	3 cut(s)	45, 696, 765
BspMI	ACCTGC	1 cut(s)	768
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	82, 127, 809
BspT107I	GGYRCC	1 cut(s)	1186
BsrI	ACTGG	3 cut(s)	23, 523, 667
BssECI	CCNNGG	4 cut(s)	53, 65, 89, 438
BssMI	GATC	8 cut(s)	74, 132, 379, 724, 814, 971, 975, 1037
BssT1I	CCWWGG	2 cut(s)	89, 438
Bst2UI	CCWGG	2 cut(s)	55, 66
Bst4CI	ACNGT	1 cut(s)	1030
BstC8I	GCNNGC	6 cut(s)	157, 219, 500, 623, 1215, 1286
BstDEI	CTNAG	6 cut(s)	95, 111, 267, 753, 1018, 1116
BstDSI	CCRYGG	2 cut(s)	89, 438
BstEII	GGTNACC	1 cut(s)	18
BstENI	CCTNNNNNAGG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	291, 591, 1274
BstH2I	RGCGCY	2 cut(s)	41, 320
BstHHI	GCGC	2 cut(s)	40, 319
BstKTI	GATC	8 cut(s)	77, 135, 382, 727, 817, 974, 978, 1040
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	8 cut(s)	74, 132, 379, 724, 814, 971, 975, 1037
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 307, 316, 1138
BstNI	CCWGG	2 cut(s)	55, 66
BstNSI	RCATGY	1 cut(s)	1107
BstPI	GGTNACC	1 cut(s)	18
BstSCI	CCNGG	3 cut(s)	53, 64, 301
BstSFI	CTRYAG	5 cut(s)	41, 612, 692, 761, 1026
BstV1I	GCAGC	3 cut(s)	27, 706, 1056
BstX2I	RGATCY	2 cut(s)	74, 814
BstYI	RGATCY	2 cut(s)	74, 814
Bsu15I	ATCGAT	1 cut(s)	974
BsuRI	GGCC	4 cut(s)	425, 498, 903, 954
BsuTUI	ATCGAT	1 cut(s)	974
BtgI	CCRYGG	2 cut(s)	89, 438
BtsCI	GGATG	3 cut(s)	291, 591, 1274
BtsIMutI	CAGTG	1 cut(s)	264
BveI	ACCTGC	1 cut(s)	768
Cac8I	GCNNGC	6 cut(s)	157, 219, 500, 623, 1215, 1286
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	2 cut(s)	40, 319
Cfr13I	GGNCC	3 cut(s)	423, 497, 901
ClaI	ATCGAT	1 cut(s)	974
Csp6I	GTAC	1 cut(s)	1246
CviAII	CATG	7 cut(s)	90, 161, 439, 527, 979, 1104, 1133
CviQI	GTAC	1 cut(s)	1246
DdeI	CTNAG	6 cut(s)	95, 111, 267, 753, 1018, 1116
DpnI	GATC	8 cut(s)	76, 134, 381, 726, 816, 973, 977, 1039
DpnII	GATC	8 cut(s)	74, 132, 379, 724, 814, 971, 975, 1037
EaeI	YGGCCR	1 cut(s)	952
Eco130I	CCWWGG	2 cut(s)	89, 438
Eco32I	GATATC	1 cut(s)	640
Eco47III	AGCGCT	2 cut(s)	39, 318
Eco57I	CTGAAG	1 cut(s)	513
Eco91I	GGTNACC	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	901
EcoO65I	GGTNACC	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	53, 64
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	2 cut(s)	89, 438
ErhI	CCWWGG	2 cut(s)	89, 438
FaeI	CATG	7 cut(s)	93, 164, 442, 530, 982, 1107, 1136
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	2 cut(s)	816, 832
FatI	CATG	7 cut(s)	89, 160, 438, 526, 978, 1103, 1132
FauI	CCCGC	2 cut(s)	507, 858
FauNDI	CATATG	2 cut(s)	406, 777
FbaI	TGATCA	1 cut(s)	724
FblI	GTMKAC	1 cut(s)	1025
Fnu4HI	GCNGC	4 cut(s)	41, 255, 695, 1070
FokI	GGATG	3 cut(s)	298, 578, 1281
Fsp4HI	GCNGC	4 cut(s)	41, 255, 695, 1070
FspBI	CTAG	2 cut(s)	156, 626
GlaI	GCGC	2 cut(s)	39, 318
GluI	GCNGC	4 cut(s)	41, 255, 695, 1070
GsaI	CCCAGC	1 cut(s)	1176
GsuI	CTGGAG	3 cut(s)	684, 827, 1339
HaeII	RGCGCY	2 cut(s)	41, 320
HaeIII	GGCC	4 cut(s)	425, 498, 903, 954
HapII	CCGG	2 cut(s)	283, 303
HhaI	GCGC	2 cut(s)	40, 319
Hin1II	CATG	7 cut(s)	93, 164, 442, 530, 982, 1107, 1136
Hin6I	GCGC	2 cut(s)	38, 317
HinP1I	GCGC	2 cut(s)	38, 317
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HindIII	AAGCTT	1 cut(s)	1139
HinfI	GANTC	4 cut(s)	236, 469, 836, 1022
HpaII	CCGG	2 cut(s)	283, 303
HphI	GGTGA	5 cut(s)	12, 78, 245, 858, 1032
Hpy166II	GTNNAC	2 cut(s)	567, 1026
Hpy188I	TCNGA	6 cut(s)	112, 349, 468, 474, 588, 729
Hpy188III	TCNNGA	6 cut(s)	181, 227, 527, 658, 833, 1035
Hpy8I	GTNNAC	2 cut(s)	567, 1026
HpyAV	CCTTC	4 cut(s)	437, 488, 569, 1103
HpyCH4III	ACNGT	1 cut(s)	1030
HpyCH4IV	ACGT	1 cut(s)	476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 307, 316, 1138
HpyF3I	CTNAG	6 cut(s)	95, 111, 267, 753, 1018, 1116
HpySE526I	ACGT	1 cut(s)	476
Hsp92II	CATG	7 cut(s)	93, 164, 442, 530, 982, 1107, 1136
HspAI	GCGC	2 cut(s)	38, 317
Ksp22I	TGATCA	1 cut(s)	724
Kzo9I	GATC	8 cut(s)	74, 132, 379, 724, 814, 971, 975, 1037
LmnI	GCTCC	5 cut(s)	100, 689, 1001, 1048, 1222
Lsp1109I	GCAGC	3 cut(s)	27, 706, 1056
LweI	GCATC	4 cut(s)	176, 186, 276, 758
MaeI	CTAG	2 cut(s)	156, 626
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	3 cut(s)	18, 25, 412
MalI	GATC	8 cut(s)	76, 134, 381, 726, 816, 973, 977, 1039
MboI	GATC	8 cut(s)	74, 132, 379, 724, 814, 971, 975, 1037
MboII	GAAGA	3 cut(s)	362, 463, 584
MflI	RGATCY	2 cut(s)	74, 814
MhlI	GDGCHC	1 cut(s)	1006
MlsI	TGGCCA	1 cut(s)	954
MluCI	AATT	4 cut(s)	322, 354, 513, 819
MluNI	TGGCCA	1 cut(s)	954
MlyI	GAGTC	1 cut(s)	1031
Mox20I	TGGCCA	1 cut(s)	954
MroXI	GAANNNNTTC	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	954
MseI	TTAA	8 cut(s)	291, 321, 462, 479, 822, 887, 1157, 1254
Msp20I	TGGCCA	1 cut(s)	954
MspI	CCGG	2 cut(s)	283, 303
MspR9I	CCNGG	3 cut(s)	55, 66, 303
Mva1269I	GAATGC	2 cut(s)	190, 522
MvaI	CCWGG	2 cut(s)	55, 66
MwoI	GCNNNNNNNGC	4 cut(s)	100, 307, 316, 1138
NciI	CCSGG	1 cut(s)	303
NcoI	CCATGG	2 cut(s)	89, 438
NdeI	CATATG	2 cut(s)	406, 777
NdeII	GATC	8 cut(s)	74, 132, 379, 724, 814, 971, 975, 1037
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	7 cut(s)	93, 164, 442, 530, 982, 1107, 1136
NlaIV	GGNNCC	2 cut(s)	902, 1188
NmuCI	GTSAC	2 cut(s)	18, 412
NspI	RCATGY	1 cut(s)	1107
PagI	TCATGA	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PctI	GAATGC	2 cut(s)	190, 522
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	3 cut(s)	236, 469, 836
PkrI	GCNGC	4 cut(s)	42, 256, 696, 1071
PleI	GAGTC	1 cut(s)	1030
PpsI	GAGTC	1 cut(s)	1030
PshBI	ATTAAT	1 cut(s)	462
Psp6I	CCWGG	2 cut(s)	53, 64
PspEI	GGTNACC	1 cut(s)	18
PspFI	CCCAGC	1 cut(s)	1172
PspGI	CCWGG	2 cut(s)	53, 64
PspN4I	GGNNCC	2 cut(s)	902, 1188
PspPI	GGNCC	3 cut(s)	423, 497, 901
PstI	CTGCAG	3 cut(s)	45, 696, 765
PsuI	RGATCY	2 cut(s)	74, 814
RsaI	GTAC	1 cut(s)	1247
RsaNI	GTAC	1 cut(s)	1246
SaqAI	TTAA	8 cut(s)	291, 321, 462, 479, 822, 887, 1157, 1254
SatI	GCNGC	4 cut(s)	41, 255, 695, 1070
Sau3AI	GATC	8 cut(s)	74, 132, 379, 724, 814, 971, 975, 1037
Sau96I	GGNCC	3 cut(s)	423, 497, 901
SchI	GAGTC	1 cut(s)	1031
ScrFI	CCNGG	3 cut(s)	55, 66, 303
SduI	GDGCHC	1 cut(s)	1006
SfaNI	GCATC	4 cut(s)	176, 186, 276, 758
SfcI	CTRYAG	5 cut(s)	41, 612, 692, 761, 1026
SmlI	CTYRAG	2 cut(s)	1142, 1163
SmoI	CTYRAG	2 cut(s)	1142, 1163
Sse9I	AATT	4 cut(s)	322, 354, 513, 819
SsiI	CCGC	3 cut(s)	255, 500, 851
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	2 cut(s)	156, 626
StyD4I	CCNGG	3 cut(s)	53, 64, 301
StyI	CCWWGG	2 cut(s)	89, 438
TaaI	ACNGT	1 cut(s)	1030
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	6 cut(s)	180, 642, 974, 1034, 1077, 1307
TasI	AATT	4 cut(s)	322, 354, 513, 819
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	236, 469, 836
Tru1I	TTAA	8 cut(s)	291, 321, 462, 479, 822, 887, 1157, 1254
Tru9I	TTAA	8 cut(s)	291, 321, 462, 479, 822, 887, 1157, 1254
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	18, 412
TseI	GCWGC	3 cut(s)	40, 694, 1069
Tsp45I	GTSAC	2 cut(s)	18, 412
TspDTI	ATGAA	4 cut(s)	21, 515, 543, 794
TspGWI	ACGGA	3 cut(s)	1139, 1218, 1235
TspRI	CASTG	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	462
XagI	CCTNNNNNAGG	1 cut(s)	69
XapI	RAATTY	1 cut(s)	354
XceI	RCATGY	1 cut(s)	1107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	1025
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	156, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.