Prupe.4G258200_v2.0.a1

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
18325403 .. 18326818
1416 bp
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UTR
Exon/CDS
Intron
Prupe.4G258200.1

Sequence Viewer

Length: 1416 bp
ATGTTCCAAGACGAAGGGTCATCATCTGCAACTTCATCTCCTCTCCAATTCTTTTCCATGATGTCACTTTCGCCTAGTTTAGGATCACCACACCCATGGCTTAAAGAGCTAAAATCCGAGGAGCGGGGTTTGTATTTGATCCACTTGTTGCTCACTTGTGCAAATCATGTTGCCACGGGAAGCCTTGAAAATGCAAATGTTGCCCTTGAGCAAATTTCCCAACTCGCCTCTGCTGATGGTGATACCATGCAGCGGATTGCTGCATACTTCACAGAGGCTCTTGCTGATCGAATCCTCAAAGCTTGGCCTGGTCTTCACAGGGCCCTTAATTCCACTAAAATATCCTTGGTTTCTGAAGAATTTCTAGTTCGGAAAGTGTTTTTTGAGATGTTGCCATTCCTAAAGGTGGCTTTTGTGCTTGCAAACCAAGCTATTACTGAAGCCATGGAAGGGGAAAAGATGGTCCATGTAATTGATCTCAATGCAGCTGAACCTGCACAATGGATTGCTCTTCTTCAAGTTTTAAGTGCAAGGCCTGAAGGTCCACCTCATTTGAGAATTACTGGTGTTCATCAACAGAAAGAGGTGCTAGATCAAATGGCTCATAGGTTGACTGAGGAAGCAGAAAAACTGGATATCCCATTTCAGTTCTGTCCCATAGTCAGCAAATTGGAAAATCTTGATATGGAAAAACTTCGCATCAAAACTGGTGAGGCTCTAGCTATCAGCTCAGTTCTTCAGTTGCACTCCCTTTTGGCGTCTGATGATGAACTCTTGAAAAAGAAATCCCCATTAGCGTCAAAGAGTTCAAGTGGAATTCCCTTACCAAGAGTATTGCAAATGAACCAAGGCACCCTGGGTGAGTTGCTAGAGAAAGAGATGGGCAACGGGTATGGTGCGAGTCCTGACTCAACCTCGTCATCGCCACTATCTTTGACTGCTTCGATGAAGTTGGATAGCTTTCTTAATGCATTTTGGAGCTTGACACCAAAGGTCATGGTAATAGCCGAACAAGATTCTAACCATAATGGCTCCACTCTAATGGAGAGGCTATTGGAAGCTCTGTACTCATATGCTGCATTGTTTGATTGCTTGGAGTCTACAATGTCGAGAAATTCAATAGAGAGACTGAAGGTGGAGAAGATGCTCTTTGGGGAGGAAATAAAAAACATTATAGCTTGTGAGGGATGTGAGAGGAAGGAAAGACACGAAAAGCTTGAGAAGTGGATTCAAAGGCTTGATTTAGCTGGGTTTGGAAATGTACCTTTGAGCTATTATGGAATGCTGCAGGCAAAGAGGTTGTTGCAGGGCTACGGTTGCGATGGGTATAGAATGAGGGAAGAGAATGGTTGTGTGTTGATTTCCTGGCAGGATCGACCCCTATTTTCTGTCTCAGCTTGGAGGTGCAGGAAGTAG

Protein Analysis

472

Amino Acids

52.58

Weight (kDa)

5.76

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 851
AccBSI CCGCTC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 1100
AciI CCGC 2 cut(s) 124, 253
AclWI GGATC 3 cut(s) 91, 133, 1380
AcsI RAATTY 4 cut(s) 213, 359, 816, 1114
AcuI CTGAAG 5 cut(s) 375, 459, 558, 722, 1151
AcyI GRCGYC 1 cut(s) 758
AfaI GTAC 2 cut(s) 1067, 1263
AfiI CCNNNNNNNGG 5 cut(s) 80, 123, 252, 406, 450
AgsI TTSAA 6 cut(s) 188, 518, 778, 810, 1119, 1232
AhdI GACNNNNNGTC 1 cut(s) 16
AjnI CCWGG 3 cut(s) 307, 855, 1364
Alw26I GTCTC 2 cut(s) 1120, 1396
AlwI GGATC 3 cut(s) 91, 133, 1380
AoxI GGCC 3 cut(s) 305, 321, 533
ApaI GGGCCC 1 cut(s) 325
ApeKI GCWGC 5 cut(s) 250, 260, 485, 1076, 1285
ApoI RAATTY 4 cut(s) 213, 359, 816, 1114
Asp700I GAANNNNTTC 2 cut(s) 360, 693
AspS9I GGNCC 4 cut(s) 321, 322, 463, 542
AsuHPI GGTGA 4 cut(s) 78, 251, 722, 872
AvaII GGWCC 2 cut(s) 463, 542
BaeGI GKGCMC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 851
BanII GRGCYC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 305
BbvI GCAGC 5 cut(s) 247, 262, 497, 1063, 1272
BccI CCATC 4 cut(s) 230, 454, 874, 1316
BciT130I CCWGG 3 cut(s) 309, 857, 1366
BcoDI GTCTC 2 cut(s) 1120, 1396
BfaI CTAG 5 cut(s) 75, 365, 590, 719, 869
BfmI CTRYAG 1 cut(s) 1286
BfuAI ACCTGC 1 cut(s) 502
BisI GCNGC 5 cut(s) 251, 261, 486, 1077, 1286
BlsI GCNGC 5 cut(s) 252, 262, 487, 1078, 1287
Bme1390I CCNGG 3 cut(s) 309, 857, 1366
Bme18I GGWCC 2 cut(s) 463, 542
BmeRI GACNNNNNGTC 1 cut(s) 16
BmgT120I GGNCC 4 cut(s) 321, 322, 463, 542
BmiI GGNNCC 3 cut(s) 323, 853, 1033
BmrFI CCNGG 3 cut(s) 309, 857, 1366
BmsI GCATC 2 cut(s) 708, 1134
BpiI GAAGAC 1 cut(s) 305
BpuEI CTTGAG 2 cut(s) 227, 1238
BsaHI GRCGYC 1 cut(s) 758
BsaJI CCNNGG 8 cut(s) 95, 117, 174, 345, 444, 847, 855, 856
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 123, 252, 406, 450
Bse1I ACTGG 3 cut(s) 568, 636, 712
BseBI CCWGG 3 cut(s) 309, 857, 1366
BseDI CCNNGG 8 cut(s) 95, 117, 174, 345, 444, 847, 855, 856
BseGI GGATG 1 cut(s) 1193
BseLI CCNNNNNNNGG 5 cut(s) 80, 123, 252, 406, 450
BseMII CTCAG 3 cut(s) 606, 744, 1407
BseNI ACTGG 3 cut(s) 568, 636, 712
BseRI GAGGAG 2 cut(s) 30, 134
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 5 cut(s) 247, 262, 497, 1063, 1272
BseYI CCCAGC 1 cut(s) 1247
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 3 cut(s) 307, 323, 535
BshNI GGYRCC 1 cut(s) 851
BslFI GGGAC 1 cut(s) 639
BslI CCNNNNNNNGG 5 cut(s) 80, 123, 252, 406, 450
BsmAI GTCTC 2 cut(s) 1120, 1396
BsmFI GGGAC 1 cut(s) 639
BsmI GAATGC 1 cut(s) 1287
BsnI GGCC 3 cut(s) 307, 323, 535
Bsp120I GGGCCC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 6 cut(s) 83, 138, 286, 475, 592, 1372
Bsp19I CCATGG 2 cut(s) 95, 444
BspACI CCGC 2 cut(s) 124, 253
BspANI GGCC 3 cut(s) 307, 323, 535
BspCNI CTCAG 3 cut(s) 607, 743, 1406
BspLI GGNNCC 3 cut(s) 323, 853, 1033
BspMAI CTGCAG 1 cut(s) 1290
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 3 cut(s) 91, 133, 1380
BspQI GCTCTTC 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 851
BsrBI CCGCTC 1 cut(s) 124
BsrI ACTGG 3 cut(s) 568, 636, 712
BssECI CCNNGG 8 cut(s) 95, 117, 174, 345, 444, 847, 855, 856
BssMI GATC 6 cut(s) 83, 138, 286, 475, 592, 1372
BssNI GRCGYC 1 cut(s) 758
BssT1I CCWWGG 4 cut(s) 95, 345, 444, 847
Bst2UI CCWGG 3 cut(s) 309, 857, 1366
Bst4CI ACNGT 1 cut(s) 1316
Bst6I CTCTTC 2 cut(s) 516, 1335
BstACI GRCGYC 1 cut(s) 758
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 420, 1290
BstDEI CTNAG 3 cut(s) 615, 730, 1393
BstDSI CCRYGG 3 cut(s) 95, 174, 444
BstENI CCTNNNNNAGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 1193
BstKTI GATC 6 cut(s) 86, 141, 289, 478, 595, 1375
BstMAI GTCTC 2 cut(s) 1120, 1396
BstMBI GATC 6 cut(s) 83, 138, 286, 475, 592, 1372
BstMWI GCNNNNNNNGC 5 cut(s) 106, 200, 428, 494, 1317
BstNI CCWGG 3 cut(s) 309, 857, 1366
BstSCI CCNGG 3 cut(s) 307, 855, 1364
BstSFI CTRYAG 1 cut(s) 1286
BstSLI GKGCMC 1 cut(s) 325
BstV1I GCAGC 5 cut(s) 247, 262, 497, 1063, 1272
BstV2I GAAGAC 1 cut(s) 305
BstXI CCANNNNNNTGG 2 cut(s) 96, 1042
BsuRI GGCC 3 cut(s) 307, 323, 535
BtgI CCRYGG 3 cut(s) 95, 174, 444
BtgZI GCGATG 2 cut(s) 906, 1335
BtsCI GGATG 1 cut(s) 1193
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 420, 1290
Cfr13I GGNCC 4 cut(s) 321, 322, 463, 542
CseI GACGC 2 cut(s) 747, 786
Csp6I GTAC 2 cut(s) 1066, 1262
CspCI CAANNNNNGTGG 4 cut(s) 534, 569, 915, 950
CviAII CATG 7 cut(s) 58, 96, 167, 247, 445, 467, 997
CviQI GTAC 2 cut(s) 1066, 1262
DdeI CTNAG 3 cut(s) 615, 730, 1393
DpnI GATC 6 cut(s) 85, 140, 288, 477, 594, 1374
DpnII GATC 6 cut(s) 83, 138, 286, 475, 592, 1372
DriI GACNNNNNGTC 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 516, 1335
Eam1105I GACNNNNNGTC 1 cut(s) 16
EarI CTCTTC 2 cut(s) 516, 1335
Eco130I CCWWGG 4 cut(s) 95, 345, 444, 847
Eco147I AGGCCT 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 325
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 2 cut(s) 463, 542
Eco57I CTGAAG 5 cut(s) 375, 459, 558, 722, 1151
EcoNI CCTNNNNNAGG 1 cut(s) 78
EcoO109I RGGNCCY 2 cut(s) 321, 322
EcoRI GAATTC 1 cut(s) 816
EcoRII CCWGG 3 cut(s) 307, 855, 1364
EcoRV GATATC 1 cut(s) 637
EcoT14I CCWWGG 4 cut(s) 95, 345, 444, 847
EcoT22I ATGCAT 1 cut(s) 973
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 4 cut(s) 95, 345, 444, 847
FaeI CATG 7 cut(s) 61, 99, 170, 250, 448, 470, 1000
FalI AAGNNNNNCTT 2 cut(s) 1133, 1165
FaqI GGGAC 1 cut(s) 639
FatI CATG 7 cut(s) 57, 95, 166, 246, 444, 466, 996
FauI CCCGC 1 cut(s) 117
FauNDI CATATG 1 cut(s) 1072
FblI GTMKAC 1 cut(s) 1100
Fnu4HI GCNGC 5 cut(s) 251, 261, 486, 1077, 1286
FokI GGATG 1 cut(s) 1200
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 5 cut(s) 251, 261, 486, 1077, 1286
FspBI CTAG 5 cut(s) 75, 365, 590, 719, 869
GluI GCNGC 5 cut(s) 251, 261, 486, 1077, 1286
GsaI CCCAGC 1 cut(s) 1251
HaeIII GGCC 3 cut(s) 307, 323, 535
HgaI GACGC 2 cut(s) 747, 786
Hin1I GRCGYC 1 cut(s) 758
Hin1II CATG 7 cut(s) 61, 99, 170, 250, 448, 470, 1000
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 2 cut(s) 300, 1214
HinfI GANTC 6 cut(s) 291, 901, 908, 1016, 1097, 1228
HphI GGTGA 4 cut(s) 78, 251, 722, 872
Hpy166II GTNNAC 3 cut(s) 545, 612, 1101
Hpy188I TCNGA 4 cut(s) 118, 355, 372, 763
Hpy188III TCNNGA 4 cut(s) 680, 775, 905, 1110
Hpy8I GTNNAC 3 cut(s) 545, 612, 1101
HpyAV CCTTC 5 cut(s) 8, 443, 533, 1126, 1192
HpyCH4III ACNGT 1 cut(s) 1316
HpyF10VI GCNNNNNNNGC 5 cut(s) 106, 200, 428, 494, 1317
HpyF3I CTNAG 3 cut(s) 615, 730, 1393
Hsp92I GRCGYC 1 cut(s) 758
Hsp92II CATG 7 cut(s) 61, 99, 170, 250, 448, 470, 1000
Kzo9I GATC 6 cut(s) 83, 138, 286, 475, 592, 1372
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 3 cut(s) 121, 978, 1037
Lsp1109I GCAGC 5 cut(s) 247, 262, 497, 1063, 1272
LweI GCATC 2 cut(s) 708, 1134
MaeI CTAG 5 cut(s) 75, 365, 590, 719, 869
MaeIII GTNAC 1 cut(s) 63
MalI GATC 6 cut(s) 85, 140, 288, 477, 594, 1374
MbiI CCGCTC 1 cut(s) 124
MboI GATC 6 cut(s) 83, 138, 286, 475, 592, 1372
MboII GAAGA 7 cut(s) 305, 368, 503, 506, 728, 1153, 1352
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 9 cut(s) 47, 213, 328, 359, 471, 558, 668, 816, 1114
MlyI GAGTC 3 cut(s) 902, 910, 1106
MmeI TCCRAC 1 cut(s) 933
Mph1103I ATGCAT 1 cut(s) 973
MroXI GAANNNNTTC 2 cut(s) 360, 693
MseI TTAA 4 cut(s) 102, 327, 524, 966
MslI CAYNNNNRTG 2 cut(s) 94, 1040
MspA1I CMGCKG 2 cut(s) 253, 488
MspR9I CCNGG 3 cut(s) 309, 857, 1366
Mva1269I GAATGC 1 cut(s) 1287
MvaI CCWGG 3 cut(s) 309, 857, 1366
MwoI GCNNNNNNNGC 5 cut(s) 106, 200, 428, 494, 1317
NcoI CCATGG 2 cut(s) 95, 444
NdeI CATATG 1 cut(s) 1072
NdeII GATC 6 cut(s) 83, 138, 286, 475, 592, 1372
NlaIII CATG 7 cut(s) 61, 99, 170, 250, 448, 470, 1000
NlaIV GGNNCC 3 cut(s) 323, 853, 1033
NmuCI GTSAC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 973
PasI CCCWGGG 1 cut(s) 856
PceI AGGCCT 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 516
PctI GAATGC 1 cut(s) 1287
PdmI GAANNNNTTC 2 cut(s) 360, 693
PfeI GAWTC 3 cut(s) 291, 1016, 1228
PkrI GCNGC 5 cut(s) 252, 262, 487, 1078, 1287
PleI GAGTC 3 cut(s) 902, 909, 1105
PpsI GAGTC 3 cut(s) 902, 909, 1105
Psp6I CCWGG 3 cut(s) 307, 855, 1364
PspFI CCCAGC 1 cut(s) 1247
PspGI CCWGG 3 cut(s) 307, 855, 1364
PspN4I GGNNCC 3 cut(s) 323, 853, 1033
PspOMI GGGCCC 1 cut(s) 321
PspPI GGNCC 4 cut(s) 321, 322, 463, 542
PstI CTGCAG 1 cut(s) 1290
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 2 cut(s) 1067, 1263
RsaNI GTAC 2 cut(s) 1066, 1262
RseI CAYNNNNRTG 2 cut(s) 94, 1040
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 4 cut(s) 102, 327, 524, 966
SatI GCNGC 5 cut(s) 251, 261, 486, 1077, 1286
Sau3AI GATC 6 cut(s) 83, 138, 286, 475, 592, 1372
Sau96I GGNCC 4 cut(s) 321, 322, 463, 542
SchI GAGTC 3 cut(s) 902, 910, 1106
ScrFI CCNGG 3 cut(s) 309, 857, 1366
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 2 cut(s) 708, 1134
SfcI CTRYAG 1 cut(s) 1286
SinI GGWCC 2 cut(s) 463, 542
SmiMI CAYNNNNRTG 2 cut(s) 94, 1040
SmlI CTYRAG 2 cut(s) 206, 1217
SmoI CTYRAG 2 cut(s) 206, 1217
Sse9I AATT 9 cut(s) 47, 213, 328, 359, 471, 558, 668, 816, 1114
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 2 cut(s) 124, 253
SspMI CTAG 5 cut(s) 75, 365, 590, 719, 869
StuI AGGCCT 1 cut(s) 535
StyD4I CCNGG 3 cut(s) 307, 855, 1364
StyI CCWWGG 4 cut(s) 95, 345, 444, 847
TaaI ACNGT 1 cut(s) 1316
TaqI TCGA 4 cut(s) 289, 944, 1109, 1375
TasI AATT 9 cut(s) 47, 213, 328, 359, 471, 558, 668, 816, 1114
TatI WGTACW 1 cut(s) 1065
TfiI GAWTC 3 cut(s) 291, 1016, 1228
Tru1I TTAA 4 cut(s) 102, 327, 524, 966
Tru9I TTAA 4 cut(s) 102, 327, 524, 966
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 5 cut(s) 250, 260, 485, 1076, 1285
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 5 cut(s) 24, 560, 783, 857, 962
VpaK11BI GGWCC 2 cut(s) 463, 542
XagI CCTNNNNNAGG 1 cut(s) 78
XapI RAATTY 4 cut(s) 213, 359, 816, 1114
XmiI GTMKAC 1 cut(s) 1100
XmnI GAANNNNTTC 2 cut(s) 360, 693
XspI CTAG 5 cut(s) 75, 365, 590, 719, 869
Zsp2I ATGCAT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.