Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002137

Physical Location & Seq

Genomic Coordinates Forward (+)

4900571 .. 4903171

Gene Structure 2601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0029000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTCGTTCAGTACCAGTGCCCGCCTTTTTCCAGGACCTTGTTGGTGATTTCTCTGAGAAACTGAAAATGCCAACAGCTTTTGTCAACCACTTCAATGGATCAGCACTTTGCAAACTTCGAGGCCCTAGTGGAAAGTGCTGGGATGTAATATTGGAAGAGGAAAATAATGATATTTTCTTCCATAAAGGCTGGAATAAATTTGTGAAGGATAATTTTTTGGAGGAAGGACACATTTTGGTTTTCAATTATGATGGCAATTCTTGGTTCAATGTGACAATCTATGATAAAAGTGCAAGTGAAATGGACATGGAAGCAGCCAAGATAAGGAGAAGTACTGGTGATCTTGATGGTCAAGGGAGGGATTATGTCATGCCTGGGGAGACAAGATTCAGAATCATTGAGTTCAAATCAGAGCATCTTTGCTTTAAGAGAACTATGGAGAAGCACAGACTGTATCAGCTGACCATTCCTATAATAATAGTCAGGGCTAAGGGGCTCATAAGCAAGCGGACTATAGAGCTTCGGGATCCAAGCAACAGATCATGGCCTGTTAAAGTGACTCGCGTGGAAGATGGTCGTTTACTTATGAACAGAGGCTGGCGTGCTTGTAGCAAGTGGAACCAGATTAAGAAAGGGCACACCATTGTTTTTGAGTTTGTGAAGGGACATGTGAAGCTTCACATCGTTAGAGCTGAGGGGTGTGATGTGATACTCACAGGTCCTAATGTCGTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

246

Amino Acids

28.42

Weight (kDa)

9.16

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	20 - 97	2.1e-14	B3 DNA binding domain
B3	PF02362	149 - 230	3.6e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50420
fragaria_vesca	FvH4_7g02290 FvH4_7g02290
malus_domestica	MD02G1295800.v1.1 MD07G1030000.v1.1 MD11G1196300.v1.1
prunus_persica	Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.4G258200_v2.0.a1
pyrus_communis	pycom02g24850 pycom03g12560 pycom07g02200 pycom11g16370
rosa_chinensis	RchiOBHm_Chr1g0319641 RchiOBHm_Chr5g0050921
rosa_laevigata	RLG00000030469 RLG00000034747
rosa_multiflora	Rmu_sc0002539.1_g000095 Rmu_sc0004572.1_g000002 Rmu_sc0017334.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029800
rosa_rugosa	Rorug01G0028900 Rorug01G0029000 Rorug01G0029100 Rorug05G0293900
rosa_samantha	Rh1AG040700 Rh1BG037900 Rh1CG041800 Rh1DG028100 Rh5AG337000 Rh5BG346600 Rh5DG359600
rosa_wichuraiana	Rw0G019990 Rw1G003380 Rw5G031800 Rw5G031860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	567
AciI	CCGC	2 cut(s)	24, 511
AclWI	GGATC	3 cut(s)	109, 524, 537
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	2 cut(s)	15, 337
AfiI	CCNNNNNNNGG	1 cut(s)	327
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	4 cut(s)	97, 247, 271, 409
AjnI	CCWGG	2 cut(s)	33, 376
AluBI	AGCT	5 cut(s)	80, 463, 523, 679, 695
AluI	AGCT	5 cut(s)	80, 463, 523, 679, 695
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	3 cut(s)	109, 524, 537
AlwNI	CAGNNNCTG	1 cut(s)	600
AoxI	GGCC	2 cut(s)	124, 548
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	37, 125, 722
AsuHPI	GGTGA	2 cut(s)	59, 353
AvaII	GGWCC	2 cut(s)	37, 722
BaeGI	GKGCMC	2 cut(s)	24, 642
BamHI	GGATCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	501
BbvCI	CCTCAGC	1 cut(s)	696
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	3 cut(s)	248, 344, 569
BciT130I	CCWGG	2 cut(s)	35, 378
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
BmcAI	AGTACT	1 cut(s)	337
Bme1390I	CCNGG	2 cut(s)	35, 378
Bme18I	GGWCC	2 cut(s)	37, 722
BmgT120I	GGNCC	3 cut(s)	37, 125, 722
BmiI	GGNNCC	2 cut(s)	531, 623
BmrFI	CCNGG	2 cut(s)	35, 378
BmsI	GCATC	1 cut(s)	427
Bpu10I	CCTNAGC	2 cut(s)	492, 696
BsaJI	CCNNGG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	2 cut(s)	17, 343
BseBI	CCWGG	2 cut(s)	35, 378
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	48, 687
BseNI	ACTGG	2 cut(s)	17, 343
BseSI	GKGCMC	2 cut(s)	24, 642
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	126, 550
BslFI	GGGAC	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	126, 550
Bsp1286I	GDGCHC	3 cut(s)	24, 501, 642
Bsp143I	GATC	4 cut(s)	101, 343, 529, 542
BspACI	CCGC	2 cut(s)	24, 511
BspANI	GGCC	2 cut(s)	126, 550
BspCNI	CTCAG	2 cut(s)	49, 688
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	2 cut(s)	531, 623
BspPI	GGATC	3 cut(s)	109, 524, 537
BsrI	ACTGG	2 cut(s)	17, 343
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	4 cut(s)	101, 343, 529, 542
Bst2UI	CCWGG	2 cut(s)	35, 378
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	153
BstC8I	GCNNGC	4 cut(s)	24, 509, 602, 606
BstDEI	CTNAG	3 cut(s)	57, 492, 696
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	567
BstKTI	GATC	4 cut(s)	104, 346, 532, 545
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	4 cut(s)	101, 343, 529, 542
BstNI	CCWGG	2 cut(s)	35, 378
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	2 cut(s)	33, 376
BstSFI	CTRYAG	1 cut(s)	516
BstSLI	GKGCMC	2 cut(s)	24, 642
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	329
BstX2I	RGATCY	1 cut(s)	529
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	529
BsuRI	GGCC	2 cut(s)	126, 550
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	4 cut(s)	24, 509, 602, 606
CaiI	CAGNNNCTG	1 cut(s)	600
Cfr13I	GGNCC	3 cut(s)	37, 125, 722
Csp6I	GTAC	2 cut(s)	14, 336
CviAII	CATG	4 cut(s)	310, 373, 546, 671
CviQI	GTAC	2 cut(s)	14, 336
DdeI	CTNAG	3 cut(s)	57, 492, 696
DpnI	GATC	4 cut(s)	103, 345, 531, 544
DpnII	GATC	4 cut(s)	101, 343, 529, 542
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	501
Eco47I	GGWCC	2 cut(s)	37, 722
EcoO109I	RGGNCCY	3 cut(s)	37, 125, 722
EcoRII	CCWGG	2 cut(s)	33, 376
EcoT38I	GRGCYC	1 cut(s)	501
FaeI	CATG	4 cut(s)	313, 376, 549, 674
FaqI	GGGAC	1 cut(s)	681
FatI	CATG	4 cut(s)	309, 372, 545, 670
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	318
GsaI	CCCAGC	1 cut(s)	145
HaeIII	GGCC	2 cut(s)	126, 550
Hin1II	CATG	4 cut(s)	313, 376, 549, 674
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	3 cut(s)	390, 396, 562
HphI	GGTGA	2 cut(s)	59, 353
Hpy166II	GTNNAC	2 cut(s)	88, 584
Hpy188I	TCNGA	3 cut(s)	58, 395, 415
Hpy188III	TCNNGA	2 cut(s)	347, 527
Hpy8I	GTNNAC	2 cut(s)	88, 584
HpyAV	CCTTC	3 cut(s)	202, 221, 658
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4V	TGCA	2 cut(s)	114, 296
HpyF3I	CTNAG	3 cut(s)	57, 492, 696
Hsp92II	CATG	4 cut(s)	313, 376, 549, 674
Kzo9I	GATC	4 cut(s)	101, 343, 529, 542
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	274, 559
MalI	GATC	4 cut(s)	103, 345, 531, 544
MboI	GATC	4 cut(s)	101, 343, 529, 542
MboII	GAAGA	3 cut(s)	170, 172, 584
MflI	RGATCY	1 cut(s)	529
MhlI	GDGCHC	3 cut(s)	24, 501, 642
MluCI	AATT	4 cut(s)	200, 214, 247, 259
MlyI	GAGTC	1 cut(s)	556
MnlI	CCTC	6 cut(s)	116, 154, 217, 354, 590, 691
MseI	TTAA	3 cut(s)	429, 555, 630
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	463
MspR9I	CCNGG	2 cut(s)	35, 378
MvaI	CCWGG	2 cut(s)	35, 378
MvnI	CGCG	1 cut(s)	567
NdeII	GATC	4 cut(s)	101, 343, 529, 542
NlaIII	CATG	4 cut(s)	313, 376, 549, 674
NlaIV	GGNNCC	2 cut(s)	531, 623
NmuCI	GTSAC	2 cut(s)	274, 559
NspI	RCATGY	1 cut(s)	674
PciI	ACATGT	1 cut(s)	670
PfeI	GAWTC	2 cut(s)	390, 396
PfoI	TCCNGGA	1 cut(s)	33
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	1 cut(s)	556
PpsI	GAGTC	1 cut(s)	556
PpuMI	RGGWCCY	2 cut(s)	37, 722
PscI	ACATGT	1 cut(s)	670
Psp5II	RGGWCCY	2 cut(s)	37, 722
Psp6I	CCWGG	2 cut(s)	33, 376
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	2 cut(s)	33, 376
PspN4I	GGNNCC	2 cut(s)	531, 623
PspPI	GGNCC	3 cut(s)	37, 125, 722
PspPPI	RGGWCCY	2 cut(s)	37, 722
PstNI	CAGNNNCTG	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	2 cut(s)	15, 337
RsaNI	GTAC	2 cut(s)	14, 336
RseI	CAYNNNNRTG	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	429, 555, 630
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	4 cut(s)	101, 343, 529, 542
Sau96I	GGNCC	3 cut(s)	37, 125, 722
ScaI	AGTACT	1 cut(s)	337
SchI	GAGTC	1 cut(s)	556
ScrFI	CCNGG	2 cut(s)	35, 378
SduI	GDGCHC	3 cut(s)	24, 501, 642
SetI	ASST	7 cut(s)	42, 82, 465, 525, 681, 697, 724
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	2 cut(s)	37, 722
SmiMI	CAYNNNNRTG	1 cut(s)	96
Sse9I	AATT	4 cut(s)	200, 214, 247, 259
SsiI	CCGC	2 cut(s)	24, 511
SspI	AATATT	1 cut(s)	153
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	33, 376
TaaI	ACNGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	121
TasI	AATT	4 cut(s)	200, 214, 247, 259
TatI	WGTACW	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	390, 396
Tru1I	TTAA	3 cut(s)	429, 555, 630
Tru9I	TTAA	3 cut(s)	429, 555, 630
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	2 cut(s)	274, 559
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	2 cut(s)	274, 559
TspDTI	ATGAA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	24
VpaK11BI	GGWCC	2 cut(s)	37, 722
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41
XspI	CTAG	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.