RLG00000034747

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
53544599 .. 53546008
1410 bp
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UTR
Exon/CDS
Intron
RLM00000034747

Sequence Viewer

Length: 1410 bp
ATGTTCCACGATGAAGGGTCATCATCTGCAACTCAATCTCCTCTCCAATTCTTTACAAAGACGTCACCTAGTTTAGGATCACCATACCCTTGGCAAAGAGAACTTAAATCCGAGGAGCGGGGTCTGTGTTTGATCCACTTGTTGCTCACTTGTGCAAATTATGTTGCTGCGGGAAACCTCGAAAATGCAAATATTGCCCTTGAGCAAATCTCCCTGCTTGCCTCTTCGGATGGTGATACCATGCAGCGGATTGCAGCCTACTTCACTGAGGCTCTTGCTGACCGAATCCTCAAAGCTTGGCCTGGTCTTTATAAGGCCCTATATTCCACTAGAATATCTTCAGTTTCTGAAGAATTTCTAGTTCGGAAAGTGTTCTTTGAGATGCTTCCATTCCTAAAGGTGGCTTATGTGCTCACAAACCAAGCTATTATTGAAGCCATGGAAGAAGAGAAGGTGGTCCATATAATTGACCTTAATTCATCTGAACCTGCACAGTGGATAGCTCTTCTTCATGTTTTAAGTGCAAGGCCTGAGGGTCCACCTCATTTGAGAATTACCGGTGTCCATCAACAAAAAGAAGTACTAGATCAAATGGCTCATAGCTTGACTGAGGAAGCAGAAAAATTGGATACTCCATTTCAGTTCAATCCCGTAGTCAGCAAGTTGGAAACACTTGATTTTGAAAAGCTCCATGTTAAAACCGGTGAGGCTCTAGCTATCAGCTCAGTTCTCCAATTTCACTCCCTCTTGTCATCTGATGATGATTTCCATAGAAAGAAATTCTCATTGGAATCAAAGAATCCAAGTAGAGTTCACTCACCTGGAGTGTTGCAGATGGGCCAAGGCACATTGGGTGAGTTGCTAGAGAAAGATATGGGCAAGGGATATAGCCCCAGTCCTGACTCAACCTCGTCATCCCCACTATCCCCAGTTGGTTCTGTGAAGATGGACAGCTTTCTTAATGCATTTTGGGGTTTGACACCGAAGATCATGGTAGTTACCGAACAAGATTCCAACCATAATGGCTCCACTCTAATGGAGAGGCTATTCGAAGCTTTATACTCGTATGCTGCATTGTTTGATTGCTTGGACTCTACGATGTCAAGAACTTCATTGGAAAGAATGAAGGTAGAGAAAATGCTATTTGGGGAGGAAATTAAAAACATTATAGCTTGTGAGGGATCTGAGAGGAAAGAAAGACATGAAAAACTTGACAAGTGGATTCAAAGGCTCGATTTAGCTGGCTTTGGAAATGTACCTTTGAGCTATTATGGTATGCTTCAGGCAAGGAGGTTGTTGCAGGGTTATGGTTGTGATGGATATAGGATCAGGGAAGAGAATGGCTGTGTGTTGATGTCCTGGCAAGATCGACCCCTATTTTCTGTCTCAGCTTGGAGATGCAGGAAGTAG

Protein Analysis

470

Amino Acids

52.79

Weight (kDa)

5.7

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 44 - 466 4.6e-120 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AatII GACGTC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 496
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 3 cut(s) 118, 170, 247
AclWI GGATC 4 cut(s) 85, 127, 1189, 1334
AcsI RAATTY 2 cut(s) 353, 779
AcuI CTGAAG 3 cut(s) 324, 369, 1265
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 582, 1257
AfiI CCNNNNNNNGG 4 cut(s) 74, 117, 246, 400
AgeI ACCGGT 2 cut(s) 557, 701
AgsI TTSAA 4 cut(s) 434, 646, 683, 1226
AjnI CCWGG 3 cut(s) 301, 820, 1358
AjuI GAANNNNNNNTTGG 2 cut(s) 770, 802
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 1 cut(s) 1390
AlwI GGATC 4 cut(s) 85, 127, 1189, 1334
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 4 cut(s) 299, 315, 527, 838
ApeKI GCWGC 4 cut(s) 167, 244, 254, 1070
ApoI RAATTY 2 cut(s) 353, 779
AsiGI ACCGGT 2 cut(s) 557, 701
Asp700I GAANNNNTTC 3 cut(s) 337, 354, 371
AspS9I GGNCC 4 cut(s) 316, 457, 536, 838
AsuHPI GGTGA 6 cut(s) 57, 72, 245, 716, 810, 866
AsuII TTCGAA 1 cut(s) 1050
AvaII GGWCC 2 cut(s) 457, 536
AxyI CCTNAGG 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 4 cut(s) 154, 256, 266, 1057
BccI CCATC 5 cut(s) 224, 573, 829, 940, 1310
BciT130I CCWGG 3 cut(s) 303, 822, 1360
BciVI GTATCC 1 cut(s) 622
BcoDI GTCTC 1 cut(s) 1390
BfaI CTAG 6 cut(s) 69, 330, 359, 584, 713, 863
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 1 cut(s) 622
BisI GCNGC 4 cut(s) 168, 245, 255, 1071
BlsI GCNGC 4 cut(s) 169, 246, 256, 1072
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 3 cut(s) 303, 822, 1360
Bme18I GGWCC 2 cut(s) 457, 536
BmgT120I GGNCC 4 cut(s) 316, 457, 536, 838
BmiI GGNNCC 2 cut(s) 537, 1027
BmrFI CCNGG 3 cut(s) 303, 822, 1360
BmrI ACTGGG 2 cut(s) 888, 923
BmsI GCATC 2 cut(s) 372, 1388
BmuI ACTGGG 2 cut(s) 888, 923
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpmI CTGGAG 1 cut(s) 843
Bpu14I TTCGAA 1 cut(s) 1050
BpuEI CTTGAG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 4 cut(s) 89, 111, 438, 841
BsaWI WCCGGW 2 cut(s) 557, 701
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 117, 246, 400
Bse118I RCCGGY 2 cut(s) 557, 701
Bse1I ACTGG 2 cut(s) 894, 929
Bse21I CCTNAGG 1 cut(s) 531
BseBI CCWGG 3 cut(s) 303, 822, 1360
BseDI CCNNGG 4 cut(s) 89, 111, 438, 841
BseGI GGATG 2 cut(s) 235, 914
BseLI CCNNNNNNNGG 4 cut(s) 74, 117, 246, 400
BseMII CTCAG 6 cut(s) 258, 522, 600, 738, 1176, 1401
BseNI ACTGG 2 cut(s) 894, 929
BseRI GAGGAG 2 cut(s) 30, 128
BseXI GCAGC 4 cut(s) 154, 256, 266, 1057
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 4 cut(s) 301, 317, 529, 840
BshTI ACCGGT 2 cut(s) 557, 701
BsiHKAI GWGCWC 1 cut(s) 414
BsiSI CCGG 2 cut(s) 558, 702
BslI CCNNNNNNNGG 4 cut(s) 74, 117, 246, 400
BsmAI GTCTC 1 cut(s) 1390
BsnI GGCC 4 cut(s) 301, 317, 529, 840
Bsp119I TTCGAA 1 cut(s) 1050
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 7 cut(s) 77, 132, 586, 987, 1181, 1326, 1366
Bsp19I CCATGG 1 cut(s) 438
BspACI CCGC 3 cut(s) 118, 170, 247
BspANI GGCC 4 cut(s) 301, 317, 529, 840
BspCNI CTCAG 6 cut(s) 259, 523, 601, 737, 1177, 1400
BspLI GGNNCC 2 cut(s) 537, 1027
BspMI ACCTGC 1 cut(s) 496
BspPI GGATC 4 cut(s) 85, 127, 1189, 1334
BspQI GCTCTTC 1 cut(s) 510
BspT104I TTCGAA 1 cut(s) 1050
BsrBI CCGCTC 1 cut(s) 118
BsrFI RCCGGY 2 cut(s) 557, 701
BsrI ACTGG 2 cut(s) 894, 929
BssAI RCCGGY 2 cut(s) 557, 701
BssECI CCNNGG 4 cut(s) 89, 111, 438, 841
BssMI GATC 7 cut(s) 77, 132, 586, 987, 1181, 1326, 1366
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 3 cut(s) 89, 438, 841
Bst2UI CCWGG 3 cut(s) 303, 822, 1360
Bst4CI ACNGT 1 cut(s) 495
Bst6I CTCTTC 4 cut(s) 229, 441, 510, 1329
BstACI GRCGYC 1 cut(s) 62
BstAPI GCANNNNNTGC 1 cut(s) 194
BstBI TTCGAA 1 cut(s) 1050
BstC8I GCNNGC 2 cut(s) 219, 1243
BstDEI CTNAG 6 cut(s) 267, 531, 609, 724, 1185, 1387
BstDSI CCRYGG 1 cut(s) 438
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 235, 914
BstKTI GATC 7 cut(s) 80, 135, 589, 990, 1184, 1329, 1369
BstMAI GTCTC 1 cut(s) 1390
BstMBI GATC 7 cut(s) 77, 132, 586, 987, 1181, 1326, 1366
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 3 cut(s) 303, 822, 1360
BstSCI CCNGG 3 cut(s) 301, 820, 1358
BstV1I GCAGC 4 cut(s) 154, 256, 266, 1057
BstX2I RGATCY 1 cut(s) 1181
BstXI CCANNNNNNTGG 2 cut(s) 90, 1036
BstYI RGATCY 1 cut(s) 1181
Bsu36I CCTNAGG 1 cut(s) 531
BsuI GTATCC 1 cut(s) 622
BsuRI GGCC 4 cut(s) 301, 317, 529, 840
BtgI CCRYGG 1 cut(s) 438
BtsCI GGATG 2 cut(s) 235, 914
BtsIMutI CAGTG 2 cut(s) 264, 500
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 2 cut(s) 219, 1243
CaiI CAGNNNCTG 1 cut(s) 347
Cfr10I RCCGGY 2 cut(s) 557, 701
Cfr13I GGNCC 4 cut(s) 316, 457, 536, 838
Csp6I GTAC 2 cut(s) 581, 1256
CspAI ACCGGT 2 cut(s) 557, 701
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviAII CATG 6 cut(s) 241, 439, 512, 692, 991, 1202
CviQI GTAC 2 cut(s) 581, 1256
DdeI CTNAG 6 cut(s) 267, 531, 609, 724, 1185, 1387
DpnI GATC 7 cut(s) 79, 134, 588, 989, 1183, 1328, 1368
DpnII GATC 7 cut(s) 77, 132, 586, 987, 1181, 1326, 1366
Eam1104I CTCTTC 4 cut(s) 229, 441, 510, 1329
EarI CTCTTC 4 cut(s) 229, 441, 510, 1329
Eco130I CCWWGG 3 cut(s) 89, 438, 841
Eco147I AGGCCT 1 cut(s) 529
Eco47I GGWCC 2 cut(s) 457, 536
Eco57I CTGAAG 3 cut(s) 324, 369, 1265
Eco81I CCTNAGG 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 316
EcoRII CCWGG 3 cut(s) 301, 820, 1358
EcoT14I CCWWGG 3 cut(s) 89, 438, 841
EcoT22I ATGCAT 1 cut(s) 967
ErhI CCWWGG 3 cut(s) 89, 438, 841
FaeI CATG 6 cut(s) 244, 442, 515, 695, 994, 1205
FatI CATG 6 cut(s) 240, 438, 511, 691, 990, 1201
FauI CCCGC 2 cut(s) 111, 163
Fnu4HI GCNGC 4 cut(s) 168, 245, 255, 1071
FokI GGATG 2 cut(s) 242, 901
Fsp4HI GCNGC 4 cut(s) 168, 245, 255, 1071
FspBI CTAG 6 cut(s) 69, 330, 359, 584, 713, 863
GluI GCNGC 4 cut(s) 168, 245, 255, 1071
GsuI CTGGAG 1 cut(s) 843
HaeIII GGCC 4 cut(s) 301, 317, 529, 840
HapII CCGG 2 cut(s) 558, 702
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 6 cut(s) 244, 442, 515, 695, 994, 1205
HindIII AAGCTT 2 cut(s) 294, 1053
HinfI GANTC 7 cut(s) 285, 791, 799, 902, 1010, 1091, 1222
HpaII CCGG 2 cut(s) 558, 702
HphI GGTGA 6 cut(s) 57, 72, 245, 716, 810, 866
Hpy166II GTNNAC 2 cut(s) 539, 814
Hpy188I TCNGA 7 cut(s) 112, 229, 349, 366, 484, 757, 1186
Hpy188III TCNNGA 2 cut(s) 899, 1104
Hpy8I GTNNAC 2 cut(s) 539, 814
HpyAV CCTTC 3 cut(s) 8, 445, 1120
HpyCH4III ACNGT 1 cut(s) 495
HpyCH4IV ACGT 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 6 cut(s) 267, 531, 609, 724, 1185, 1387
HpySE526I ACGT 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 6 cut(s) 244, 442, 515, 695, 994, 1205
Kzo9I GATC 7 cut(s) 77, 132, 586, 987, 1181, 1326, 1366
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 3 cut(s) 115, 693, 1031
Lsp1109I GCAGC 4 cut(s) 154, 256, 266, 1057
LweI GCATC 2 cut(s) 372, 1388
MaeI CTAG 6 cut(s) 69, 330, 359, 584, 713, 863
MaeII ACGT 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 63, 997
MalI GATC 7 cut(s) 79, 134, 588, 989, 1183, 1328, 1368
MbiI CCGCTC 1 cut(s) 118
MboI GATC 7 cut(s) 77, 132, 586, 987, 1181, 1326, 1366
MflI RGATCY 1 cut(s) 1181
MhlI GDGCHC 1 cut(s) 414
MlyI GAGTC 2 cut(s) 896, 1085
MmeI TCCRAC 2 cut(s) 645, 1038
Mph1103I ATGCAT 1 cut(s) 967
MroXI GAANNNNTTC 3 cut(s) 337, 354, 371
MseI TTAA 6 cut(s) 105, 474, 518, 696, 960, 1158
MslI CAYNNNNRTG 1 cut(s) 1034
MspA1I CMGCKG 1 cut(s) 247
MspI CCGG 2 cut(s) 558, 702
MspR9I CCNGG 3 cut(s) 303, 822, 1360
MvaI CCWGG 3 cut(s) 303, 822, 1360
MwoI GCNNNNNNNGC 1 cut(s) 194
NcoI CCATGG 1 cut(s) 438
NdeII GATC 7 cut(s) 77, 132, 586, 987, 1181, 1326, 1366
NlaIII CATG 6 cut(s) 244, 442, 515, 695, 994, 1205
NlaIV GGNNCC 2 cut(s) 537, 1027
NmuCI GTSAC 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 967
NspV TTCGAA 1 cut(s) 1050
PceI AGGCCT 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 510
PdmI GAANNNNTTC 3 cut(s) 337, 354, 371
PfeI GAWTC 5 cut(s) 285, 791, 799, 1010, 1222
PinAI ACCGGT 2 cut(s) 557, 701
PkrI GCNGC 4 cut(s) 169, 246, 256, 1072
PleI GAGTC 2 cut(s) 896, 1085
PpsI GAGTC 2 cut(s) 896, 1085
PsiI TTATAA 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 301, 820, 1358
PspGI CCWGG 3 cut(s) 301, 820, 1358
PspN4I GGNNCC 2 cut(s) 537, 1027
PspPI GGNCC 4 cut(s) 316, 457, 536, 838
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 1 cut(s) 1181
RsaI GTAC 2 cut(s) 582, 1257
RsaNI GTAC 2 cut(s) 581, 1256
RseI CAYNNNNRTG 1 cut(s) 1034
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 6 cut(s) 105, 474, 518, 696, 960, 1158
SatI GCNGC 4 cut(s) 168, 245, 255, 1071
Sau3AI GATC 7 cut(s) 77, 132, 586, 987, 1181, 1326, 1366
Sau96I GGNCC 4 cut(s) 316, 457, 536, 838
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 2 cut(s) 896, 1085
ScrFI CCNGG 3 cut(s) 303, 822, 1360
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 2 cut(s) 372, 1388
SfuI TTCGAA 1 cut(s) 1050
SinI GGWCC 2 cut(s) 457, 536
SmiMI CAYNNNNRTG 1 cut(s) 1034
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SseBI AGGCCT 1 cut(s) 529
SsiI CCGC 3 cut(s) 118, 170, 247
SspI AATATT 1 cut(s) 193
SspMI CTAG 6 cut(s) 69, 330, 359, 584, 713, 863
StuI AGGCCT 1 cut(s) 529
StyD4I CCNGG 3 cut(s) 301, 820, 1358
StyI CCWWGG 3 cut(s) 89, 438, 841
TaaI ACNGT 1 cut(s) 495
TaiI ACGT 1 cut(s) 65
TaqI TCGA 4 cut(s) 180, 1050, 1233, 1369
TaqII GACCGA 1 cut(s) 297
TatI WGTACW 1 cut(s) 580
TfiI GAWTC 5 cut(s) 285, 791, 799, 1010, 1222
Tru1I TTAA 6 cut(s) 105, 474, 518, 696, 960, 1158
Tru9I TTAA 6 cut(s) 105, 474, 518, 696, 960, 1158
TscAI CASTG 2 cut(s) 271, 500
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 4 cut(s) 167, 244, 254, 1070
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 6 cut(s) 27, 468, 500, 1101, 1139, 1218
TspRI CASTG 2 cut(s) 271, 500
VpaK11BI GGWCC 2 cut(s) 457, 536
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 2 cut(s) 353, 779
XmnI GAANNNNTTC 3 cut(s) 337, 354, 371
XspI CTAG 6 cut(s) 69, 330, 359, 584, 713, 863
ZraI GACGTC 1 cut(s) 63
ZrmI AGTACT 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.