Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004572.1

Orthogroup ID

OG0002137

Physical Location & Seq

Genomic Coordinates Forward (+)

8592 .. 9944

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004572.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

atgacgtcacctagtttaggatcaccatacccttggcaaagagaactcaaatccgaggagcggggtctgtgtttgatccacttgttgctcacttgtgcaaattatgttgctgcgggaaacctcgaaaatgcaaatattgcccttgagcaaatctccctgcttgcctcttcggatggtgataccatgcagcggattgcagcctacttcactgaggctcttgctgaccgaatcctcaaagcttggcctggtctttataaggccctatattccacaagaatatcttcagtttctgaagaatttctagttcggaaagtgttctttgagatgcttccattcctaaaggtggcttatgtgctcacaaaccaagctattattgaagccatggaagaagaaaagatggtccatataattgaccttaattcatctgaacctgcacagtggatagctcttcttcatgctttaagtgcaaggcctgagggtccacctcatttgagaattactggtgtccatcaacaaaaagaagtactagatcaaatggctcatagcttgactgaggaagcagaaagattggatactccatttcagttcaatcccgtagtcagcaagttggaaacacttgattttgaaaagctccatgttaaaaccggtgaggctctagctatcagctcagttctccaatttcactccctcttgtcatctgatgatgatttccatagaaagaaattctcattggaatcaaagaatcgaaatagagttcactcacctggagtgttgcaaatggcccaaggcacattgggtgagttgctagagaaagatatgggcaagggatatagccccagtcctgactcaacttcgtcatccccactatccccagttggttctgtgaagatggacagctttcttaatgcattttggggtttgacaccgaagatcatggtagttaccgaacaagattccaaccataatggctccactctaatggagaggctattcgaagctttatactcgtatgctgcattatttgattgcttggagtctacgatgtcaagaacttcattggaaagaatgaaggtagagaaaatgctatttggggaggaaattaaaaacattatagcttgtgaaggatctgagaggaaagaaagacatgaaaaacttgagaagtggattcaaaggctcgatttagctggctttggaaatgtacctttgagctattatggtatgcttcaggcaaggaagttgttgcagggttatggttgtgatggatataggatcagggaagagaatggctgtgtgttgatgtcgtggcaagatcgacccctattttctgtctcagcttggagatgcaggaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

450

Amino Acids

50.83

Weight (kDa)

5.82

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50420
fragaria_vesca	FvH4_7g02290 FvH4_7g02290
malus_domestica	MD02G1295800.v1.1 MD07G1030000.v1.1 MD11G1196300.v1.1
prunus_persica	Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.4G258200_v2.0.a1
pyrus_communis	pycom02g24850 pycom03g12560 pycom07g02200 pycom11g16370
rosa_chinensis	RchiOBHm_Chr1g0319641 RchiOBHm_Chr5g0050921
rosa_laevigata	RLG00000030469 RLG00000034747
rosa_multiflora	Rmu_sc0002539.1_g000095 Rmu_sc0004572.1_g000002 Rmu_sc0017334.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029800
rosa_rugosa	Rorug01G0028900 Rorug01G0029000 Rorug01G0029100 Rorug05G0293900
rosa_samantha	Rh1AG040700 Rh1BG037900 Rh1CG041800 Rh1DG028100 Rh5AG337000 Rh5BG346600 Rh5DG359600
rosa_wichuraiana	Rw0G019990 Rw1G003380 Rw5G031800 Rw5G031860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	439
AccBSI	CCGCTC	1 cut(s)	61
AccI	GTMKAC	1 cut(s)	1037
AciI	CCGC	3 cut(s)	61, 113, 190
AclWI	GGATC	4 cut(s)	28, 70, 1132, 1277
AcsI	RAATTY	2 cut(s)	296, 722
AcuI	CTGAAG	3 cut(s)	267, 312, 1208
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	525, 1200
AfiI	CCNNNNNNNGG	4 cut(s)	17, 60, 189, 343
AgeI	ACCGGT	1 cut(s)	644
AgsI	TTSAA	4 cut(s)	377, 589, 626, 1169
AjnI	CCWGG	2 cut(s)	244, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	1333
AlwI	GGATC	4 cut(s)	28, 70, 1132, 1277
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	4 cut(s)	242, 258, 470, 780
ApeKI	GCWGC	4 cut(s)	110, 187, 197, 1013
ApoI	RAATTY	2 cut(s)	296, 722
AsiGI	ACCGGT	1 cut(s)	644
Asp700I	GAANNNNTTC	3 cut(s)	280, 297, 314
AspS9I	GGNCC	4 cut(s)	259, 400, 479, 781
AsuHPI	GGTGA	5 cut(s)	15, 188, 659, 753, 809
AsuII	TTCGAA	1 cut(s)	993
AvaII	GGWCC	2 cut(s)	400, 479
AxyI	CCTNAGG	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	4 cut(s)	97, 199, 209, 1000
BccI	CCATC	5 cut(s)	167, 391, 516, 883, 1253
BciT130I	CCWGG	2 cut(s)	246, 765
BciVI	GTATCC	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	1333
BfaI	CTAG	5 cut(s)	12, 302, 527, 656, 806
BfuAI	ACCTGC	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	565
BisI	GCNGC	4 cut(s)	111, 188, 198, 1014
BlsI	GCNGC	4 cut(s)	112, 189, 199, 1015
BmcAI	AGTACT	1 cut(s)	525
Bme1390I	CCNGG	2 cut(s)	246, 765
Bme18I	GGWCC	2 cut(s)	400, 479
BmgT120I	GGNCC	4 cut(s)	259, 400, 479, 781
BmiI	GGNNCC	2 cut(s)	480, 970
BmrFI	CCNGG	2 cut(s)	246, 765
BmrI	ACTGGG	2 cut(s)	831, 866
BmsI	GCATC	2 cut(s)	315, 1331
BmuI	ACTGGG	2 cut(s)	831, 866
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
BpmI	CTGGAG	1 cut(s)	786
Bpu14I	TTCGAA	1 cut(s)	993
BpuEI	CTTGAG	2 cut(s)	164, 1175
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	4 cut(s)	32, 54, 381, 784
BsaWI	WCCGGW	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 60, 189, 343
Bse118I	RCCGGY	1 cut(s)	644
Bse1I	ACTGG	3 cut(s)	505, 837, 872
Bse21I	CCTNAGG	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	246, 765
BseDI	CCNNGG	4 cut(s)	32, 54, 381, 784
BseGI	GGATG	2 cut(s)	178, 857
BseLI	CCNNNNNNNGG	4 cut(s)	17, 60, 189, 343
BseMII	CTCAG	6 cut(s)	201, 465, 543, 681, 1119, 1344
BseNI	ACTGG	3 cut(s)	505, 837, 872
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	4 cut(s)	97, 199, 209, 1000
BsgI	GTGCAG	1 cut(s)	417
BshFI	GGCC	4 cut(s)	244, 260, 472, 782
BshTI	ACCGGT	1 cut(s)	644
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	645
BslI	CCNNNNNNNGG	4 cut(s)	17, 60, 189, 343
BsmAI	GTCTC	1 cut(s)	1333
BsnI	GGCC	4 cut(s)	244, 260, 472, 782
Bsp119I	TTCGAA	1 cut(s)	993
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	7 cut(s)	20, 75, 529, 930, 1124, 1269, 1309
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	3 cut(s)	61, 113, 190
BspANI	GGCC	4 cut(s)	244, 260, 472, 782
BspCNI	CTCAG	6 cut(s)	202, 466, 544, 680, 1120, 1343
BspLI	GGNNCC	2 cut(s)	480, 970
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	4 cut(s)	28, 70, 1132, 1277
BspQI	GCTCTTC	1 cut(s)	453
BspT104I	TTCGAA	1 cut(s)	993
BsrBI	CCGCTC	1 cut(s)	61
BsrFI	RCCGGY	1 cut(s)	644
BsrI	ACTGG	3 cut(s)	505, 837, 872
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	4 cut(s)	32, 54, 381, 784
BssMI	GATC	7 cut(s)	20, 75, 529, 930, 1124, 1269, 1309
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	3 cut(s)	32, 381, 784
Bst2UI	CCWGG	2 cut(s)	246, 765
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	3 cut(s)	172, 453, 1272
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstBI	TTCGAA	1 cut(s)	993
BstC8I	GCNNGC	2 cut(s)	162, 1186
BstDEI	CTNAG	6 cut(s)	210, 474, 552, 667, 1128, 1330
BstDSI	CCRYGG	1 cut(s)	381
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	178, 857
BstKTI	GATC	7 cut(s)	23, 78, 532, 933, 1127, 1272, 1312
BstMAI	GTCTC	1 cut(s)	1333
BstMBI	GATC	7 cut(s)	20, 75, 529, 930, 1124, 1269, 1309
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 464
BstNI	CCWGG	2 cut(s)	246, 765
BstSCI	CCNGG	2 cut(s)	244, 763
BstV1I	GCAGC	4 cut(s)	97, 199, 209, 1000
BstX2I	RGATCY	1 cut(s)	1124
BstXI	CCANNNNNNTGG	2 cut(s)	33, 979
BstYI	RGATCY	1 cut(s)	1124
Bsu36I	CCTNAGG	1 cut(s)	474
BsuI	GTATCC	1 cut(s)	565
BsuRI	GGCC	4 cut(s)	244, 260, 472, 782
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	178, 857
BtsIMutI	CAGTG	2 cut(s)	207, 443
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	162, 1186
CaiI	CAGNNNCTG	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	4 cut(s)	259, 400, 479, 781
Csp6I	GTAC	2 cut(s)	524, 1199
CspAI	ACCGGT	1 cut(s)	644
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	6 cut(s)	184, 382, 455, 635, 934, 1145
CviQI	GTAC	2 cut(s)	524, 1199
DdeI	CTNAG	6 cut(s)	210, 474, 552, 667, 1128, 1330
DpnI	GATC	7 cut(s)	22, 77, 531, 932, 1126, 1271, 1311
DpnII	GATC	7 cut(s)	20, 75, 529, 930, 1124, 1269, 1309
Eam1104I	CTCTTC	3 cut(s)	172, 453, 1272
EarI	CTCTTC	3 cut(s)	172, 453, 1272
Eco130I	CCWWGG	3 cut(s)	32, 381, 784
Eco147I	AGGCCT	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	400, 479
Eco57I	CTGAAG	3 cut(s)	267, 312, 1208
Eco81I	CCTNAGG	1 cut(s)	474
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	244, 763
EcoT14I	CCWWGG	3 cut(s)	32, 381, 784
EcoT22I	ATGCAT	1 cut(s)	910
ErhI	CCWWGG	3 cut(s)	32, 381, 784
FaeI	CATG	6 cut(s)	187, 385, 458, 638, 937, 1148
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FatI	CATG	6 cut(s)	183, 381, 454, 634, 933, 1144
FauI	CCCGC	2 cut(s)	54, 106
FblI	GTMKAC	1 cut(s)	1037
Fnu4HI	GCNGC	4 cut(s)	111, 188, 198, 1014
FokI	GGATG	2 cut(s)	185, 844
Fsp4HI	GCNGC	4 cut(s)	111, 188, 198, 1014
FspBI	CTAG	5 cut(s)	12, 302, 527, 656, 806
GluI	GCNGC	4 cut(s)	111, 188, 198, 1014
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	4 cut(s)	244, 260, 472, 782
HapII	CCGG	1 cut(s)	645
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	187, 385, 458, 638, 937, 1148
HindIII	AAGCTT	2 cut(s)	237, 996
HinfI	GANTC	7 cut(s)	228, 734, 742, 845, 953, 1034, 1165
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	5 cut(s)	15, 188, 659, 753, 809
Hpy166II	GTNNAC	3 cut(s)	482, 757, 1038
Hpy188I	TCNGA	7 cut(s)	55, 172, 292, 309, 427, 700, 1129
Hpy188III	TCNNGA	2 cut(s)	842, 1047
Hpy8I	GTNNAC	3 cut(s)	482, 757, 1038
HpyAV	CCTTC	2 cut(s)	1063, 1115
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	1 cut(s)	5
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 464
HpyF3I	CTNAG	6 cut(s)	210, 474, 552, 667, 1128, 1330
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	187, 385, 458, 638, 937, 1148
Kzo9I	GATC	7 cut(s)	20, 75, 529, 930, 1124, 1269, 1309
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	3 cut(s)	58, 636, 974
Lsp1109I	GCAGC	4 cut(s)	97, 199, 209, 1000
LweI	GCATC	2 cut(s)	315, 1331
MaeI	CTAG	5 cut(s)	12, 302, 527, 656, 806
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	2 cut(s)	6, 940
MalI	GATC	7 cut(s)	22, 77, 531, 932, 1126, 1271, 1311
MbiI	CCGCTC	1 cut(s)	61
MboI	GATC	7 cut(s)	20, 75, 529, 930, 1124, 1269, 1309
MflI	RGATCY	1 cut(s)	1124
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	8 cut(s)	100, 296, 408, 418, 495, 677, 722, 1098
MlyI	GAGTC	2 cut(s)	839, 1043
MmeI	TCCRAC	2 cut(s)	588, 981
Mph1103I	ATGCAT	1 cut(s)	910
MroXI	GAANNNNTTC	3 cut(s)	280, 297, 314
MseI	TTAA	5 cut(s)	417, 461, 639, 903, 1101
MslI	CAYNNNNRTG	1 cut(s)	977
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	1 cut(s)	645
MspR9I	CCNGG	2 cut(s)	246, 765
MvaI	CCWGG	2 cut(s)	246, 765
MwoI	GCNNNNNNNGC	2 cut(s)	137, 464
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	7 cut(s)	20, 75, 529, 930, 1124, 1269, 1309
NlaIII	CATG	6 cut(s)	187, 385, 458, 638, 937, 1148
NlaIV	GGNNCC	2 cut(s)	480, 970
NmuCI	GTSAC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	910
NspV	TTCGAA	1 cut(s)	993
PceI	AGGCCT	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	453
PdmI	GAANNNNTTC	3 cut(s)	280, 297, 314
PfeI	GAWTC	5 cut(s)	228, 734, 742, 953, 1165
PinAI	ACCGGT	1 cut(s)	644
PkrI	GCNGC	4 cut(s)	112, 189, 199, 1015
PleI	GAGTC	2 cut(s)	839, 1042
PpsI	GAGTC	2 cut(s)	839, 1042
PsiI	TTATAA	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	244, 763
PspGI	CCWGG	2 cut(s)	244, 763
PspN4I	GGNNCC	2 cut(s)	480, 970
PspPI	GGNCC	4 cut(s)	259, 400, 479, 781
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	1124
RsaI	GTAC	2 cut(s)	525, 1200
RsaNI	GTAC	2 cut(s)	524, 1199
RseI	CAYNNNNRTG	1 cut(s)	977
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	5 cut(s)	417, 461, 639, 903, 1101
SatI	GCNGC	4 cut(s)	111, 188, 198, 1014
Sau3AI	GATC	7 cut(s)	20, 75, 529, 930, 1124, 1269, 1309
Sau96I	GGNCC	4 cut(s)	259, 400, 479, 781
ScaI	AGTACT	1 cut(s)	525
SchI	GAGTC	2 cut(s)	839, 1043
ScrFI	CCNGG	2 cut(s)	246, 765
SduI	GDGCHC	1 cut(s)	357
SfaNI	GCATC	2 cut(s)	315, 1331
SfuI	TTCGAA	1 cut(s)	993
SinI	GGWCC	2 cut(s)	400, 479
SmiMI	CAYNNNNRTG	1 cut(s)	977
SmlI	CTYRAG	2 cut(s)	143, 1154
SmoI	CTYRAG	2 cut(s)	143, 1154
Sse9I	AATT	8 cut(s)	100, 296, 408, 418, 495, 677, 722, 1098
SseBI	AGGCCT	1 cut(s)	472
SsiI	CCGC	3 cut(s)	61, 113, 190
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	5 cut(s)	12, 302, 527, 656, 806
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	244, 763
StyI	CCWWGG	3 cut(s)	32, 381, 784
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	5 cut(s)	123, 745, 993, 1176, 1312
TaqII	GACCGA	1 cut(s)	240
TasI	AATT	8 cut(s)	100, 296, 408, 418, 495, 677, 722, 1098
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	5 cut(s)	228, 734, 742, 953, 1165
Tru1I	TTAA	5 cut(s)	417, 461, 639, 903, 1101
Tru9I	TTAA	5 cut(s)	417, 461, 639, 903, 1101
TscAI	CASTG	2 cut(s)	214, 443
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	4 cut(s)	110, 187, 197, 1013
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	5 cut(s)	411, 443, 1044, 1082, 1161
TspRI	CASTG	2 cut(s)	214, 443
VpaK11BI	GGWCC	2 cut(s)	400, 479
XagI	CCTNNNNNAGG	1 cut(s)	15
XapI	RAATTY	2 cut(s)	296, 722
XmiI	GTMKAC	1 cut(s)	1037
XmnI	GAANNNNTTC	3 cut(s)	280, 297, 314
XspI	CTAG	5 cut(s)	12, 302, 527, 656, 806
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	525
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.