RLG00000030469

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002137
Physical Location & Seq
Reverse (-)
62135944 .. 62138323
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030469

Sequence Viewer

Length: 1401 bp
ATGGAAAAGTCCTTTAAAACAAGAGCTTTATTACCCTTTCACTCCTCTTCTTCACTTTGCAACAAAACCTCACATCACAAACCCATTAGAGTCCTCATACGGAATTTGGATTTTCGTTTCACAACTTCCTCTCTGCATTCCATGAGTGTTCTCTTTGTTGATCAAAAAATGGCGCAAGAGGACGGGTCACCTGTAACTTCATCAGCCATGTACTTTCCCGGTTTAGGATCTCCTTACCCTTGGCTTTCCCCCGGTATAGGGTCTCCATACCCTTGGCTGAGGGAGCTAAAATCTGAAGAGCGAGGTTTATGTCTGATCCAACTTCTTCAAGGCTGTGCTCATCATGTCGCTTCTGGTAGTATTGAGCAGGCAAATGTTTGGCTTGAGCAGATTTCTCAGCTCGCCTCTGCTGGTGGCGATACAATGCAGCGAATAGCGGCTTATTTCACTGAGGCACTTGCAGATCGAATGCTGAAAGGTTTGCCTGGTCTATATAAGGCCCTTAACTCAACGAAACTATCATCAATCGCAGAAGAAATTCACATTAAAAGGCTTTTCTTTGATCTCTGTCCCTTCTTAAAGCTTTCATATGTGATAACAAATCAGGCGATAGTGGAAGCTATGGAAGGGGAGAAGATGGTTCATATTATTGATCTTCATTCATTTGAGCCTGCCCAGTGGATAAATCTGATTCAGACATTAAATGCAAGACCTGAAGGTCCACCACATTTGAGAATTACAGGCATTCATGAACATAAGGAGGTGTTGGAGCAAATGGCCGCCAGGTTGACAGAAGAAGCTGAAAAACATGACATTCCCTTTCAGTTCAATGCTATAGTGAGCAAGTTAGAGAATCTTGATGTTGAAAGTTTACGTGTGAAGACTGGAGAAGCTCTTGCAGTCTGCTCTGTACTCCAGCTGCATTCACTCTTAGCAACCGATGATGACATGACCAGAAGGAAATCTCCATTAGCAACAAATAACCTGCAAAAGGAATCAAACCACAATGGTCATACACTGATGGACAGGATCATAGAAGCACTGCACTACTATGCAGCACTTTTTGATTGCTTGGAGTCTACAGTATCGAGAGCATCAATGGAGCGGCAAAAGGTTGAGAAGATGCTTTTTGGGGAGGAAATCAAAAACATCATATCATGTGAAGGAACTGACAGAAAGGAGAGGCATGAGAAGCTTGAGAAGTGGATTTTAAGGCTAGAGTTGTCTGGCTTTGGGAGGGTGCAGTTGAGCTACCATGGAAGGATGCAGGCGAAGAAGATGTTGCGTGACTATGGCTATGATGGCTATGAGATTAAAGAAGACAATGGATGTTTGGTTATTTGCTGGCATGACAGACCACTTTTTTCGGTGTCAGCCTGGAGGTTCCGGAGATACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

467

Amino Acids

53.15

Weight (kDa)

6.71

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 105 - 461 3.7e-116 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 717
Acc36I ACCTGC 1 cut(s) 993
AccBSI CCGCTC 1 cut(s) 1105
AccI GTMKAC 1 cut(s) 1079
AccIII TCCGGA 1 cut(s) 1386
AciI CCGC 3 cut(s) 437, 780, 1105
AclWI GGATC 3 cut(s) 235, 310, 1037
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 2 cut(s) 103, 537
AcuI CTGAAG 2 cut(s) 315, 735
AfaI GTAC 2 cut(s) 212, 912
AfiI CCNNNNNNNGG 4 cut(s) 224, 257, 258, 991
AflIII ACRYGT 1 cut(s) 874
AgsI TTSAA 3 cut(s) 329, 829, 866
AjnI CCWGG 3 cut(s) 484, 782, 1376
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 3 cut(s) 235, 310, 1037
Aor13HI TCCGGA 1 cut(s) 1386
AoxI GGCC 2 cut(s) 498, 777
ApeKI GCWGC 3 cut(s) 427, 919, 1055
ApoI RAATTY 2 cut(s) 103, 537
Asp700I GAANNNNTTC 1 cut(s) 537
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 499, 719
AsuC2I CCSGG 2 cut(s) 219, 252
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 719
BbsI GAAGAC 2 cut(s) 887, 1326
Bbv12I GWGCWC 1 cut(s) 340
BbvCI CCTCAGC 1 cut(s) 278
BbvI GCAGC 3 cut(s) 439, 906, 1067
BccI CCATC 3 cut(s) 631, 1015, 1295
BciT130I CCWGG 3 cut(s) 486, 784, 1378
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 2 cut(s) 219, 252
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 1217
BfmI CTRYAG 2 cut(s) 834, 1080
BfuAI ACCTGC 1 cut(s) 993
BisI GCNGC 6 cut(s) 428, 438, 780, 920, 1056, 1106
BlsI GCNGC 6 cut(s) 429, 439, 781, 921, 1057, 1107
Bme1390I CCNGG 5 cut(s) 219, 252, 486, 784, 1378
Bme18I GGWCC 1 cut(s) 719
BmgT120I GGNCC 2 cut(s) 499, 719
BmiI GGNNCC 1 cut(s) 1385
BmrFI CCNGG 5 cut(s) 219, 252, 486, 784, 1378
BmrI ACTGGG 1 cut(s) 670
BmsI GCATC 3 cut(s) 1103, 1113, 1254
BmuI ACTGGG 1 cut(s) 670
BpiI GAAGAC 2 cut(s) 887, 1326
BpmI CTGGAG 3 cut(s) 899, 906, 1399
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 2 cut(s) 404, 1217
BpuMI CCSGG 2 cut(s) 219, 252
BsaAI YACGTR 1 cut(s) 875
BsaI GGTCTC 1 cut(s) 267
BsaJI CCNNGG 4 cut(s) 239, 250, 272, 1255
BsaWI WCCGGW 1 cut(s) 1386
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 257, 258, 991
Bse1I ACTGG 2 cut(s) 676, 889
BseAI TCCGGA 1 cut(s) 1386
BseBI CCWGG 3 cut(s) 486, 784, 1378
BseDI CCNNGG 4 cut(s) 239, 250, 272, 1255
BseGI GGATG 2 cut(s) 1269, 1334
BseLI CCNNNNNNNGG 4 cut(s) 224, 257, 258, 991
BseMII CTCAG 3 cut(s) 269, 410, 441
BseNI ACTGG 2 cut(s) 676, 889
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 3 cut(s) 439, 906, 1067
BsgI GTGCAG 2 cut(s) 1028, 1262
BshFI GGCC 2 cut(s) 500, 779
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 3 cut(s) 219, 252, 1387
BslFI GGGAC 1 cut(s) 555
BslI CCNNNNNNNGG 4 cut(s) 224, 257, 258, 991
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 555
BsmI GAATGC 4 cut(s) 136, 474, 744, 922
BsnI GGCC 2 cut(s) 500, 779
Bso31I GGTCTC 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 1386
Bsp143I GATC 7 cut(s) 160, 227, 315, 463, 562, 652, 1029
Bsp19I CCATGG 1 cut(s) 1255
BspACI CCGC 3 cut(s) 437, 780, 1105
BspANI GGCC 2 cut(s) 500, 779
BspCNI CTCAG 3 cut(s) 270, 409, 442
BspEI TCCGGA 1 cut(s) 1386
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 1 cut(s) 1385
BspMI ACCTGC 1 cut(s) 993
BspPI GGATC 3 cut(s) 235, 310, 1037
BspQI GCTCTTC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 267
BsrBI CCGCTC 1 cut(s) 1105
BsrI ACTGG 2 cut(s) 676, 889
BssECI CCNNGG 4 cut(s) 239, 250, 272, 1255
BssMI GATC 7 cut(s) 160, 227, 315, 463, 562, 652, 1029
BssT1I CCWWGG 3 cut(s) 239, 272, 1255
Bst2UI CCWGG 3 cut(s) 486, 784, 1378
Bst4CI ACNGT 1 cut(s) 1084
Bst6I CTCTTC 2 cut(s) 52, 291
BstBAI YACGTR 1 cut(s) 875
BstC8I GCNNGC 5 cut(s) 369, 402, 672, 1269, 1346
BstDEI CTNAG 4 cut(s) 278, 396, 450, 931
BstDSI CCRYGG 1 cut(s) 1255
BstEII GGTNACC 1 cut(s) 186
BstENI CCTNNNNNAGG 1 cut(s) 989
BstF5I GGATG 2 cut(s) 1269, 1334
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 7 cut(s) 163, 230, 318, 466, 565, 655, 1032
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 7 cut(s) 160, 227, 315, 463, 562, 652, 1029
BstMWI GCNNNNNNNGC 3 cut(s) 283, 1192, 1302
BstNI CCWGG 3 cut(s) 486, 784, 1378
BstPI GGTNACC 1 cut(s) 186
BstSCI CCNGG 5 cut(s) 217, 250, 484, 782, 1376
BstSFI CTRYAG 2 cut(s) 834, 1080
BstV1I GCAGC 3 cut(s) 439, 906, 1067
BstV2I GAAGAC 2 cut(s) 887, 1326
BstX2I RGATCY 1 cut(s) 227
BstXI CCANNNNNNTGG 1 cut(s) 273
BstYI RGATCY 1 cut(s) 227
BsuRI GGCC 2 cut(s) 500, 779
BtgI CCRYGG 1 cut(s) 1255
BtsCI GGATG 2 cut(s) 1269, 1334
BtsI GCAGTG 1 cut(s) 1040
BtsIMutI CAGTG 4 cut(s) 447, 683, 1016, 1040
BveI ACCTGC 1 cut(s) 993
Cac8I GCNNGC 5 cut(s) 369, 402, 672, 1269, 1346
CciI TCATGA 1 cut(s) 748
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 499, 719
Csp6I GTAC 2 cut(s) 211, 911
CspCI CAANNNNNGTGG 2 cut(s) 711, 746
CviQI GTAC 2 cut(s) 211, 911
DdeI CTNAG 4 cut(s) 278, 396, 450, 931
DpnI GATC 7 cut(s) 162, 229, 317, 465, 564, 654, 1031
DpnII GATC 7 cut(s) 160, 227, 315, 463, 562, 652, 1029
DraI TTTAAA 1 cut(s) 16
DrdI GACNNNNNNGTC 1 cut(s) 717
DseDI GACNNNNNNGTC 1 cut(s) 717
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 2 cut(s) 52, 291
EarI CTCTTC 2 cut(s) 52, 291
Eco130I CCWWGG 3 cut(s) 239, 272, 1255
Eco31I GGTCTC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 719
Eco57I CTGAAG 2 cut(s) 315, 735
Eco91I GGTNACC 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 989
EcoO109I RGGNCCY 1 cut(s) 499
EcoO65I GGTNACC 1 cut(s) 186
EcoRII CCWGG 3 cut(s) 484, 782, 1376
EcoT14I CCWWGG 3 cut(s) 239, 272, 1255
ErhI CCWWGG 3 cut(s) 239, 272, 1255
FaqI GGGAC 1 cut(s) 555
FauNDI CATATG 1 cut(s) 589
FbaI TGATCA 1 cut(s) 160
FblI GTMKAC 1 cut(s) 1079
Fnu4HI GCNGC 6 cut(s) 428, 438, 780, 920, 1056, 1106
FokI GGATG 2 cut(s) 1276, 1341
Fsp4HI GCNGC 6 cut(s) 428, 438, 780, 920, 1056, 1106
FspBI CTAG 1 cut(s) 1217
GlaI GCGC 1 cut(s) 174
GluI GCNGC 6 cut(s) 428, 438, 780, 920, 1056, 1106
GsuI CTGGAG 3 cut(s) 899, 906, 1399
HaeIII GGCC 2 cut(s) 500, 779
HapII CCGG 3 cut(s) 219, 252, 1387
HhaI GCGC 1 cut(s) 175
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HindIII AAGCTT 2 cut(s) 581, 1193
HinfI GANTC 5 cut(s) 90, 691, 853, 995, 1076
HpaII CCGG 3 cut(s) 219, 252, 1387
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 4 cut(s) 722, 789, 872, 1080
Hpy188I TCNGA 4 cut(s) 295, 315, 690, 696
Hpy188III TCNNGA 4 cut(s) 749, 857, 1089, 1387
Hpy8I GTNNAC 4 cut(s) 722, 789, 872, 1080
HpyAV CCTTC 6 cut(s) 583, 620, 710, 951, 1157, 1254
HpyCH4III ACNGT 1 cut(s) 1084
HpyCH4IV ACGT 1 cut(s) 874
HpyF10VI GCNNNNNNNGC 3 cut(s) 283, 1192, 1302
HpyF3I CTNAG 4 cut(s) 278, 396, 450, 931
HpySE526I ACGT 1 cut(s) 874
HspAI GCGC 1 cut(s) 173
Kpn2I TCCGGA 1 cut(s) 1386
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 7 cut(s) 160, 227, 315, 463, 562, 652, 1029
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 3 cut(s) 283, 769, 1102
Lsp1109I GCAGC 3 cut(s) 439, 906, 1067
LweI GCATC 3 cut(s) 1103, 1113, 1254
MaeI CTAG 1 cut(s) 1217
MaeII ACGT 1 cut(s) 874
MaeIII GTNAC 3 cut(s) 186, 193, 1286
MalI GATC 7 cut(s) 162, 229, 317, 465, 564, 654, 1031
MbiI CCGCTC 1 cut(s) 1105
MboI GATC 7 cut(s) 160, 227, 315, 463, 562, 652, 1029
MflI RGATCY 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 3 cut(s) 103, 537, 735
MlyI GAGTC 2 cut(s) 99, 1085
MmeI TCCRAC 2 cut(s) 343, 747
MroI TCCGGA 1 cut(s) 1386
MroXI GAANNNNTTC 1 cut(s) 537
MseI TTAA 7 cut(s) 15, 504, 546, 578, 701, 1211, 1314
MslI CAYNNNNRTG 1 cut(s) 1050
MspA1I CMGCKG 1 cut(s) 919
MspI CCGG 3 cut(s) 219, 252, 1387
MspR9I CCNGG 5 cut(s) 219, 252, 486, 784, 1378
Mva1269I GAATGC 4 cut(s) 136, 474, 744, 922
MvaI CCWGG 3 cut(s) 486, 784, 1378
MwoI GCNNNNNNNGC 3 cut(s) 283, 1192, 1302
NciI CCSGG 2 cut(s) 219, 252
NcoI CCATGG 1 cut(s) 1255
NdeI CATATG 1 cut(s) 589
NdeII GATC 7 cut(s) 160, 227, 315, 463, 562, 652, 1029
NlaIV GGNNCC 1 cut(s) 1385
NmuCI GTSAC 2 cut(s) 186, 1286
PagI TCATGA 1 cut(s) 748
PciSI GCTCTTC 1 cut(s) 291
PctI GAATGC 4 cut(s) 136, 474, 744, 922
PdmI GAANNNNTTC 1 cut(s) 537
PfeI GAWTC 3 cut(s) 691, 853, 995
PkrI GCNGC 6 cut(s) 429, 439, 781, 921, 1057, 1107
PleI GAGTC 2 cut(s) 98, 1084
PpsI GAGTC 2 cut(s) 98, 1084
Ppu21I YACGTR 1 cut(s) 875
Psp6I CCWGG 3 cut(s) 484, 782, 1376
PspEI GGTNACC 1 cut(s) 186
PspGI CCWGG 3 cut(s) 484, 782, 1376
PspN4I GGNNCC 1 cut(s) 1385
PspPI GGNCC 2 cut(s) 499, 719
PsuI RGATCY 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 919
RsaI GTAC 2 cut(s) 212, 912
RsaNI GTAC 2 cut(s) 211, 911
RseI CAYNNNNRTG 1 cut(s) 1050
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 7 cut(s) 15, 504, 546, 578, 701, 1211, 1314
SatI GCNGC 6 cut(s) 428, 438, 780, 920, 1056, 1106
Sau3AI GATC 7 cut(s) 160, 227, 315, 463, 562, 652, 1029
Sau96I GGNCC 2 cut(s) 499, 719
SchI GAGTC 2 cut(s) 99, 1085
ScrFI CCNGG 5 cut(s) 219, 252, 486, 784, 1378
SduI GDGCHC 1 cut(s) 340
SfaNI GCATC 3 cut(s) 1103, 1113, 1254
SfcI CTRYAG 2 cut(s) 834, 1080
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 1 cut(s) 1050
SmlI CTYRAG 2 cut(s) 383, 1196
SmoI CTYRAG 2 cut(s) 383, 1196
Sse9I AATT 3 cut(s) 103, 537, 735
SsiI CCGC 3 cut(s) 437, 780, 1105
SspMI CTAG 1 cut(s) 1217
StyD4I CCNGG 5 cut(s) 217, 250, 484, 782, 1376
StyI CCWWGG 3 cut(s) 239, 272, 1255
TaaI ACNGT 1 cut(s) 1084
TaiI ACGT 1 cut(s) 877
TaqI TCGA 2 cut(s) 466, 1088
TasI AATT 3 cut(s) 103, 537, 735
TatI WGTACW 2 cut(s) 210, 910
TauI GCSGC 3 cut(s) 440, 782, 1108
TfiI GAWTC 3 cut(s) 691, 853, 995
Tru1I TTAA 7 cut(s) 15, 504, 546, 578, 701, 1211, 1314
Tru9I TTAA 7 cut(s) 15, 504, 546, 578, 701, 1211, 1314
TscAI CASTG 4 cut(s) 454, 683, 1023, 1047
TseFI GTSAC 2 cut(s) 186, 1286
TseI GCWGC 3 cut(s) 427, 919, 1055
Tsp45I GTSAC 2 cut(s) 186, 1286
TspDTI ATGAA 7 cut(s) 189, 576, 632, 647, 651, 737, 765
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 4 cut(s) 454, 683, 1023, 1047
VpaK11BI GGWCC 1 cut(s) 719
XagI CCTNNNNNAGG 1 cut(s) 989
XapI RAATTY 2 cut(s) 103, 537
XmiI GTMKAC 1 cut(s) 1079
XmnI GAANNNNTTC 1 cut(s) 537
XspI CTAG 1 cut(s) 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.