Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002137

Physical Location & Seq

Genomic Coordinates Reverse (-)

33924145 .. 33927415

Gene Structure 3271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0293900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3048 bp

ATGGATAGCTTCTATGCAAACTTATTCAAGCCTACCAGTTATCATCTCCTCAACATTATTGCTCACTACTTCCTGTTTCTTTTTCTGGCATCTGCATATCTGCAGACTGCTAAGCTCAGTTTGGGTGATGGGCTTCCACACAGTGTGGGATCATCATGCATTGAAGGAGAGAGACGAGCACTTCTGAGCTTCAAACAAGATGTTACCGATCCTTCTGGTAGGCTCTCTTCCTGGGTGGGTCAGGATTGCTGTCGATGGAGGGGGATTTCATGCAACAACCGCACAGGTCACGTTGTGAGGATAGACCTCCGGAACTTGCACTGGTCGGTTGACAAAAGTACATGTTTGGGGGGTAAGATAAATTCTTCTTTGCTTGGCTTGAAACATTTATTGTACCTAGATCTAAGCTGGAATGATTTTCCACATATTCACATTCCCAAGTTCATTGGGCAGCTTACAAGTTTAAGGTATCTCAATCTCTCATTTACATCATTCGGGGGAGAGATTCCCCCTTCTCTTGGTAACCTATCAAACCTGAACTATCTTGACCTCAGTTCTGCGGTTGTTTCTTCCAAAAACTTCAATTGGCTTTCTCATCTCTCTTCCCTAAAATATCTAGATATTGGATATTTGGATCTTGGTAGCTCAGCACTATCTTGGGTGCACGATGTTAAGATGCCACCTTTACTGTTAGAGTTATATTTGTCCGAATGCAATCTTGGTGAAAATGTTCCACACTCCCTGCCTTCAATGAACTTCACATCATTACTGGTTTTTGATATATCAAATAATTTTATCAATTCTTCATATCCCAGCTGGTTTTTTAATCTTACCAACCTCAAAAGACTTGATCTAGAGGGCAATTTTTTCAACGGTCCCTTCCCCGTTGAAATTGCAAACCTCAAGTCTCTGGAAGACCTGGGTTTAGGTAATGATTTTCTCCAAGGTCAAATTCCCAAAGTCATTGGGACTTTGTGCAGCCTAAGGATATTAGATCTTTCGTGGAACTCGTTGGATGGTGGCTTGGAAGAGGTTTTGAATGGTTTCTCAAACTGTACAAATTATAGTTTAGAGTCACTTGATTTGTCCAACAATCTGCTAGAAGGCGAATTGCCTGCTGCCCTGGGAATCCTAGAAAATCTGCAGGAACTTTACCTCTCTGTTAATCATTTTTCGGGTTCAATTCCAGAAACTTTTGGAAATCTGTCCTCCTTGAAATCACTGGACCTTACTTCCAATCAAATGAACGGGTCCATTCCTGAAAGTTTGGGGCAACTCAATCAGCTAGTTGACCTACATCTATCTTCTCGTTCGTGGGAAGGCACTTCTAATTCGTGGGAAGGCATTTTAACTGAAGCACATTTCCTACATCTCTCTAGGTTAAAGTCTTTCCAAGTAGGCACAGACCGACCTAGGTCCCTCATTTTTAACGTGGCTCATGAGTGGGTTCCTCCTTTCCAGCTTGACTCACTTTACATTGAGAACTGTACAGTAGGTCCTACCTTTGGGGTATGGCTTCAATCTCAAACTGAACTAGTGGAGGTCACCCTTCATAATACTGGAATAAGAGACACCATACCAGAGGAATGGTTCTTGAAGATGTCTTCCAAACTCACACGTTTGGATTTGTCTTACAACCAAATCCATGGAAAGCTTCCATTCATAATGAACTCTCCAAATTTGATGTATATAGATTTGAGTTATAATCAATTTGAAGGCTCTCTGCCACATTGGTCTAGTAGTAATGCCTCGATCCTCGATCTTCGAACCAATTTATTTTCTGGGCCAATTCCCTCAAATTATGATCAATTGTTGCCTACGTTGCACGAGTTGTACCTATCTGAGAATCATTTGAACGGTACTATACCACCCTCTATGTGCAACATGAGACATCTGTCAATTCTTGCATTAAGGAGCAATCAATTGTCTGGAGAATTCCCTCAAGCATGGAGTGTGTGGCCATATATGTGGGTTGTAGATGTCTCTAGCAACAATTTGTCTGGCAATATCCCTACTTCAATGGGTGTTCCAAGCTCACTATTGATATTGAAGCTGAGCGACAATCATTTTGGGGGTAAAATTCCTTCTTCTCTATTCCAAAATTGCACTGATTTGAGGAGTATTGATCTTGGAGGCAATAGATTTACTGGAAGCATCCCTTTATGGACAAGTTCATATGTATCATCTGATTTATACAAGTTACAATTGCGATCAAACTCTTTAAGCGGACATATCCCCCATCGATTGTGCTCACTTCCAGCCCTTCATATCATAGACCTTGGCCACAACAACTTTTCAGGGAGCATTCCCAAGTGTTTGTATAATTTGACAGCTTTGGCATATGGTAATGACACTCGTGACTCCTATATTCAAAATTATCTTGAGAAGTCCAGCTTGACGTTAAAGGGACAAGAACTCGTGTACAACACGACTCTGGCTTTGGTAAAAAGCATTGATTTCTCATCAAATAACTTAGAAGGTGTAATCCCTGAAGGAATAAGCAGCCTCATTGCCTTGGGTACGTTGAACTTGTCCAGAAATCAACTAAGTGGAAACATTCCTTCAAAGATTGGAAACTTGCGATGGCTGGAAACCCTTGATCTCTCACACAATCACCTTTCAGGACAGATTCCTCAAAGTCTCTCATCATTAACCTCATTGTCTCACTTGAACTTGTCTTATAACGGCTTGATCGGAAGGATTCCTACAAGCACCCAACTCCAGACACTCAATGATGCATCCATTTATGTGAGCAATCCATATCTATGCGGATTTCCTCTTTTAACCAAGTGCTCGGGAGATAGCACACTTACATTGACTAATCCTGGTGGTGATGAAACAGACAATGAAGTTAAAGATGACAATGGAAATCTTGGTTTCTATGTAAGCATCATACTTGGCTTTATCCTAGGCTTTTGGGGTGTTTGTGGGACATTGCTTGTTAAACACTCATGGAGGTATGCCTATTTTCGATTCTTCGATGACATTAAAGATAAAGTAGCATTGGCAATTGCATTGAAGGTGGCTCAATTCCAAAGACGATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

1015

Amino Acids

112.86

Weight (kDa)

5.76

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	56 - 92	9.1e-13	Leucine rich repeat N-terminal domain
LRR_14	PF23598	124 - 209	3.5e-07	Leucine-rich repeat region
LRR_14	PF23598	252 - 346	2.6e-06	Leucine-rich repeat region
LRR_14	PF23598	356 - 509	2.8e-12	Leucine-rich repeat region
LRR_8	PF13855	380 - 436	5e-08	Leucine rich repeat
LRR_14	PF23598	826 - 915	3.5e-08	Leucine-rich repeat region
LRR_8	PF13855	858 - 897	4e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002137)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50420
fragaria_vesca	FvH4_7g02290 FvH4_7g02290
malus_domestica	MD02G1295800.v1.1 MD07G1030000.v1.1 MD11G1196300.v1.1
prunus_persica	Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.2G028700_v2.0.a1 Prupe.4G258200_v2.0.a1
pyrus_communis	pycom02g24850 pycom03g12560 pycom07g02200 pycom11g16370
rosa_chinensis	RchiOBHm_Chr1g0319641 RchiOBHm_Chr5g0050921
rosa_laevigata	RLG00000030469 RLG00000034747
rosa_multiflora	Rmu_sc0002539.1_g000095 Rmu_sc0004572.1_g000002 Rmu_sc0017334.1_g000002
rosa_roxburghii	Rroxscaffold_1G00029800
rosa_rugosa	Rorug01G0028900 Rorug01G0029000 Rorug01G0029100 Rorug05G0293900
rosa_samantha	Rh1AG040700 Rh1BG037900 Rh1CG041800 Rh1DG028100 Rh5AG337000 Rh5BG346600 Rh5DG359600
rosa_wichuraiana	Rw0G019990 Rw1G003380 Rw5G031800 Rw5G031860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1704, 2682
AccIII	TCCGGA	1 cut(s)	309
AciI	CCGC	4 cut(s)	280, 560, 2226, 2769
AclWI	GGATC	4 cut(s)	157, 203, 642, 1747
AcoI	YGGCCR	2 cut(s)	1958, 2281
AcsI	RAATTY	5 cut(s)	361, 951, 1678, 1934, 2079
AcuI	CTGAAG	2 cut(s)	1374, 2511
AdeI	CACNNNGTG	3 cut(s)	143, 145, 295
AfaI	GTAC	8 cut(s)	340, 395, 1057, 1489, 1835, 1861, 2423, 2521
AfiI	CCNNNNNNNGG	2 cut(s)	518, 1505
AflIII	ACRYGT	2 cut(s)	341, 1616
AhlI	ACTAGT	1 cut(s)	1534
AjnI	CCWGG	4 cut(s)	230, 918, 1122, 2824
AjuI	GAANNNNNNNTTGG	4 cut(s)	702, 734, 936, 968
Alw21I	GWGCWC	4 cut(s)	181, 666, 2252, 2795
Alw26I	GTCTC	7 cut(s)	166, 912, 1563, 1882, 1987, 2645, 2667
Alw44I	GTGCAC	1 cut(s)	662
AlwI	GGATC	4 cut(s)	157, 203, 642, 1747
Ama87I	CYCGRG	1 cut(s)	2794
Aor13HI	TCCGGA	1 cut(s)	309
AoxI	GGCC	3 cut(s)	1784, 1958, 2281
ApaLI	GTGCAC	1 cut(s)	662
ApeKI	GCWGC	4 cut(s)	451, 978, 1118, 2502
ApoI	RAATTY	5 cut(s)	361, 951, 1678, 1934, 2079
ArsI	GACNNNNNNTTYG	6 cut(s)	890, 922, 2051, 2083, 2422, 2454
Asp700I	GAANNNNTTC	2 cut(s)	729, 1043
AspA2I	CCTAGG	2 cut(s)	1412, 2908
AspS9I	GGNCC	6 cut(s)	875, 1225, 1251, 1416, 1496, 1784
AsuHPI	GGTGA	5 cut(s)	137, 734, 1537, 2606, 2843
AsuII	TTCGAA	1 cut(s)	1765
AvaI	CYCGRG	1 cut(s)	2794
AvaII	GGWCC	5 cut(s)	875, 1225, 1251, 1416, 1496
AvrII	CCTAGG	2 cut(s)	1412, 2908
AxyI	CCTNAGG	1 cut(s)	983
BaeGI	GKGCMC	1 cut(s)	666
BalI	TGGCCA	2 cut(s)	1960, 2283
BarI	GAAGNNNNNNTAC	6 cut(s)	211, 243, 2068, 2100, 2689, 2721
BauI	CACGAG	3 cut(s)	1826, 2355, 2417
BbsI	GAAGAC	2 cut(s)	921, 1596
Bbv12I	GWGCWC	4 cut(s)	181, 666, 2252, 2795
BbvI	GCAGC	4 cut(s)	463, 990, 1105, 2514
BccI	CCATC	5 cut(s)	122, 249, 1010, 2247, 2577
BceAI	ACGGC	1 cut(s)	2701
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BciT130I	CCWGG	4 cut(s)	232, 920, 1124, 2826
BclI	TGATCA	1 cut(s)	1804
BcoDI	GTCTC	7 cut(s)	166, 912, 1563, 1882, 1987, 2645, 2667
BcuI	ACTAGT	1 cut(s)	1534
BfmI	CTRYAG	2 cut(s)	101, 1142
BglII	AGATCT	2 cut(s)	400, 994
BisI	GCNGC	4 cut(s)	452, 979, 1119, 2503
BlnI	CCTAGG	2 cut(s)	1412, 2908
BlpI	GCTNAGC	3 cut(s)	111, 646, 2054
BlsI	GCNGC	4 cut(s)	453, 980, 1120, 2504
Bme1390I	CCNGG	4 cut(s)	232, 920, 1124, 2826
Bme18I	GGWCC	5 cut(s)	875, 1225, 1251, 1416, 1496
BmeT110I	CYCGRG	1 cut(s)	2794
BmgT120I	GGNCC	6 cut(s)	875, 1225, 1251, 1416, 1496, 1784
BmiI	GGNNCC	4 cut(s)	877, 1252, 1418, 1449
BmrFI	CCNGG	4 cut(s)	232, 920, 1124, 2826
BmsI	GCATC	6 cut(s)	98, 666, 2163, 2725, 2747, 2898
BoxI	GACNNNNGTC	2 cut(s)	1414, 1894
BpiI	GAAGAC	2 cut(s)	921, 1596
BpmI	CTGGAG	2 cut(s)	1950, 2705
Bpu1102I	GCTNAGC	3 cut(s)	111, 646, 2054
Bpu14I	TTCGAA	1 cut(s)	1765
BpuEI	CTTGAG	3 cut(s)	887, 1926, 2402
Bsa29I	ATCGAT	1 cut(s)	2242
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 1505
Bse1I	ACTGG	6 cut(s)	36, 326, 774, 1227, 1564, 2152
Bse21I	CCTNAGG	1 cut(s)	983
Bse3DI	GCAATG	2 cut(s)	2508, 2933
BseAI	TCCGGA	1 cut(s)	309
BseBI	CCWGG	4 cut(s)	232, 920, 1124, 2826
BseCI	ATCGAT	1 cut(s)	2242
BseGI	GGATG	3 cut(s)	1021, 2154, 2738
BseLI	CCNNNNNNNGG	2 cut(s)	518, 1505
BseMI	GCAATG	2 cut(s)	2508, 2933
BseMII	CTCAG	6 cut(s)	130, 176, 565, 660, 1833, 2045
BseNI	ACTGG	6 cut(s)	36, 326, 774, 1227, 1564, 2152
BseRI	GAGGAG	2 cut(s)	38, 2131
BseSI	GKGCMC	1 cut(s)	666
BseXI	GCAGC	4 cut(s)	463, 990, 1105, 2514
BseYI	CCCAGC	1 cut(s)	812
BsgI	GTGCAG	1 cut(s)	997
BshFI	GGCC	3 cut(s)	1786, 1960, 2283
BshVI	ATCGAT	1 cut(s)	2242
BsiHKAI	GWGCWC	4 cut(s)	181, 666, 2252, 2795
BsiHKCI	CYCGRG	1 cut(s)	2794
BsiSI	CCGG	1 cut(s)	310
BslFI	GGGAC	5 cut(s)	861, 982, 1402, 2421, 2944
BslI	CCNNNNNNNGG	2 cut(s)	518, 1505
BsmAI	GTCTC	7 cut(s)	166, 912, 1563, 1882, 1987, 2645, 2667
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	5 cut(s)	861, 982, 1402, 2421, 2944
BsmI	GAATGC	2 cut(s)	716, 2304
BsnI	GGCC	3 cut(s)	1786, 1960, 2283
BsoBI	CYCGRG	1 cut(s)	2794
Bsp119I	TTCGAA	1 cut(s)	1765
Bsp1286I	GDGCHC	4 cut(s)	181, 666, 2252, 2795
Bsp13I	TCCGGA	1 cut(s)	309
Bsp1407I	TGTACA	3 cut(s)	1055, 1487, 2421
Bsp1720I	GCTNAGC	3 cut(s)	111, 646, 2054
Bsp19I	CCATGG	1 cut(s)	1645
BspACI	CCGC	4 cut(s)	280, 560, 2226, 2769
BspANI	GGCC	3 cut(s)	1786, 1960, 2283
BspCNI	CTCAG	6 cut(s)	129, 177, 564, 659, 1834, 2046
BspDI	ATCGAT	1 cut(s)	2242
BspEI	TCCGGA	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	1438
BspLI	GGNNCC	4 cut(s)	877, 1252, 1418, 1449
BspMAI	CTGCAG	2 cut(s)	105, 1146
BspPI	GGATC	4 cut(s)	157, 203, 642, 1747
BspT104I	TTCGAA	1 cut(s)	1765
BsrDI	GCAATG	2 cut(s)	2508, 2933
BsrGI	TGTACA	3 cut(s)	1055, 1487, 2421
BsrI	ACTGG	6 cut(s)	36, 326, 774, 1227, 1564, 2152
BssSI	CACGAG	3 cut(s)	1826, 2355, 2417
BssT1I	CCWWGG	6 cut(s)	943, 1412, 1645, 2278, 2514, 2908
Bst2BI	CACGAG	3 cut(s)	1826, 2355, 2417
Bst2UI	CCWGG	4 cut(s)	232, 920, 1124, 2826
Bst4CI	ACNGT	7 cut(s)	143, 690, 875, 1055, 1487, 1492, 1859
Bst6I	CTCTTC	3 cut(s)	232, 607, 1023
BstAUI	TGTACA	3 cut(s)	1055, 1487, 2421
BstBI	TTCGAA	1 cut(s)	1765
BstC8I	GCNNGC	1 cut(s)	1116
BstDSI	CCRYGG	1 cut(s)	1645
BstEII	GGTNACC	2 cut(s)	521, 1543
BstF5I	GGATG	3 cut(s)	1021, 2154, 2738
BstMAI	GTCTC	7 cut(s)	166, 912, 1563, 1882, 1987, 2645, 2667
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 1822
BstNI	CCWGG	4 cut(s)	232, 920, 1124, 2826
BstNSI	RCATGY	1 cut(s)	345
BstPAI	GACNNNNGTC	2 cut(s)	1414, 1894
BstPI	GGTNACC	2 cut(s)	521, 1543
BstSCI	CCNGG	4 cut(s)	230, 918, 1122, 2824
BstSFI	CTRYAG	2 cut(s)	101, 1142
BstSLI	GKGCMC	1 cut(s)	666
BstV1I	GCAGC	4 cut(s)	463, 990, 1105, 2514
BstV2I	GAAGAC	2 cut(s)	921, 1596
BstX2I	RGATCY	3 cut(s)	400, 634, 994
BstXI	CCANNNNNNTGG	3 cut(s)	1587, 1646, 1968
BstYI	RGATCY	3 cut(s)	400, 634, 994
Bsu15I	ATCGAT	1 cut(s)	2242
Bsu36I	CCTNAGG	1 cut(s)	983
BsuRI	GGCC	3 cut(s)	1786, 1960, 2283
BsuTUI	ATCGAT	1 cut(s)	2242
BtgI	CCRYGG	1 cut(s)	1645
BtgZI	GCGATG	1 cut(s)	2596
BtsCI	GGATG	3 cut(s)	1021, 2154, 2738
BtsIMutI	CAGTG	4 cut(s)	148, 319, 1220, 2106
Cac8I	GCNNGC	1 cut(s)	1116
CciI	TCATGA	1 cut(s)	1438
Cfr13I	GGNCC	6 cut(s)	875, 1225, 1251, 1416, 1496, 1784
ClaI	ATCGAT	1 cut(s)	2242
Csp6I	GTAC	8 cut(s)	339, 394, 1056, 1488, 1834, 1860, 2422, 2520
CviAII	CATG	8 cut(s)	156, 270, 342, 1439, 1646, 1885, 1947, 2952
CviQI	GTAC	8 cut(s)	339, 394, 1056, 1488, 1834, 1860, 2422, 2520
DraIII	CACNNNGTG	3 cut(s)	143, 145, 295
EaeI	YGGCCR	2 cut(s)	1958, 2281
Eam1104I	CTCTTC	3 cut(s)	232, 607, 1023
EarI	CTCTTC	3 cut(s)	232, 607, 1023
Eco130I	CCWWGG	6 cut(s)	943, 1412, 1645, 2278, 2514, 2908
Eco47I	GGWCC	5 cut(s)	875, 1225, 1251, 1416, 1496
Eco57I	CTGAAG	2 cut(s)	1374, 2511
Eco81I	CCTNAGG	1 cut(s)	983
Eco88I	CYCGRG	1 cut(s)	2794
Eco91I	GGTNACC	2 cut(s)	521, 1543
EcoO109I	RGGNCCY	2 cut(s)	1416, 1496
EcoO65I	GGTNACC	2 cut(s)	521, 1543
EcoRI	GAATTC	1 cut(s)	1934
EcoRII	CCWGG	4 cut(s)	230, 918, 1122, 2824
EcoT14I	CCWWGG	6 cut(s)	943, 1412, 1645, 2278, 2514, 2908
EcoT22I	ATGCAT	2 cut(s)	161, 2740
ErhI	CCWWGG	6 cut(s)	943, 1412, 1645, 2278, 2514, 2908
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	8 cut(s)	159, 273, 345, 1442, 1649, 1888, 1950, 2955
FalI	AAGNNNNNCTT	4 cut(s)	2143, 2175, 2378, 2410
FaqI	GGGAC	5 cut(s)	861, 982, 1402, 2421, 2944
FatI	CATG	8 cut(s)	155, 269, 341, 1438, 1645, 1884, 1946, 2951
FauNDI	CATATG	2 cut(s)	2176, 2341
FbaI	TGATCA	1 cut(s)	1804
Fnu4HI	GCNGC	4 cut(s)	452, 979, 1119, 2503
FokI	GGATG	3 cut(s)	1028, 2141, 2725
Fsp4HI	GCNGC	4 cut(s)	452, 979, 1119, 2503
GluI	GCNGC	4 cut(s)	452, 979, 1119, 2503
GsaI	CCCAGC	1 cut(s)	816
GsuI	CTGGAG	2 cut(s)	1950, 2705
HaeIII	GGCC	3 cut(s)	1786, 1960, 2283
HapII	CCGG	1 cut(s)	310
Hin1II	CATG	8 cut(s)	159, 273, 345, 1442, 1649, 1888, 1950, 2955
HincII	GTYRAC	2 cut(s)	331, 1291
HindII	GTYRAC	2 cut(s)	331, 1291
HindIII	AAGCTT	1 cut(s)	1652
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	5 cut(s)	137, 734, 1537, 2606, 2843
Hpy166II	GTNNAC	4 cut(s)	331, 664, 1291, 2422
Hpy188I	TCNGA	5 cut(s)	186, 709, 1843, 2188, 2696
Hpy8I	GTNNAC	4 cut(s)	331, 664, 1291, 2422
HpyCH4III	ACNGT	7 cut(s)	143, 690, 875, 1055, 1487, 1492, 1859
HpyCH4IV	ACGT	6 cut(s)	291, 1431, 1618, 1820, 2399, 2522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 1822
HpySE526I	ACGT	6 cut(s)	291, 1431, 1618, 1820, 2399, 2522
Hsp92II	CATG	8 cut(s)	159, 273, 345, 1442, 1649, 1888, 1950, 2955
Kpn2I	TCCGGA	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	1804
LmnI	GCTCC	2 cut(s)	1914, 2301
Lsp1109I	GCAGC	4 cut(s)	463, 990, 1105, 2514
LweI	GCATC	6 cut(s)	98, 666, 2163, 2725, 2747, 2898
MaeII	ACGT	6 cut(s)	291, 1431, 1618, 1820, 2399, 2522
MaeIII	GTNAC	7 cut(s)	202, 287, 521, 1074, 1543, 2199, 2357
MfeI	CAATTG	5 cut(s)	583, 1808, 1922, 2204, 3009
MflI	RGATCY	3 cut(s)	400, 634, 994
MhlI	GDGCHC	4 cut(s)	181, 666, 2252, 2795
MlsI	TGGCCA	2 cut(s)	1960, 2283
MluNI	TGGCCA	2 cut(s)	1960, 2283
MlyI	GAGTC	4 cut(s)	1082, 1460, 2354, 2425
MmeI	TCCRAC	2 cut(s)	993, 1113
Mox20I	TGGCCA	2 cut(s)	1960, 2283
Mph1103I	ATGCAT	2 cut(s)	161, 2740
MroI	TCCGGA	1 cut(s)	309
MroXI	GAANNNNTTC	2 cut(s)	729, 1043
MscI	TGGCCA	2 cut(s)	1960, 2283
MslI	CAYNNNNRTG	3 cut(s)	1966, 2747, 2764
Msp20I	TGGCCA	2 cut(s)	1960, 2283
MspA1I	CMGCKG	1 cut(s)	816
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	4 cut(s)	232, 920, 1124, 2826
MunI	CAATTG	5 cut(s)	583, 1808, 1922, 2204, 3009
Mva1269I	GAATGC	2 cut(s)	716, 2304
MvaI	CCWGG	4 cut(s)	232, 920, 1124, 2826
MwoI	GCNNNNNNNGC	2 cut(s)	279, 1822
NcoI	CCATGG	1 cut(s)	1645
NdeI	CATATG	2 cut(s)	2176, 2341
NlaIII	CATG	8 cut(s)	159, 273, 345, 1442, 1649, 1888, 1950, 2955
NlaIV	GGNNCC	4 cut(s)	877, 1252, 1418, 1449
NmuCI	GTSAC	4 cut(s)	287, 1074, 1543, 2357
NsiI	ATGCAT	2 cut(s)	161, 2740
NspI	RCATGY	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	1765
PagI	TCATGA	1 cut(s)	1438
PasI	CCCWGGG	1 cut(s)	1123
PciI	ACATGT	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	1007
PctI	GAATGC	2 cut(s)	716, 2304
PdmI	GAANNNNTTC	2 cut(s)	729, 1043
PfeI	GAWTC	6 cut(s)	505, 1128, 1846, 2629, 2701, 2973
PkrI	GCNGC	4 cut(s)	453, 980, 1120, 2504
PleI	GAGTC	4 cut(s)	1081, 1460, 2354, 2425
PpsI	GAGTC	4 cut(s)	1081, 1460, 2354, 2425
PpuMI	RGGWCCY	2 cut(s)	1416, 1496
PscI	ACATGT	1 cut(s)	341
PshAI	GACNNNNGTC	2 cut(s)	1414, 1894
PsiI	TTATAA	2 cut(s)	1704, 2682
Psp5II	RGGWCCY	2 cut(s)	1416, 1496
Psp6I	CCWGG	4 cut(s)	230, 918, 1122, 2824
PspEI	GGTNACC	2 cut(s)	521, 1543
PspFI	CCCAGC	1 cut(s)	812
PspGI	CCWGG	4 cut(s)	230, 918, 1122, 2824
PspN4I	GGNNCC	4 cut(s)	877, 1252, 1418, 1449
PspPI	GGNCC	6 cut(s)	875, 1225, 1251, 1416, 1496, 1784
PspPPI	RGGWCCY	2 cut(s)	1416, 1496
PstI	CTGCAG	2 cut(s)	105, 1146
PsuI	RGATCY	3 cut(s)	400, 634, 994
PvuII	CAGCTG	1 cut(s)	816
RsaI	GTAC	8 cut(s)	340, 395, 1057, 1489, 1835, 1861, 2423, 2521
RsaNI	GTAC	8 cut(s)	339, 394, 1056, 1488, 1834, 1860, 2422, 2520
RseI	CAYNNNNRTG	3 cut(s)	1966, 2747, 2764
SatI	GCNGC	4 cut(s)	452, 979, 1119, 2503
Sau96I	GGNCC	6 cut(s)	875, 1225, 1251, 1416, 1496, 1784
SchI	GAGTC	4 cut(s)	1082, 1460, 2354, 2425
ScrFI	CCNGG	4 cut(s)	232, 920, 1124, 2826
SduI	GDGCHC	4 cut(s)	181, 666, 2252, 2795
SfaNI	GCATC	6 cut(s)	98, 666, 2163, 2725, 2747, 2898
SfcI	CTRYAG	2 cut(s)	101, 1142
SfuI	TTCGAA	1 cut(s)	1765
SinI	GGWCC	5 cut(s)	875, 1225, 1251, 1416, 1496
SmiMI	CAYNNNNRTG	3 cut(s)	1966, 2747, 2764
SmlI	CTYRAG	3 cut(s)	902, 1941, 2381
SmoI	CTYRAG	3 cut(s)	902, 1941, 2381
SpeI	ACTAGT	1 cut(s)	1534
SsiI	CCGC	4 cut(s)	280, 560, 2226, 2769
StyD4I	CCNGG	4 cut(s)	230, 918, 1122, 2824
StyI	CCWWGG	6 cut(s)	943, 1412, 1645, 2278, 2514, 2908
TaaI	ACNGT	7 cut(s)	143, 690, 875, 1055, 1487, 1492, 1859
TaiI	ACGT	6 cut(s)	294, 1434, 1621, 1823, 2402, 2525
TaqI	TCGA	7 cut(s)	253, 1751, 1758, 1765, 2242, 2971, 2979
TaqII	GACCGA	1 cut(s)	1422
TatI	WGTACW	4 cut(s)	338, 1055, 1487, 2421
TfiI	GAWTC	6 cut(s)	505, 1128, 1846, 2629, 2701, 2973
TscAI	CASTG	4 cut(s)	148, 326, 1227, 2113
TseFI	GTSAC	4 cut(s)	287, 1074, 1543, 2357
TseI	GCWGC	4 cut(s)	451, 978, 1118, 2502
Tsp45I	GTSAC	4 cut(s)	287, 1074, 1543, 2357
TspRI	CASTG	4 cut(s)	148, 326, 1227, 2113
VneI	GTGCAC	1 cut(s)	662
VpaK11BI	GGWCC	5 cut(s)	875, 1225, 1251, 1416, 1496
XapI	RAATTY	5 cut(s)	361, 951, 1678, 1934, 2079
XbaI	TCTAGA	2 cut(s)	616, 853
XceI	RCATGY	1 cut(s)	345
XmaJI	CCTAGG	2 cut(s)	1412, 2908
XmnI	GAANNNNTTC	2 cut(s)	729, 1043
Zsp2I	ATGCAT	2 cut(s)	161, 2740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.