Rw5G031860

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
53114562 .. 53115908
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G031860.1

Sequence Viewer

Length: 1347 bp
ATGACGTCACCTAGTTTAGGATCACCTTGGCAAAGAGAACTCAAATCCGAGGAGCGGGGTCTGTGTTTGATCCACTTGTTGCTCACTTGTGCAAATTATGTTGCTGCGGGAAACCTCGAAAATGCAAATATTGCCCTTGAGCAAATCTCCCTGCTTGCCTCTTCGGATGGTGATACCATGCAGCGGATTGCAGCCTACTTCACTGAGGCTCTTGCTGACCGAATCCTCAAAGCTTGGCGTGGTCTTTATAAGGCCCTATATTCCACTAGAATATATTCAGTTTCTGAAGAATTTCTAGTTCGGAAAGTGTTCTTTGAGATGCTTCCATTCCTAAAGGTGGCTTATGTGCTCACAAACCAAGCTATTATTGAAGCCATGGAAGAAGAAAAGATGGTCCATATAATTGACCTTTATTCATCTGAACCTGCACAGTGGATAGCTCTTCTTCATGCTTTAAGTGCAAGGCCTGAGGGTCCACCTCATTTGAGAATTACCGGTGTCCATCAACAAAAAGAAGTACTAGATCAAATGGCTCATAGCTTGACTGAAGAAGCGGAAAGATTGGATACTCCATTTCAGTTCAATCCCGTAGTCAGCAAGTTGGAAACACTTGATTTTGAAAAGCTCCATGTTAAAACCGGTGAGGCTCTAGCTATCAGCTCAGTTCTCCAATTTCACTCCCTCTTGTCATCTGATGATGATTTCCATAGAAAGAAATTCTCATTGGAATCAAAGAATCGAAATAGAGTTCACTCACCTGGAGTGTTGCAAATGGCCCAAGGCACATTGGGTGAGTTGCTAGAGAAAGATATGGGCAAGGGATATAGCCCCAGTCCTGACTCAACCTCGTCATCGCCACTATCCCCAGTTGGTTCTGTGAAGATGGACAGCTTTCTTAATGCATTTTGGGGTTTGACACCGAAGATCATGGTAGTTACCGAACAAGATTCCAACCATAATGGCTCCACTCTAATGGAGAGGCTATTCGAAGCTTTATACTCGTATGCTGCATTATTTGATTGCTTGGAGTCTACGATGTCAAGAACTTCCTTGGAAAGAATGAAGGTAGAGAAAATGCTATTTGGGGAGGAAATTAAAAACATTATAGCTTGTGAAGGATCTGAGAGGAAAGAAAGACATGAAAAACTTGAGAAGTGGATTCAAAGGCTCGATTTAGCTGGCTTTGGAAATGTACCTTTGAGCTATTATGGTATGCTTCAGGCAAGGAAGTTGTTGCAGGGTTATGGTTGTGATGGATATAGGATCAGGGAAGAGAATGGCTGTGTGTTGATGTCGTGGCAAGATCGACCCCTATTTTCTGTCTCAGCTTGGAGATGCAGGAAGTAG

Protein Analysis

448

Amino Acids

50.75

Weight (kDa)

5.91

Isoelectric Point (pI)

45.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 23 - 445 4.4e-120 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 55
AccI GTMKAC 1 cut(s) 1031
AciI CCGC 4 cut(s) 55, 107, 184, 554
AclWI GGATC 4 cut(s) 28, 64, 1126, 1271
AcsI RAATTY 2 cut(s) 290, 716
AcuI CTGAAG 3 cut(s) 306, 567, 1202
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 519, 1194
AfiI CCNNNNNNNGG 4 cut(s) 17, 54, 183, 337
AgeI ACCGGT 2 cut(s) 494, 638
AgsI TTSAA 4 cut(s) 371, 583, 620, 1163
AjnI CCWGG 1 cut(s) 757
AjuI GAANNNNNNNTTGG 2 cut(s) 707, 739
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 1327
AlwI GGATC 4 cut(s) 28, 64, 1126, 1271
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 3 cut(s) 252, 464, 774
ApeKI GCWGC 4 cut(s) 104, 181, 191, 1007
ApoI RAATTY 2 cut(s) 290, 716
AsiGI ACCGGT 2 cut(s) 494, 638
Asp700I GAANNNNTTC 3 cut(s) 274, 291, 308
AspS9I GGNCC 4 cut(s) 253, 394, 473, 775
AsuHPI GGTGA 5 cut(s) 15, 182, 653, 747, 803
AsuII TTCGAA 1 cut(s) 987
AvaII GGWCC 2 cut(s) 394, 473
AxyI CCTNAGG 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 4 cut(s) 91, 193, 203, 994
BccI CCATC 5 cut(s) 161, 385, 510, 877, 1247
BciT130I CCWGG 1 cut(s) 759
BciVI GTATCC 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 1327
BfaI CTAG 6 cut(s) 12, 267, 296, 521, 650, 800
BfuAI ACCTGC 1 cut(s) 433
BfuI GTATCC 1 cut(s) 559
BisI GCNGC 4 cut(s) 105, 182, 192, 1008
BlsI GCNGC 4 cut(s) 106, 183, 193, 1009
BmcAI AGTACT 1 cut(s) 519
Bme1390I CCNGG 1 cut(s) 759
Bme18I GGWCC 2 cut(s) 394, 473
BmgT120I GGNCC 4 cut(s) 253, 394, 473, 775
BmiI GGNNCC 2 cut(s) 474, 964
BmrFI CCNGG 1 cut(s) 759
BmrI ACTGGG 2 cut(s) 825, 860
BmsI GCATC 2 cut(s) 309, 1325
BmuI ACTGGG 2 cut(s) 825, 860
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 1 cut(s) 780
Bpu14I TTCGAA 1 cut(s) 987
BpuEI CTTGAG 2 cut(s) 158, 1169
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 26, 48, 375, 778, 1050
BsaWI WCCGGW 2 cut(s) 494, 638
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 54, 183, 337
Bse118I RCCGGY 2 cut(s) 494, 638
Bse1I ACTGG 2 cut(s) 831, 866
Bse21I CCTNAGG 1 cut(s) 468
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 5 cut(s) 26, 48, 375, 778, 1050
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 4 cut(s) 17, 54, 183, 337
BseMII CTCAG 5 cut(s) 195, 459, 675, 1113, 1338
BseNI ACTGG 2 cut(s) 831, 866
BseRI GAGGAG 1 cut(s) 65
BseXI GCAGC 4 cut(s) 91, 193, 203, 994
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 3 cut(s) 254, 466, 776
BshTI ACCGGT 2 cut(s) 494, 638
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 2 cut(s) 495, 639
BslI CCNNNNNNNGG 4 cut(s) 17, 54, 183, 337
BsmAI GTCTC 1 cut(s) 1327
BsnI GGCC 3 cut(s) 254, 466, 776
Bsp119I TTCGAA 1 cut(s) 987
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 7 cut(s) 20, 69, 523, 924, 1118, 1263, 1303
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 4 cut(s) 55, 107, 184, 554
BspANI GGCC 3 cut(s) 254, 466, 776
BspCNI CTCAG 5 cut(s) 196, 460, 674, 1114, 1337
BspLI GGNNCC 2 cut(s) 474, 964
BspMI ACCTGC 1 cut(s) 433
BspPI GGATC 4 cut(s) 28, 64, 1126, 1271
BspQI GCTCTTC 1 cut(s) 447
BspT104I TTCGAA 1 cut(s) 987
BsrBI CCGCTC 1 cut(s) 55
BsrFI RCCGGY 2 cut(s) 494, 638
BsrI ACTGG 2 cut(s) 831, 866
BssAI RCCGGY 2 cut(s) 494, 638
BssECI CCNNGG 5 cut(s) 26, 48, 375, 778, 1050
BssMI GATC 7 cut(s) 20, 69, 523, 924, 1118, 1263, 1303
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 4 cut(s) 26, 375, 778, 1050
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 1 cut(s) 432
Bst6I CTCTTC 3 cut(s) 166, 447, 1266
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 987
BstC8I GCNNGC 2 cut(s) 156, 1180
BstDEI CTNAG 5 cut(s) 204, 468, 661, 1122, 1324
BstDSI CCRYGG 1 cut(s) 375
BstENI CCTNNNNNAGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 7 cut(s) 23, 72, 526, 927, 1121, 1266, 1306
BstMAI GTCTC 1 cut(s) 1327
BstMBI GATC 7 cut(s) 20, 69, 523, 924, 1118, 1263, 1303
BstMWI GCNNNNNNNGC 2 cut(s) 131, 458
BstNI CCWGG 1 cut(s) 759
BstSCI CCNGG 1 cut(s) 757
BstV1I GCAGC 4 cut(s) 91, 193, 203, 994
BstX2I RGATCY 1 cut(s) 1118
BstXI CCANNNNNNTGG 1 cut(s) 973
BstYI RGATCY 1 cut(s) 1118
Bsu36I CCTNAGG 1 cut(s) 468
BsuI GTATCC 1 cut(s) 559
BsuRI GGCC 3 cut(s) 254, 466, 776
BtgI CCRYGG 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 837
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 201, 437
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 2 cut(s) 156, 1180
CaiI CAGNNNCTG 1 cut(s) 284
Cfr10I RCCGGY 2 cut(s) 494, 638
Cfr13I GGNCC 4 cut(s) 253, 394, 473, 775
Csp6I GTAC 2 cut(s) 518, 1193
CspAI ACCGGT 2 cut(s) 494, 638
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 6 cut(s) 178, 376, 449, 629, 928, 1139
CviQI GTAC 2 cut(s) 518, 1193
DdeI CTNAG 5 cut(s) 204, 468, 661, 1122, 1324
DpnI GATC 7 cut(s) 22, 71, 525, 926, 1120, 1265, 1305
DpnII GATC 7 cut(s) 20, 69, 523, 924, 1118, 1263, 1303
Eam1104I CTCTTC 3 cut(s) 166, 447, 1266
EarI CTCTTC 3 cut(s) 166, 447, 1266
Eco130I CCWWGG 4 cut(s) 26, 375, 778, 1050
Eco147I AGGCCT 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 394, 473
Eco57I CTGAAG 3 cut(s) 306, 567, 1202
Eco81I CCTNAGG 1 cut(s) 468
EcoNI CCTNNNNNAGG 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 757
EcoT14I CCWWGG 4 cut(s) 26, 375, 778, 1050
EcoT22I ATGCAT 1 cut(s) 904
ErhI CCWWGG 4 cut(s) 26, 375, 778, 1050
FaeI CATG 6 cut(s) 181, 379, 452, 632, 931, 1142
FatI CATG 6 cut(s) 177, 375, 448, 628, 927, 1138
FauI CCCGC 2 cut(s) 48, 100
FblI GTMKAC 1 cut(s) 1031
Fnu4HI GCNGC 4 cut(s) 105, 182, 192, 1008
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 4 cut(s) 105, 182, 192, 1008
FspBI CTAG 6 cut(s) 12, 267, 296, 521, 650, 800
GluI GCNGC 4 cut(s) 105, 182, 192, 1008
GsuI CTGGAG 1 cut(s) 780
HaeIII GGCC 3 cut(s) 254, 466, 776
HapII CCGG 2 cut(s) 495, 639
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 181, 379, 452, 632, 931, 1142
HindIII AAGCTT 2 cut(s) 231, 990
HinfI GANTC 7 cut(s) 222, 728, 736, 839, 947, 1028, 1159
HpaII CCGG 2 cut(s) 495, 639
HphI GGTGA 5 cut(s) 15, 182, 653, 747, 803
Hpy166II GTNNAC 3 cut(s) 476, 751, 1032
Hpy188I TCNGA 7 cut(s) 49, 166, 286, 303, 421, 694, 1123
Hpy188III TCNNGA 2 cut(s) 836, 1041
Hpy8I GTNNAC 3 cut(s) 476, 751, 1032
HpyAV CCTTC 2 cut(s) 1057, 1109
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 458
HpyF3I CTNAG 5 cut(s) 204, 468, 661, 1122, 1324
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 181, 379, 452, 632, 931, 1142
Kzo9I GATC 7 cut(s) 20, 69, 523, 924, 1118, 1263, 1303
LguI GCTCTTC 1 cut(s) 447
LmnI GCTCC 3 cut(s) 52, 630, 968
Lsp1109I GCAGC 4 cut(s) 91, 193, 203, 994
LweI GCATC 2 cut(s) 309, 1325
MaeI CTAG 6 cut(s) 12, 267, 296, 521, 650, 800
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 2 cut(s) 6, 934
MalI GATC 7 cut(s) 22, 71, 525, 926, 1120, 1265, 1305
MbiI CCGCTC 1 cut(s) 55
MboI GATC 7 cut(s) 20, 69, 523, 924, 1118, 1263, 1303
MflI RGATCY 1 cut(s) 1118
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 7 cut(s) 94, 290, 402, 489, 671, 716, 1092
MlyI GAGTC 2 cut(s) 833, 1037
MmeI TCCRAC 2 cut(s) 582, 975
Mph1103I ATGCAT 1 cut(s) 904
MroXI GAANNNNTTC 3 cut(s) 274, 291, 308
MseI TTAA 4 cut(s) 455, 633, 897, 1095
MslI CAYNNNNRTG 1 cut(s) 971
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 2 cut(s) 495, 639
MspR9I CCNGG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 759
MwoI GCNNNNNNNGC 2 cut(s) 131, 458
NcoI CCATGG 1 cut(s) 375
NdeII GATC 7 cut(s) 20, 69, 523, 924, 1118, 1263, 1303
NlaIII CATG 6 cut(s) 181, 379, 452, 632, 931, 1142
NlaIV GGNNCC 2 cut(s) 474, 964
NmuCI GTSAC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 904
NspV TTCGAA 1 cut(s) 987
PceI AGGCCT 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 447
PdmI GAANNNNTTC 3 cut(s) 274, 291, 308
PfeI GAWTC 5 cut(s) 222, 728, 736, 947, 1159
PinAI ACCGGT 2 cut(s) 494, 638
PkrI GCNGC 4 cut(s) 106, 183, 193, 1009
PleI GAGTC 2 cut(s) 833, 1036
PpsI GAGTC 2 cut(s) 833, 1036
PsiI TTATAA 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 757
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 2 cut(s) 474, 964
PspPI GGNCC 4 cut(s) 253, 394, 473, 775
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 1118
RsaI GTAC 2 cut(s) 519, 1194
RsaNI GTAC 2 cut(s) 518, 1193
RseI CAYNNNNRTG 1 cut(s) 971
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 4 cut(s) 455, 633, 897, 1095
SatI GCNGC 4 cut(s) 105, 182, 192, 1008
Sau3AI GATC 7 cut(s) 20, 69, 523, 924, 1118, 1263, 1303
Sau96I GGNCC 4 cut(s) 253, 394, 473, 775
ScaI AGTACT 1 cut(s) 519
SchI GAGTC 2 cut(s) 833, 1037
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 2 cut(s) 309, 1325
SfuI TTCGAA 1 cut(s) 987
SinI GGWCC 2 cut(s) 394, 473
SmiMI CAYNNNNRTG 1 cut(s) 971
SmlI CTYRAG 2 cut(s) 137, 1148
SmoI CTYRAG 2 cut(s) 137, 1148
Sse9I AATT 7 cut(s) 94, 290, 402, 489, 671, 716, 1092
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 4 cut(s) 55, 107, 184, 554
SspI AATATT 1 cut(s) 130
SspMI CTAG 6 cut(s) 12, 267, 296, 521, 650, 800
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 4 cut(s) 26, 375, 778, 1050
TaaI ACNGT 1 cut(s) 432
TaiI ACGT 1 cut(s) 8
TaqI TCGA 5 cut(s) 117, 739, 987, 1170, 1306
TaqII GACCGA 1 cut(s) 234
TasI AATT 7 cut(s) 94, 290, 402, 489, 671, 716, 1092
TatI WGTACW 1 cut(s) 517
TfiI GAWTC 5 cut(s) 222, 728, 736, 947, 1159
Tru1I TTAA 4 cut(s) 455, 633, 897, 1095
Tru9I TTAA 4 cut(s) 455, 633, 897, 1095
TscAI CASTG 2 cut(s) 208, 437
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 4 cut(s) 104, 181, 191, 1007
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 4 cut(s) 405, 437, 1076, 1155
TspRI CASTG 2 cut(s) 208, 437
VpaK11BI GGWCC 2 cut(s) 394, 473
XagI CCTNNNNNAGG 1 cut(s) 15
XapI RAATTY 2 cut(s) 290, 716
XmiI GTMKAC 1 cut(s) 1031
XmnI GAANNNNTTC 3 cut(s) 274, 291, 308
XspI CTAG 6 cut(s) 12, 267, 296, 521, 650, 800
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 519
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.