Rorug01G0028900

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001537
Physical Location & Seq
Reverse (-)
4895048 .. 4898683
3636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0028900.1

Sequence Viewer

Length: 516 bp
ATGATGACACGACTCTCCAGAACATTCCCTTCCGTAAAGCTCCCAAACCCTCACCCCTCCTCAATTCTATTACCATGTTCAACATCACTACCCAATATCAAATCAGAAGCAAAATTGAATTCTCCCTCAAAATCGAGGTCTTGGTCTGTGTACCTCATCCTTTCCACCAATGCACCCATCAAGACCTACGTTGGTGTCACCACCGATTTCTCTCGCCGTCTGAAACAACACAATGGTGAACTAAAAGGTGGGGCAAAGGCATCCCATGCTGGAAGACCATGGATTTGTGCGTGCCTAATACATGGTTTCAAGGACCAAAATGAAGCATGTGCATTTGAATCAAAATGGAAAACTTTATCAAGGAGTTTGCCTCGCAAAAGAAAGGACGATAACAAGGTAGAGCAAGTAAATGATTTGTCGCGTCCTCTACTACAACATAGGCAAGCAGCTCTAAATAGAGTTAAAGGTTCTTTGGTGGGTGGAAGAGATGTAGCTTCATTTCCCTGCAACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

171

Amino Acids

19.01

Weight (kDa)

10.27

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIY-YIG PF01541 48 - 122 1.6e-14 GIY-YIG catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 421
AcsI RAATTY 1 cut(s) 118
AfaI GTAC 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 4 cut(s) 81, 118, 310, 338
AleI CACNNNNGTG 1 cut(s) 234
AluBI AGCT 3 cut(s) 40, 449, 494
AluI AGCT 3 cut(s) 40, 449, 494
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 118
ArsI GACNNNNNNTTYG 4 cut(s) 122, 154, 267, 299
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 44, 190, 248
AvaII GGWCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 458
BccI CCATC 1 cut(s) 185
BceAI ACGGC 1 cut(s) 201
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 313
BmsI GCATC 1 cut(s) 269
BpiI GAAGAC 1 cut(s) 280
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BsaJI CCNNGG 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 156, 260
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 421
Bsp19I CCATGG 1 cut(s) 278
BspFNI CGCG 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 478
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 292, 444
BstDSI CCRYGG 1 cut(s) 278
BstF5I GGATG 2 cut(s) 156, 260
BstFNI CGCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNSI RCATGY 2 cut(s) 330, 514
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 458
BstV2I GAAGAC 1 cut(s) 280
BtgI CCRYGG 1 cut(s) 278
BtsCI GGATG 2 cut(s) 156, 260
Cac8I GCNNGC 2 cut(s) 292, 444
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 410
Csp6I GTAC 1 cut(s) 151
CviAII CATG 6 cut(s) 75, 266, 279, 302, 327, 511
CviJI RGCY 3 cut(s) 40, 449, 494
CviKI_1 RGCY 3 cut(s) 40, 449, 494
CviQI GTAC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 313
EcoRI GAATTC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 6 cut(s) 78, 269, 282, 305, 330, 514
FaiI YATR 7 cut(s) 76, 267, 280, 303, 328, 438, 512
FatI CATG 6 cut(s) 74, 265, 278, 301, 326, 510
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 2 cut(s) 143, 247
Fsp4HI GCNGC 1 cut(s) 447
GluI GCNGC 1 cut(s) 447
HgaI GACGC 1 cut(s) 410
Hin1II CATG 6 cut(s) 78, 269, 282, 305, 330, 514
HinfI GANTC 2 cut(s) 12, 338
HphI GGTGA 3 cut(s) 44, 190, 248
Hpy166II GTNNAC 2 cut(s) 151, 239
Hpy188I TCNGA 2 cut(s) 106, 222
Hpy188III TCNNGA 2 cut(s) 18, 181
Hpy8I GTNNAC 2 cut(s) 151, 239
HpyAV CCTTC 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 173, 332, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 6 cut(s) 78, 269, 282, 305, 330, 514
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 2 cut(s) 31, 255
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 1 cut(s) 269
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 196
MboII GAAGA 2 cut(s) 285, 495
MluCI AATT 3 cut(s) 63, 113, 118
MlyI GAGTC 1 cut(s) 6
MnlI CCTC 8 cut(s) 60, 67, 70, 129, 136, 164, 381, 435
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 234
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 1 cut(s) 266
NcoI CCATGG 1 cut(s) 278
NlaIII CATG 6 cut(s) 78, 269, 282, 305, 330, 514
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 2 cut(s) 330, 514
OliI CACNNNNGTG 1 cut(s) 234
PciI ACATGT 1 cut(s) 510
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 1 cut(s) 448
PleI GAGTC 1 cut(s) 6
PpsI GAGTC 1 cut(s) 6
PscI ACATGT 1 cut(s) 510
PspPI GGNCC 1 cut(s) 313
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 1 cut(s) 447
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 1 cut(s) 6
SfaNI GCATC 1 cut(s) 269
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 3 cut(s) 63, 113, 118
StyI CCWWGG 1 cut(s) 278
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 134
TasI AATT 3 cut(s) 63, 113, 118
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 446
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 336, 486
TspGWI ACGGA 1 cut(s) 22
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 118
XceI RCATGY 2 cut(s) 330, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.