Rh5BG488800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001537
Physical Location & Seq
Reverse (-)
77848204 .. 77848708
505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG488800.1

Sequence Viewer

Length: 372 bp
ATGTTGGAGGAGATTTTCCATATCGAACCAAATTTCGGCCAGAATTTCATAATTTCGCAGACCTTTGTCTACGGAACCGTAGAGGGAGTTGTTGGAGAGGTCGAGGTTATGGATACAGTGGTGGGATGGGTTCTAAATCGAGCACCAAGTCGGCAATTGGAATTGGGATACAGTTTGTTTTTTGAATCATATAATGGGGGAGGAGTCGTGGGAGTGGCGGCCGACAAGGGATTGGGAGTGGTGAGGGGAGTCAACTGGGCTGAGGATGGGGTTGGACTGAAAAGACGTGGTGGTCTTCTTGCCGTTGTGGGAGTCGCAGGAGGGGCTTTGGATGTAGTAGATTGGGCGAGAAGGGAATCGGGTCGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.1

Weight (kDa)

4.77

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 291
AccI GTMKAC 1 cut(s) 69
AciI CCGC 1 cut(s) 218
AcoI YGGCCR 2 cut(s) 37, 219
AcsI RAATTY 2 cut(s) 31, 43
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 185
AjiI CACGTC 1 cut(s) 287
Alw21I GWGCWC 1 cut(s) 145
AoxI GGCC 2 cut(s) 37, 219
ApoI RAATTY 2 cut(s) 31, 43
AsuHPI GGTGA 1 cut(s) 253
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BbsI GAAGAC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 145
BbvCI CCTCAGC 1 cut(s) 261
BccI CCATC 2 cut(s) 120, 260
BceAI ACGGC 1 cut(s) 287
BciVI GTATCC 2 cut(s) 106, 161
BfuI GTATCC 2 cut(s) 106, 161
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 265
BoxI GACNNNNGTC 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 261
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 260
BseGI GGATG 3 cut(s) 131, 271, 337
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 2 cut(s) 23, 216
BseX3I CGGCCG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 39, 221
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 2 cut(s) 39, 221
Bsp1286I GDGCHC 1 cut(s) 145
BspACI CCGC 1 cut(s) 218
BspANI GGCC 2 cut(s) 39, 221
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 76
BsrI ACTGG 1 cut(s) 260
Bst4CI ACNGT 3 cut(s) 79, 118, 173
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 3 cut(s) 131, 271, 337
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstPAI GACNNNNGTC 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 287
BstZI CGGCCG 1 cut(s) 219
BsuI GTATCC 2 cut(s) 106, 161
BsuRI GGCC 2 cut(s) 39, 221
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 3 cut(s) 131, 271, 337
BtsIMutI CAGTG 1 cut(s) 123
CviJI RGCY 4 cut(s) 39, 221, 260, 326
CviKI_1 RGCY 4 cut(s) 39, 221, 260, 326
DdeI CTNAG 1 cut(s) 261
DrdI GACNNNNNNGTC 1 cut(s) 291
DseDI GACNNNNNNGTC 1 cut(s) 291
EaeI YGGCCR 2 cut(s) 37, 219
EagI CGGCCG 1 cut(s) 219
EclXI CGGCCG 1 cut(s) 219
Eco52I CGGCCG 1 cut(s) 219
FaiI YATR 5 cut(s) 21, 50, 110, 190, 192
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 3 cut(s) 138, 278, 344
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 2 cut(s) 39, 221
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 5 cut(s) 185, 204, 249, 312, 356
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 70, 253
Hpy8I GTNNAC 2 cut(s) 70, 253
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 3 cut(s) 79, 118, 173
HpyCH4IV ACGT 1 cut(s) 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 286
LpnPI CCDG 3 cut(s) 53, 241, 303
MaeII ACGT 1 cut(s) 286
MboII GAAGA 1 cut(s) 287
MfeI CAATTG 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 5 cut(s) 31, 43, 51, 155, 161
MlyI GAGTC 3 cut(s) 213, 258, 321
MmeI TCCRAC 2 cut(s) 73, 253
MnlI CCTC 7 cut(s) 76, 91, 97, 194, 237, 256, 314
MunI CAATTG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 185, 356
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 3 cut(s) 212, 257, 320
PpsI GAGTC 3 cut(s) 212, 257, 320
PshAI GACNNNNGTC 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 76
SatI GCNGC 1 cut(s) 219
SchI GAGTC 3 cut(s) 213, 258, 321
SduI GDGCHC 1 cut(s) 145
SetI ASST 4 cut(s) 65, 102, 108, 289
Sse9I AATT 5 cut(s) 31, 43, 51, 155, 161
SsiI CCGC 1 cut(s) 218
TaaI ACNGT 3 cut(s) 79, 118, 173
TaiI ACGT 1 cut(s) 289
TaqI TCGA 3 cut(s) 24, 102, 139
TasI AATT 5 cut(s) 31, 43, 51, 155, 161
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 2 cut(s) 185, 356
TscAI CASTG 1 cut(s) 123
TspDTI ATGAA 1 cut(s) 37
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 123
XapI RAATTY 2 cut(s) 31, 43
XmiI GTMKAC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.