Rh3DG265400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001537
Physical Location & Seq
Forward (+)
26452676 .. 26458381
5706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG265400.1

Sequence Viewer

Length: 312 bp
ATGGCCCAAGTTAGCATTTCCAGGGCTTTCTTCTTTGTCCAGATCTTAGTCTTGGCCCTTGTCGCTGCATCCGTCTCTGCTCAGGAGGGTTCTCCGGCACCAGCACCCGCGCCCATGGACGCCGGAGCGGCTTACTCGCTGCCGGTGCTGGTCTTAGTCCTCGCGGCCGCAACTGTCTCGGCTCAGGAGAGCGCTCCGGCACCGGCTCCCATGGATGCTGGAGCGGCTTACTCTTTGCCGGTCAATGGTGTGGTTATTGGAGCCTCGATTGCGGTCTCATTCTTCTCCTTGTTCAAGCACTTCTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.3

Weight (kDa)

4.75

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 97, 199
AccBSI CCGCTC 2 cut(s) 128, 224
AccII CGCG 2 cut(s) 110, 164
AciI CCGC 6 cut(s) 108, 128, 164, 168, 224, 272
AcoI YGGCCR 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 120
AfeI AGCGCT 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 295, 307
AjnI CCWGG 1 cut(s) 20
Alw26I GTCTC 3 cut(s) 79, 181, 280
Aor51HI AGCGCT 1 cut(s) 193
AoxI GGCC 3 cut(s) 3, 54, 165
ApeKI GCWGC 2 cut(s) 65, 139
AspLEI GCGC 2 cut(s) 112, 194
AspS9I GGNCC 2 cut(s) 4, 55
BanI GGYRCC 2 cut(s) 97, 199
BbvI GCAGC 2 cut(s) 52, 126
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 3 cut(s) 79, 181, 280
BfoI RGCGCY 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 128
BglII AGATCT 1 cut(s) 42
BisI GCNGC 6 cut(s) 66, 129, 140, 165, 168, 225
BlsI GCNGC 6 cut(s) 67, 130, 141, 166, 169, 226
Bme1390I CCNGG 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 4, 55
BmiI GGNNCC 4 cut(s) 99, 201, 207, 262
BmrFI CCNGG 1 cut(s) 22
BmsI GCATC 2 cut(s) 77, 205
BpmI CTGGAG 1 cut(s) 240
Bpu10I CCTNAGC 2 cut(s) 81, 183
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 3 cut(s) 21, 114, 210
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 3 cut(s) 142, 202, 238
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 3 cut(s) 21, 114, 210
BseGI GGATG 2 cut(s) 68, 220
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 2 cut(s) 95, 197
BseX3I CGGCCG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 52, 126
Bsh1236I CGCG 2 cut(s) 110, 164
Bsh1285I CGRYCG 1 cut(s) 168
BshFI GGCC 3 cut(s) 5, 56, 167
BshNI GGYRCC 2 cut(s) 97, 199
BsiEI CGRYCG 1 cut(s) 168
BsiSI CCGG 6 cut(s) 95, 123, 143, 197, 203, 239
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 3 cut(s) 79, 181, 280
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 3 cut(s) 5, 56, 167
Bso31I GGTCTC 1 cut(s) 280
Bsp143I GATC 1 cut(s) 42
Bsp19I CCATGG 2 cut(s) 114, 210
BspACI CCGC 6 cut(s) 108, 128, 164, 168, 224, 272
BspANI GGCC 3 cut(s) 5, 56, 167
BspCNI CTCAG 2 cut(s) 94, 196
BspFNI CGCG 2 cut(s) 110, 164
BspLI GGNNCC 4 cut(s) 99, 201, 207, 262
BspT107I GGYRCC 2 cut(s) 97, 199
BspTNI GGTCTC 1 cut(s) 280
BsrBI CCGCTC 2 cut(s) 128, 224
BsrFI RCCGGY 3 cut(s) 142, 202, 238
BssAI RCCGGY 3 cut(s) 142, 202, 238
BssECI CCNNGG 3 cut(s) 21, 114, 210
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 114, 210
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 175
BstACI GRCGYC 1 cut(s) 120
BstDEI CTNAG 4 cut(s) 46, 81, 154, 183
BstDSI CCRYGG 2 cut(s) 114, 210
BstF5I GGATG 2 cut(s) 68, 220
BstFNI CGCG 2 cut(s) 110, 164
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 112, 194
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 3 cut(s) 79, 181, 280
BstMBI GATC 1 cut(s) 42
BstMCI CGRYCG 1 cut(s) 168
BstMWI GCNNNNNNNGC 5 cut(s) 62, 128, 145, 224, 269
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstUI CGCG 2 cut(s) 110, 164
BstV1I GCAGC 2 cut(s) 52, 126
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BstZI CGGCCG 1 cut(s) 165
BsuRI GGCC 3 cut(s) 5, 56, 167
BtgI CCRYGG 2 cut(s) 114, 210
BtsCI GGATG 2 cut(s) 68, 220
CciNI GCGGCCGC 1 cut(s) 165
CfoI GCGC 2 cut(s) 112, 194
Cfr10I RCCGGY 3 cut(s) 142, 202, 238
Cfr13I GGNCC 2 cut(s) 4, 55
CseI GACGC 1 cut(s) 128
CviAII CATG 2 cut(s) 115, 211
CviJI RGCY 9 cut(s) 5, 26, 56, 131, 167, 182, 206, 227, 263
CviKI_1 RGCY 9 cut(s) 5, 26, 56, 131, 167, 182, 206, 227, 263
DdeI CTNAG 4 cut(s) 46, 81, 154, 183
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 165
EagI CGGCCG 1 cut(s) 165
EclXI CGGCCG 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 114, 210
Eco31I GGTCTC 1 cut(s) 280
Eco47III AGCGCT 1 cut(s) 193
Eco52I CGGCCG 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 20
EcoT14I CCWWGG 2 cut(s) 114, 210
ErhI CCWWGG 2 cut(s) 114, 210
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 2 cut(s) 118, 214
FaiI YATR 2 cut(s) 116, 212
FalI AAGNNNNNCTT 1 cut(s) 287
FatI CATG 2 cut(s) 114, 210
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 6 cut(s) 66, 129, 140, 165, 168, 225
FokI GGATG 2 cut(s) 55, 227
Fsp4HI GCNGC 6 cut(s) 66, 129, 140, 165, 168, 225
GlaI GCGC 2 cut(s) 111, 193
GluI GCNGC 6 cut(s) 66, 129, 140, 165, 168, 225
GsuI CTGGAG 1 cut(s) 240
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 3 cut(s) 5, 56, 167
HapII CCGG 6 cut(s) 95, 123, 143, 197, 203, 239
HgaI GACGC 1 cut(s) 128
HhaI GCGC 2 cut(s) 112, 194
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 2 cut(s) 118, 214
Hin6I GCGC 2 cut(s) 110, 192
HinP1I GCGC 2 cut(s) 110, 192
HpaII CCGG 6 cut(s) 95, 123, 143, 197, 203, 239
Hpy188III TCNNGA 4 cut(s) 40, 83, 185, 304
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 128, 145, 224, 269
HpyF3I CTNAG 4 cut(s) 46, 81, 154, 183
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 2 cut(s) 118, 214
HspAI GCGC 2 cut(s) 110, 192
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 5 cut(s) 125, 199, 211, 221, 260
Lsp1109I GCAGC 2 cut(s) 52, 126
LweI GCATC 2 cut(s) 77, 205
MalI GATC 1 cut(s) 44
MbiI CCGCTC 2 cut(s) 128, 224
MboI GATC 1 cut(s) 42
MboII GAAGA 2 cut(s) 22, 274
MflI RGATCY 1 cut(s) 42
MluCI AATT 1 cut(s) 307
MnlI CCTC 3 cut(s) 79, 170, 274
MspI CCGG 6 cut(s) 95, 123, 143, 197, 203, 239
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MvnI CGCG 2 cut(s) 110, 164
MwoI GCNNNNNNNGC 5 cut(s) 62, 128, 145, 224, 269
NcoI CCATGG 2 cut(s) 114, 210
NdeII GATC 1 cut(s) 42
NlaIII CATG 2 cut(s) 118, 214
NlaIV GGNNCC 4 cut(s) 99, 201, 207, 262
NmeAIII GCCGAG 1 cut(s) 158
NotI GCGGCCGC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PkrI GCNGC 6 cut(s) 67, 130, 141, 166, 169, 226
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 4 cut(s) 99, 201, 207, 262
PspPI GGNCC 2 cut(s) 4, 55
PsuI RGATCY 1 cut(s) 42
SatI GCNGC 6 cut(s) 66, 129, 140, 165, 168, 225
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 2 cut(s) 4, 55
ScrFI CCNGG 1 cut(s) 22
SfaNI GCATC 2 cut(s) 77, 205
Sse9I AATT 1 cut(s) 307
SsiI CCGC 6 cut(s) 108, 128, 164, 168, 224, 272
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 2 cut(s) 114, 210
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 307
TauI GCSGC 4 cut(s) 131, 167, 170, 227
TseI GCWGC 2 cut(s) 65, 139
TspGWI ACGGA 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.