Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

51645227 .. 51650278

Gene Structure 5052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G031500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAATGGCATGGAGGCTTTTTGCATTGGTACGATCGTCCACCACTTTTTGCACATCTTCTACGACCTCACCCGCCGCCGCTTCGCGCTGGAGGTCATCAGGAAGAATGGCTGCCTCGTGGTTGTCCACGTCCCCAGAAACCTTCCGGTCAAGCTCAATTCGCAAGATCTGCTTCAGCTTGGGGATAAAGGGTTTTACTTTTTGTTGCCGATAAGGACGCTTCCCTCACTCGGAGCCCTCCCTCACTTCCGCGCCATCCGCAGCTGCCCCTCCACCACTCCTCAGCTCATCTCACCTACCACTGACCTCTCTCTCTCTCTCTCTTCACCGGTTCTCGAGCATCAGGTTTCCTCTATTGGCATCGAACGTCAGCTTAGTGCTCACAGAAAAGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

132

Amino Acids

14.84

Weight (kDa)

9.81

Isoelectric Point (pI)

61.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	86, 252
AciI	CCGC	5 cut(s)	73, 76, 79, 250, 259
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgeI	ACCGGT	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	395
AjiI	CACGTC	1 cut(s)	130
AluBI	AGCT	5 cut(s)	154, 178, 264, 286, 373
AluI	AGCT	5 cut(s)	154, 178, 264, 286, 373
Alw21I	GWGCWC	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	111, 261, 264
AsiGI	ACCGGT	1 cut(s)	328
AspLEI	GCGC	2 cut(s)	88, 254
AsuHPI	GGTGA	3 cut(s)	61, 285, 318
AvaI	CYCGRG	1 cut(s)	335
BaeI	ACNNNNGTAYC	2 cut(s)	21, 54
BanII	GRGCYC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	382
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	98, 251, 273
BccI	CCATC	1 cut(s)	263
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	5 cut(s)	76, 79, 112, 262, 265
BlsI	GCNGC	5 cut(s)	77, 80, 113, 263, 266
BmeT110I	CYCGRG	1 cut(s)	335
BmgBI	CACGTC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	235
BmsI	GCATC	2 cut(s)	349, 369
BpmI	CTGGAG	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	282
BsaWI	WCCGGW	2 cut(s)	145, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	328
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	3 cut(s)	98, 251, 273
Bsh1236I	CGCG	2 cut(s)	86, 252
Bsh1285I	CGRYCG	1 cut(s)	36
BshTI	ACCGGT	1 cut(s)	328
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	146, 329
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	238, 382
Bsp143I	GATC	2 cut(s)	33, 166
BspACI	CCGC	5 cut(s)	73, 76, 79, 250, 259
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	2 cut(s)	86, 252
BspLI	GGNNCC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	328
BssMI	GATC	2 cut(s)	33, 166
BssSI	CACGAG	1 cut(s)	116
Bst2BI	CACGAG	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	282, 374
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	2 cut(s)	86, 252
BstHHI	GCGC	2 cut(s)	88, 254
BstKTI	GATC	2 cut(s)	36, 169
BstMBI	GATC	2 cut(s)	33, 166
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 169, 258
BstUI	CGCG	2 cut(s)	86, 252
BstV1I	GCAGC	3 cut(s)	98, 251, 273
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	300
CfoI	GCGC	2 cut(s)	88, 254
Cfr10I	RCCGGY	1 cut(s)	328
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	30
CspAI	ACCGGT	1 cut(s)	328
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	8 cut(s)	17, 111, 154, 178, 236, 264, 286, 373
CviKI_1	RGCY	8 cut(s)	17, 111, 154, 178, 236, 264, 286, 373
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	2 cut(s)	282, 374
DpnI	GATC	2 cut(s)	35, 168
DpnII	GATC	2 cut(s)	33, 166
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	238
FaeI	CATG	1 cut(s)	13
FaiI	YATR	1 cut(s)	11
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	80
Fnu4HI	GCNGC	5 cut(s)	76, 79, 112, 262, 265
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	5 cut(s)	76, 79, 112, 262, 265
GlaI	GCGC	2 cut(s)	87, 253
GluI	GCNGC	5 cut(s)	76, 79, 112, 262, 265
GsuI	CTGGAG	1 cut(s)	110
HapII	CCGG	2 cut(s)	146, 329
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	2 cut(s)	88, 254
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	2 cut(s)	86, 252
HinP1I	GCGC	2 cut(s)	86, 252
HpaII	CCGG	2 cut(s)	146, 329
HphI	GGTGA	3 cut(s)	61, 285, 318
Hpy166II	GTNNAC	2 cut(s)	40, 127
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	2 cut(s)	100, 335
Hpy8I	GTNNAC	2 cut(s)	40, 127
HpyAV	CCTTC	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	129, 367
HpyCH4V	TGCA	2 cut(s)	24, 52
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 169, 258
HpyF3I	CTNAG	2 cut(s)	282, 374
HpySE526I	ACGT	2 cut(s)	129, 367
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	2 cut(s)	86, 252
Kzo9I	GATC	2 cut(s)	33, 166
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	6 cut(s)	74, 85, 148, 159, 329, 342
Lsp1109I	GCAGC	3 cut(s)	98, 251, 273
LweI	GCATC	2 cut(s)	349, 369
MaeII	ACGT	2 cut(s)	129, 367
MalI	GATC	2 cut(s)	35, 168
MboI	GATC	2 cut(s)	33, 166
MboII	GAAGA	3 cut(s)	49, 115, 315
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	238, 382
MluCI	AATT	1 cut(s)	157
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	2 cut(s)	146, 329
MvnI	CGCG	2 cut(s)	86, 252
MwoI	GCNNNNNNNGC	3 cut(s)	160, 169, 258
NdeII	GATC	2 cut(s)	33, 166
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	335
PinAI	ACCGGT	1 cut(s)	328
PkrI	GCNGC	5 cut(s)	77, 80, 113, 263, 266
Ple19I	CGATCG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	166
PvuI	CGATCG	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	264
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
SatI	GCNGC	5 cut(s)	76, 79, 112, 262, 265
Sau3AI	GATC	2 cut(s)	33, 166
SduI	GDGCHC	2 cut(s)	238, 382
SfaNI	GCATC	2 cut(s)	349, 369
Sfr274I	CTCGAG	1 cut(s)	335
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	5 cut(s)	73, 76, 79, 250, 259
TaiI	ACGT	2 cut(s)	132, 370
TaqI	TCGA	2 cut(s)	336, 363
TasI	AATT	1 cut(s)	157
TauI	GCSGC	2 cut(s)	78, 81
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	3 cut(s)	111, 261, 264
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.