Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

13233683 .. 13234309

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG078700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAACATCTCCCACCACCATGCGCACATCTTCTACGACCTCACCCGCCGTTGCTTCGCACTGGAGGTCATCAAGAAGAATGGCTGCCTCGTGGAGGGGATTGTCCACCTCCCCAGAAACCTTCTGGTCAAGTTCGATTCACAGGATCTGCTTCAGACCTCCCCAGAAACCTTCTGGTCAACAATTGGAATTGGGATAAGTTTGTTTTTTGAATCATATGATGGAGGAGGAGTTGCGAGAGTGGCCGCCGATGGAGGAGTGGGAATGGGGAAGGGAGCCGATGGGGCTGAGGACGAGGGTGGACTAAAAAGATCTAGTGGTCTTCTCTCTGTTGTGGGAGTCTCCGAATGGGCTTTCTTGAACTTGCGGCAGCTATCTTACTCGGAGATTTGGATTGCTTGGAAGAGACTTGCAGCGGCGGCGAAGGAGGACGAACAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

147

Amino Acids

16.07

Weight (kDa)

5.69

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
AciI	CCGC	5 cut(s)	46, 246, 367, 416, 419
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	2 cut(s)	212, 361
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Alw26I	GTCTC	2 cut(s)	346, 400
AlwI	GGATC	1 cut(s)	153
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	3 cut(s)	84, 370, 413
AspLEI	GCGC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	34
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	314
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	71, 382, 425
BccI	CCATC	3 cut(s)	215, 245, 275
BceAI	ACGGC	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	346, 400
BfaI	CTAG	1 cut(s)	315
BglI	GCCNNNNNGGC	1 cut(s)	284
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	7 cut(s)	85, 246, 368, 371, 414, 417, 420
BlsI	GCNGC	7 cut(s)	86, 247, 369, 372, 415, 418, 421
BmiI	GGNNCC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	3 cut(s)	240, 243, 270
BseXI	GCAGC	3 cut(s)	71, 382, 425
BshFI	GGCC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	2 cut(s)	346, 400
BsnI	GGCC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	145, 311
BspACI	CCGC	5 cut(s)	46, 246, 367, 416, 419
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	66
BssMI	GATC	2 cut(s)	145, 311
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	2 cut(s)	148, 314
BstMAI	GTCTC	2 cut(s)	346, 400
BstMBI	GATC	2 cut(s)	145, 311
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 284, 419
BstV1I	GCAGC	3 cut(s)	71, 382, 425
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	145, 311
BstYI	RGATCY	2 cut(s)	145, 311
BsuRI	GGCC	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	59
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	25
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	6 cut(s)	84, 245, 278, 287, 353, 373
CviKI_1	RGCY	6 cut(s)	84, 245, 278, 287, 353, 373
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	147, 313
DpnII	GATC	2 cut(s)	145, 311
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	92
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	21, 217, 219
FatI	CATG	1 cut(s)	19
FauI	CCCGC	1 cut(s)	53
FauNDI	CATATG	1 cut(s)	217
Fnu4HI	GCNGC	7 cut(s)	85, 246, 368, 371, 414, 417, 420
Fsp4HI	GCNGC	7 cut(s)	85, 246, 368, 371, 414, 417, 420
FspAI	RTGCGCAY	1 cut(s)	24
FspBI	CTAG	1 cut(s)	315
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	7 cut(s)	85, 246, 368, 371, 414, 417, 420
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	245
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	137, 212, 339
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	3 cut(s)	106, 180, 302
Hpy188I	TCNGA	3 cut(s)	156, 346, 385
Hpy188III	TCNNGA	2 cut(s)	73, 358
Hpy8I	GTNNAC	3 cut(s)	106, 180, 302
HpyAV	CCTTC	4 cut(s)	131, 181, 265, 418
HpyCH4V	TGCA	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 284, 419
HpyF3I	CTNAG	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	145, 311
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	6 cut(s)	47, 110, 127, 128, 160, 177
Lsp1109I	GCAGC	3 cut(s)	71, 382, 425
MaeI	CTAG	1 cut(s)	315
MalI	GATC	2 cut(s)	147, 313
MboI	GATC	2 cut(s)	145, 311
MboII	GAAGA	4 cut(s)	22, 88, 314, 415
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	2 cut(s)	145, 311
MluCI	AATT	2 cut(s)	183, 189
MlyI	GAGTC	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	416
MunI	CAATTG	1 cut(s)	183
MwoI	GCNNNNNNNGC	3 cut(s)	242, 284, 419
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	2 cut(s)	145, 311
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	277
NsbI	TGCGCA	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	137, 212
PkrI	GCNGC	7 cut(s)	86, 247, 369, 372, 415, 418, 421
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	145, 311
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	7 cut(s)	85, 246, 368, 371, 414, 417, 420
Sau3AI	GATC	2 cut(s)	145, 311
SchI	GAGTC	1 cut(s)	348
SetI	ASST	7 cut(s)	42, 69, 111, 123, 161, 173, 375
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	2 cut(s)	183, 189
SsiI	CCGC	5 cut(s)	46, 246, 367, 416, 419
SspMI	CTAG	1 cut(s)	315
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	183, 189
TauI	GCSGC	4 cut(s)	248, 370, 419, 422
TfiI	GAWTC	2 cut(s)	137, 212
TscAI	CASTG	1 cut(s)	66
TseI	GCWGC	3 cut(s)	84, 370, 413
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	66
XagI	CCTNNNNNAGG	1 cut(s)	92
XcmI	CCANNNNNNNNNTGG	2 cut(s)	121, 171
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.