Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

29519452 .. 29519891

Gene Structure 440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG294200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGTGGAATTGGTCTCTGAGGTTTGGTTGAGTTGGGCAGAGTGGTGTGACGAGTCAAACTCACAAGGAACTGGAGAGGGAGTTGTCGGAGAGTCAAGAGGAGTCATGGGAGTGGCGGCCGACAAGGGATTGGGAGTGGTGAGGGGAGTCAACGGGGCAAAGGATGGGGTTGGACTGAAAAGACATGGTGGTCTTCTCGCCGTTGTGGGAGTCGCGGAAGGGGCTTTGGATGTAGTAGATTGGGCGACAGGGGAATTGAGTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.01

Weight (kDa)

4.38

Isoelectric Point (pI)

5.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	189
AccII	CGCG	1 cut(s)	215
AciI	CCGC	2 cut(s)	116, 215
AcoI	YGGCCR	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	185
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse1I	ACTGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	169, 235
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	114
BseX3I	CGGCCG	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	1 cut(s)	19
BspACI	CCGC	2 cut(s)	116, 215
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	10
BspFNI	CGCG	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	169, 235
BstFNI	CGCG	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	19
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstUI	CGCG	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	185
BstZI	CGGCCG	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	169, 235
CviAII	CATG	2 cut(s)	106, 185
CviJI	RGCY	2 cut(s)	119, 224
CviKI_1	RGCY	2 cut(s)	119, 224
DdeI	CTNAG	1 cut(s)	18
DrdI	GACNNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	117
EagI	CGGCCG	1 cut(s)	117
EclXI	CGGCCG	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	19
Eco52I	CGGCCG	1 cut(s)	117
FaeI	CATG	2 cut(s)	109, 188
FaiI	YATR	2 cut(s)	107, 186
FatI	CATG	2 cut(s)	105, 184
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	176, 242
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	109, 188
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	5 cut(s)	53, 92, 102, 147, 210
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	19, 89
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	109, 188
LpnPI	CCDG	2 cut(s)	57, 234
MaeIII	GTNAC	1 cut(s)	47
MboII	GAAGA	1 cut(s)	185
MluCI	AATT	2 cut(s)	8, 254
MlyI	GAGTC	5 cut(s)	62, 101, 111, 156, 219
MmeI	TCCRAC	2 cut(s)	67, 151
MnlI	CCTC	4 cut(s)	13, 70, 92, 135
MslI	CAYNNNNRTG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	109, 188
NmuCI	GTSAC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	5 cut(s)	61, 100, 110, 155, 218
PpsI	GAGTC	5 cut(s)	61, 100, 110, 155, 218
RseI	CAYNNNNRTG	1 cut(s)	110
SatI	GCNGC	1 cut(s)	117
SchI	GAGTC	5 cut(s)	62, 101, 111, 156, 219
SetI	ASST	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	8, 254
SsiI	CCGC	2 cut(s)	116, 215
TasI	AATT	2 cut(s)	8, 254
TauI	GCSGC	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.