pycom14g05360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0001537
Physical Location & Seq
Forward (+)
5136739 .. 5136945
207 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g05360.1

Sequence Viewer

Length: 207 bp
ATGGCGCAAGTTAGCATCTTCAGGGCCTTCTTCTTCGTGCAGATGCTGGTGTTGGTCGTCTTGGCTGCCACGGTCTTCGCTCAGGAAACTGCGCCAGCACCCGCGCCCATGGATGGAGCGGCTTACTCTTTGCCAGTAAACGGCGCCGTTGTTGGAGCGTCACTTATGGTCTCATTATTTGCCTTGTTGAAGCACTACGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.17

Weight (kDa)

6.5

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccBSI CCGCTC 1 cut(s) 119
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 102, 119
AcuI CTGAAG 1 cut(s) 4
AcyI GRCGYC 1 cut(s) 144
AdeI CACNNNGTG 1 cut(s) 199
AfiI CCNNNNNNNGG 2 cut(s) 113, 140
AgsI TTSAA 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 46
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 65
AspLEI GCGC 4 cut(s) 7, 94, 106, 146
AspS9I GGNCC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 67
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 107
BceAI ACGGC 2 cut(s) 131, 157
BcoDI GTCTC 1 cut(s) 175
BfoI RGCGCY 1 cut(s) 147
BisI GCNGC 2 cut(s) 66, 120
BlsI GCNGC 2 cut(s) 67, 121
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 145
BmsI GCATC 2 cut(s) 24, 33
BpiI GAAGAC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 69, 108
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 140
Bse1I ACTGG 1 cut(s) 134
BseDI CCNNGG 2 cut(s) 69, 108
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 113, 140
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 113, 140
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 175
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 102, 119
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 94
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 69, 108
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 81
BstDSI CCRYGG 2 cut(s) 69, 108
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 4 cut(s) 7, 94, 106, 146
BstMAI GTCTC 1 cut(s) 175
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 67
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 2 cut(s) 69, 108
BtsCI GGATG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 96
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 4 cut(s) 7, 94, 106, 146
Cfr13I GGNCC 1 cut(s) 24
CseI GACGC 1 cut(s) 147
CviAII CATG 1 cut(s) 109
CviJI RGCY 3 cut(s) 26, 65, 122
CviKI_1 RGCY 3 cut(s) 26, 65, 122
DdeI CTNAG 1 cut(s) 81
DinI GGCGCC 1 cut(s) 145
DraIII CACNNNGTG 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 108
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 112
FaiI YATR 2 cut(s) 110, 167
FatI CATG 1 cut(s) 108
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 66, 120
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 66, 120
GlaI GCGC 4 cut(s) 6, 93, 105, 145
GluI GCNGC 2 cut(s) 66, 120
HaeII RGCGCY 1 cut(s) 147
HaeIII GGCC 1 cut(s) 26
HgaI GACGC 1 cut(s) 147
HhaI GCGC 4 cut(s) 7, 94, 106, 146
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 4 cut(s) 5, 92, 104, 144
HinP1I GCGC 4 cut(s) 5, 92, 104, 144
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 40
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 4 cut(s) 5, 92, 104, 144
KasI GGCGCC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 116, 155
LpnPI CCDG 5 cut(s) 7, 32, 68, 108, 147
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 2 cut(s) 24, 33
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 159
MbiI CCGCTC 1 cut(s) 119
MboII GAAGA 4 cut(s) 10, 22, 25, 67
MluCI AATT 1 cut(s) 202
Mly113I GGCGCC 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 133
MseI TTAA 1 cut(s) 205
MvnI CGCG 1 cut(s) 104
NarI GGCGCC 1 cut(s) 144
NcoI CCATGG 1 cut(s) 108
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 67, 121
PluTI GGCGCC 1 cut(s) 147
Ppu21I YACGTR 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 205
SatI GCNGC 2 cut(s) 66, 120
Sau96I GGNCC 1 cut(s) 24
SetI ASST 1 cut(s) 201
SfaNI GCATC 2 cut(s) 24, 33
SfoI GGCGCC 1 cut(s) 145
Sse9I AATT 1 cut(s) 202
SsiI CCGC 2 cut(s) 102, 119
SspDI GGCGCC 1 cut(s) 143
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 73
TaiI ACGT 1 cut(s) 201
TasI AATT 1 cut(s) 202
TauI GCSGC 1 cut(s) 122
Tru1I TTAA 1 cut(s) 205
Tru9I TTAA 1 cut(s) 205
TseFI GTSAC 1 cut(s) 159
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.