Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

26734349 .. 26736133

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG273900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCGCAAGTTAGCATTTCCAGGGCTTTCTTCTTCGTCCAGATCTTAGTCTTGGCCCTTTTCGCTGCATCCGTCTCTGCTCAGGAGGGTTCTCCGGCATCAGCACCCGCGCCCATGGACGCCGGAGCGGCTTACTCGCTGCCGCGTGATGAGCTAAGTTTGCATCTAGCTGCTGTTAGGAAAAGAAATGCATTTCATAATCATCCAAAAATTGGGACTTTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.01

Weight (kDa)

9.69

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccBSI	CCGCTC	1 cut(s)	128
AccII	CGCG	2 cut(s)	110, 145
AciI	CCGC	3 cut(s)	108, 128, 143
AcyI	GRCGYC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	2 cut(s)	154, 170
AluI	AGCT	2 cut(s)	154, 170
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	3 cut(s)	65, 139, 170
AspLEI	GCGC	2 cut(s)	7, 112
AspS9I	GGNCC	1 cut(s)	55
BbvI	GCAGC	3 cut(s)	52, 126, 157
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	79
BfaI	CTAG	1 cut(s)	167
BglI	GCCNNNNNGGC	1 cut(s)	128
BglII	AGATCT	1 cut(s)	42
BisI	GCNGC	5 cut(s)	66, 129, 140, 143, 171
BlsI	GCNGC	5 cut(s)	67, 130, 141, 144, 172
Bme1390I	CCNGG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	3 cut(s)	77, 107, 172
Bpu10I	CCTNAGC	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	21, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	21, 114
BseGI	GGATG	2 cut(s)	68, 202
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	52, 126, 157
Bsh1236I	CGCG	2 cut(s)	110, 145
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	95, 123
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	79
BsmBI	CGTCTC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	3 cut(s)	108, 128, 143
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	2 cut(s)	110, 145
BsrBI	CCGCTC	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	21, 114
BssMI	GATC	1 cut(s)	42
BssNI	GRCGYC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	46, 81, 155
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	68, 202
BstFNI	CGCG	2 cut(s)	110, 145
BstHHI	GCGC	2 cut(s)	7, 112
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 128, 151, 160
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	2 cut(s)	110, 145
BstV1I	GCAGC	3 cut(s)	52, 126, 157
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	2 cut(s)	68, 202
CfoI	GCGC	2 cut(s)	7, 112
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	128
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	5 cut(s)	26, 56, 131, 154, 170
CviKI_1	RGCY	5 cut(s)	26, 56, 131, 154, 170
DdeI	CTNAG	3 cut(s)	46, 81, 155
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	116, 198
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	66, 129, 140, 143, 171
FokI	GGATG	2 cut(s)	55, 189
Fsp4HI	GCNGC	5 cut(s)	66, 129, 140, 143, 171
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	2 cut(s)	6, 111
GluI	GCNGC	5 cut(s)	66, 129, 140, 143, 171
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	2 cut(s)	95, 123
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	7, 112
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	2 cut(s)	5, 110
HinP1I	GCGC	2 cut(s)	5, 110
HpaII	CCGG	2 cut(s)	95, 123
Hpy188III	TCNNGA	2 cut(s)	40, 83
HpyCH4V	TGCA	3 cut(s)	68, 163, 191
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 128, 151, 160
HpyF3I	CTNAG	3 cut(s)	46, 81, 155
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	2 cut(s)	5, 110
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	6 cut(s)	7, 34, 53, 68, 108, 136
Lsp1109I	GCAGC	3 cut(s)	52, 126, 157
LweI	GCATC	3 cut(s)	77, 107, 172
MaeI	CTAG	1 cut(s)	167
MalI	GATC	1 cut(s)	44
MbiI	CCGCTC	1 cut(s)	128
MboI	GATC	1 cut(s)	42
MboII	GAAGA	2 cut(s)	22, 25
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	1 cut(s)	210
MnlI	CCTC	1 cut(s)	79
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	1 cut(s)	226
MspI	CCGG	2 cut(s)	95, 123
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	2 cut(s)	110, 145
MwoI	GCNNNNNNNGC	4 cut(s)	62, 128, 151, 160
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	5 cut(s)	67, 130, 141, 144, 172
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	226
SatI	GCNGC	5 cut(s)	66, 129, 140, 143, 171
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	2 cut(s)	156, 172
SfaNI	GCATC	3 cut(s)	77, 107, 172
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	3 cut(s)	108, 128, 143
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	114
TasI	AATT	1 cut(s)	210
TauI	GCSGC	2 cut(s)	131, 145
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TseI	GCWGC	3 cut(s)	65, 139, 170
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	212
XspI	CTAG	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.