Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002402.1

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Forward (+)

10788 .. 14134

Gene Structure 3347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002402.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

atggtggacatcgacctctccagcctcagcgacggcatgaacatctcccaccaccatgcgcacatcttctacgacctcacccgccgctgcttcgtgctggaggtcatcaagaagaatggctgcctcgtggaggggattgtccacctccccagaaaccttctggtcaagttcgattcacaggatctgcttcagattggggataaagagttttactttgtgttaccgataaggattactctgggtggatctattaagcccaggcattacgcgatggcggtcgggggagcaattggaattgggataagtgagttttactttgtgttaccgataaggattactctgggtggatctattaagcccaagcattacgcgatggcggtcgggggaggtgcaattggaattgggataagtttgttttttgaatcatatgatggaggaggagttgcgagagtggccgccgatggaggagtgggaatggggaagggagccgatggggctgaggacgagggtggactaaaaagatctagtggtcttctctctgttatgggagtctccgaatgggctttcttgaacttgcggctcgtggctcggagacttgaacttgcggcagctatcttactcggagatttggattgctcggaagagacttgcagcggcggcggaggaggacgaagagacttgaaggctgggttcgaatgttcgactaagggattgaatttgctaaaaagatctagtggtcttctctctgttatgggagtctccgaatgggctttcttgaacttgcggctcgtggctcggagacttgaacttgcggcggctatcttactcggagatttggattgctcggaagagacttgcagcggcggcggaggaggacgaagagacttgaaggctgggttcgaatgttcgactaagggattgaatttgaaatctagagggggattgaatcatttgtatgggattgaaggctggttcgaactatccaagaatcaaatccagaaagtggtaatttgttcattcgaatcatgtcctacggccgtaatttgtaatgcttttgctattttgcatcttgctgctgttattctcaagtggaatcggtctctttcaagtggaatcgattttattcgtggtgttgatgatttgacagctgatgcggtcctgagcaaaaagctcattgctctaggaagggaccagctggattctggtgaagacctcgtcggtttctgggtcgaccatgtatttgatttcggcgacgtggcagcgaatgagaggtgggattctgacggaggaggagaggaaatcggcatgggtttgggcgtgctcggcgtggccttgaggaaagtagaagactttggagttcatcggaggcatttggaccatgccgccggcgtaggcgtgccatacatgaggatccaagcttttctccatgtcctttatggttttgggtttttgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

485

Amino Acids

51.97

Weight (kDa)

6.07

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	1003
AccI	GTMKAC	1 cut(s)	1230
AccII	CGCG	2 cut(s)	269, 371
AclWI	GGATC	5 cut(s)	189, 253, 355, 1405, 1418
AcoI	YGGCCR	2 cut(s)	453, 1035
AcsI	RAATTY	2 cut(s)	715, 922
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	130, 1003
AjiI	CACGTC	1 cut(s)	1255
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	5 cut(s)	611, 1148, 1171, 1195, 1418
AluI	AGCT	5 cut(s)	611, 1148, 1171, 1195, 1418
Alw21I	GWGCWC	1 cut(s)	1323
Alw26I	GTCTC	9 cut(s)	556, 586, 638, 669, 763, 793, 845, 876, 1104
AlwI	GGATC	5 cut(s)	189, 253, 355, 1405, 1418
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	3 cut(s)	453, 1035, 1329
ApeKI	GCWGC	7 cut(s)	87, 120, 608, 651, 858, 1073, 1259
ApoI	RAATTY	2 cut(s)	715, 922
ArsI	GACNNNNNNTTYG	2 cut(s)	1223, 1255
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	3 cut(s)	1156, 1189, 1375
AsuHPI	GGTGA	2 cut(s)	70, 1217
AsuII	TTCGAA	4 cut(s)	693, 900, 975, 1020
AvaII	GGWCC	3 cut(s)	1156, 1189, 1375
BamHI	GGATCC	1 cut(s)	1410
BauI	CACGAG	3 cut(s)	125, 581, 788
BbsI	GAAGAC	4 cut(s)	524, 731, 1215, 1353
Bbv12I	GWGCWC	1 cut(s)	1323
BbvCI	CCTCAGC	2 cut(s)	26, 498
BbvI	GCAGC	7 cut(s)	74, 107, 620, 663, 870, 1060, 1271
BccI	CCATC	5 cut(s)	265, 367, 425, 455, 485
BceAI	ACGGC	3 cut(s)	49, 1022, 1050
BciT130I	CCWGG	1 cut(s)	259
BcoDI	GTCTC	9 cut(s)	556, 586, 638, 669, 763, 793, 845, 876, 1104
BfaI	CTAG	4 cut(s)	525, 732, 933, 1181
BglI	GCCNNNNNGGC	1 cut(s)	494
BglII	AGATCT	2 cut(s)	521, 728
Bme1390I	CCNGG	1 cut(s)	259
Bme18I	GGWCC	3 cut(s)	1156, 1189, 1375
BmgBI	CACGTC	1 cut(s)	1255
BmgT120I	GGNCC	3 cut(s)	1156, 1189, 1375
BmiI	GGNNCC	3 cut(s)	487, 1190, 1412
BmrFI	CCNGG	1 cut(s)	259
BmsI	GCATC	2 cut(s)	1075, 1141
BpiI	GAAGAC	4 cut(s)	524, 731, 1215, 1353
BpmI	CTGGAG	2 cut(s)	4, 119
Bpu10I	CCTNAGC	3 cut(s)	26, 498, 1160
Bpu14I	TTCGAA	4 cut(s)	693, 900, 975, 1020
BpuEI	CTTGAG	2 cut(s)	1070, 1354
Bsa29I	ATCGAT	1 cut(s)	1116
BsaI	GGTCTC	1 cut(s)	1104
BsaJI	CCNNGG	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 1003
Bse118I	RCCGGY	1 cut(s)	1385
Bse3DI	GCAATG	1 cut(s)	1173
BseBI	CCWGG	1 cut(s)	259
BseCI	ATCGAT	1 cut(s)	1116
BseDI	CCNNGG	1 cut(s)	257
BseLI	CCNNNNNNNGG	2 cut(s)	130, 1003
BseMI	GCAATG	1 cut(s)	1173
BseMII	CTCAG	3 cut(s)	40, 489, 1151
BseRI	GAGGAG	7 cut(s)	450, 453, 480, 678, 885, 1302, 1305
BseX3I	CGGCCG	1 cut(s)	1035
BseXI	GCAGC	7 cut(s)	74, 107, 620, 663, 870, 1060, 1271
BseYI	CCCAGC	2 cut(s)	686, 893
Bsh1236I	CGCG	2 cut(s)	269, 371
Bsh1285I	CGRYCG	3 cut(s)	279, 381, 1038
BshFI	GGCC	3 cut(s)	455, 1037, 1331
BshVI	ATCGAT	1 cut(s)	1116
BsiEI	CGRYCG	3 cut(s)	279, 381, 1038
BsiHKAI	GWGCWC	1 cut(s)	1323
BsiSI	CCGG	1 cut(s)	1386
BslFI	GGGAC	1 cut(s)	1202
BslI	CCNNNNNNNGG	2 cut(s)	130, 1003
BsmAI	GTCTC	9 cut(s)	556, 586, 638, 669, 763, 793, 845, 876, 1104
BsmFI	GGGAC	1 cut(s)	1202
BsnI	GGCC	3 cut(s)	455, 1037, 1331
Bso31I	GGTCTC	1 cut(s)	1104
Bsp119I	TTCGAA	4 cut(s)	693, 900, 975, 1020
Bsp1286I	GDGCHC	1 cut(s)	1323
Bsp143I	GATC	6 cut(s)	181, 245, 347, 521, 728, 1410
BspANI	GGCC	3 cut(s)	455, 1037, 1331
BspCNI	CTCAG	3 cut(s)	39, 490, 1152
BspDI	ATCGAT	1 cut(s)	1116
BspFNI	CGCG	2 cut(s)	269, 371
BspLI	GGNNCC	3 cut(s)	487, 1190, 1412
BspPI	GGATC	5 cut(s)	189, 253, 355, 1405, 1418
BspT104I	TTCGAA	4 cut(s)	693, 900, 975, 1020
BspTNI	GGTCTC	1 cut(s)	1104
BsrDI	GCAATG	1 cut(s)	1173
BsrFI	RCCGGY	1 cut(s)	1385
BssAI	RCCGGY	1 cut(s)	1385
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	6 cut(s)	181, 245, 347, 521, 728, 1410
BssSI	CACGAG	3 cut(s)	125, 581, 788
Bst2BI	CACGAG	3 cut(s)	125, 581, 788
Bst2UI	CCWGG	1 cut(s)	259
Bst6I	CTCTTC	4 cut(s)	636, 667, 843, 874
BstBI	TTCGAA	4 cut(s)	693, 900, 975, 1020
BstC8I	GCNNGC	3 cut(s)	1319, 1387, 1397
BstDEI	CTNAG	5 cut(s)	26, 498, 705, 912, 1160
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstFNI	CGCG	2 cut(s)	269, 371
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	6 cut(s)	184, 248, 350, 524, 731, 1413
BstMAI	GTCTC	9 cut(s)	556, 586, 638, 669, 763, 793, 845, 876, 1104
BstMBI	GATC	6 cut(s)	181, 245, 347, 521, 728, 1410
BstMCI	CGRYCG	3 cut(s)	279, 381, 1038
BstMWI	GCNNNNNNNGC	5 cut(s)	452, 494, 657, 864, 1323
BstNI	CCWGG	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	257
BstUI	CGCG	2 cut(s)	269, 371
BstV1I	GCAGC	7 cut(s)	74, 107, 620, 663, 870, 1060, 1271
BstV2I	GAAGAC	4 cut(s)	524, 731, 1215, 1353
BstX2I	RGATCY	6 cut(s)	181, 245, 347, 521, 728, 1410
BstYI	RGATCY	6 cut(s)	181, 245, 347, 521, 728, 1410
BstZI	CGGCCG	1 cut(s)	1035
Bsu15I	ATCGAT	1 cut(s)	1116
BsuRI	GGCC	3 cut(s)	455, 1037, 1331
BsuTUI	ATCGAT	1 cut(s)	1116
BtgZI	GCGATG	2 cut(s)	284, 386
BtrI	CACGTC	1 cut(s)	1255
Cac8I	GCNNGC	3 cut(s)	1319, 1387, 1397
CaiI	CAGNNNCTG	1 cut(s)	184
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	1385
Cfr13I	GGNCC	3 cut(s)	1156, 1189, 1375
ClaI	ATCGAT	1 cut(s)	1116
CviAII	CATG	8 cut(s)	37, 56, 1026, 1235, 1306, 1379, 1405, 1427
DdeI	CTNAG	5 cut(s)	26, 498, 705, 912, 1160
DpnI	GATC	6 cut(s)	183, 247, 349, 523, 730, 1412
DpnII	GATC	6 cut(s)	181, 245, 347, 521, 728, 1410
EaeI	YGGCCR	2 cut(s)	453, 1035
EagI	CGGCCG	1 cut(s)	1035
Eam1104I	CTCTTC	4 cut(s)	636, 667, 843, 874
EarI	CTCTTC	4 cut(s)	636, 667, 843, 874
EciI	GGCGGA	2 cut(s)	675, 882
EclXI	CGGCCG	1 cut(s)	1035
Eco31I	GGTCTC	1 cut(s)	1104
Eco47I	GGWCC	3 cut(s)	1156, 1189, 1375
Eco52I	CGGCCG	1 cut(s)	1035
Eco57I	CTGAAG	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	257
FaeI	CATG	8 cut(s)	40, 59, 1029, 1238, 1309, 1382, 1408, 1430
FaqI	GGGAC	1 cut(s)	1202
FatI	CATG	8 cut(s)	36, 55, 1025, 1234, 1305, 1378, 1404, 1426
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	1230
FspAI	RTGCGCAY	1 cut(s)	60
FspBI	CTAG	4 cut(s)	525, 732, 933, 1181
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	1 cut(s)	60
GsaI	CCCAGC	2 cut(s)	690, 897
GsuI	CTGGAG	2 cut(s)	4, 119
HaeIII	GGCC	3 cut(s)	455, 1037, 1331
HapII	CCGG	1 cut(s)	1386
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	8 cut(s)	40, 59, 1029, 1238, 1309, 1382, 1408, 1430
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	1231
HindII	GTYRAC	1 cut(s)	1231
HindIII	AAGCTT	1 cut(s)	1416
HpaII	CCGG	1 cut(s)	1386
HphI	GGTGA	2 cut(s)	70, 1217
Hpy166II	GTNNAC	4 cut(s)	7, 142, 512, 1231
Hpy188III	TCNNGA	6 cut(s)	109, 568, 775, 933, 997, 1159
Hpy8I	GTNNAC	4 cut(s)	7, 142, 512, 1231
Hpy99I	CGWCG	3 cut(s)	35, 1220, 1256
HpyAV	CCTTC	6 cut(s)	167, 475, 676, 883, 959, 1179
HpyCH4IV	ACGT	1 cut(s)	1254
HpyCH4V	TGCA	4 cut(s)	392, 651, 858, 1066
HpyF10VI	GCNNNNNNNGC	5 cut(s)	452, 494, 657, 864, 1323
HpyF3I	CTNAG	5 cut(s)	26, 498, 705, 912, 1160
HpySE526I	ACGT	1 cut(s)	1254
Hsp92II	CATG	8 cut(s)	40, 59, 1029, 1238, 1309, 1382, 1408, 1430
HspAI	GCGC	1 cut(s)	59
KroI	GCCGGC	1 cut(s)	1385
KroNI	GCCGGC	1 cut(s)	1387
Kzo9I	GATC	6 cut(s)	181, 245, 347, 521, 728, 1410
LmnI	GCTCC	2 cut(s)	284, 485
Lsp1109I	GCAGC	7 cut(s)	74, 107, 620, 663, 870, 1060, 1271
LweI	GCATC	2 cut(s)	1075, 1141
MaeI	CTAG	4 cut(s)	525, 732, 933, 1181
MaeII	ACGT	1 cut(s)	1254
MaeIII	GTNAC	2 cut(s)	219, 321
MalI	GATC	6 cut(s)	183, 247, 349, 523, 730, 1412
MboI	GATC	6 cut(s)	181, 245, 347, 521, 728, 1410
MfeI	CAATTG	2 cut(s)	288, 393
MflI	RGATCY	6 cut(s)	181, 245, 347, 521, 728, 1410
MhlI	GDGCHC	1 cut(s)	1323
MluCI	AATT	8 cut(s)	288, 294, 393, 399, 715, 922, 1008, 1041
MlyI	GAGTC	2 cut(s)	558, 765
MreI	CGCCGGCG	1 cut(s)	1385
MroNI	GCCGGC	1 cut(s)	1385
MseI	TTAA	2 cut(s)	252, 354
MslI	CAYNNNNRTG	2 cut(s)	54, 954
MspA1I	CMGCKG	5 cut(s)	87, 654, 861, 1148, 1195
MspI	CCGG	1 cut(s)	1386
MspR9I	CCNGG	1 cut(s)	259
MunI	CAATTG	2 cut(s)	288, 393
MvaI	CCWGG	1 cut(s)	259
MvnI	CGCG	2 cut(s)	269, 371
MwoI	GCNNNNNNNGC	5 cut(s)	452, 494, 657, 864, 1323
NaeI	GCCGGC	1 cut(s)	1387
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	6 cut(s)	181, 245, 347, 521, 728, 1410
NgoMIV	GCCGGC	1 cut(s)	1385
NlaIII	CATG	8 cut(s)	40, 59, 1029, 1238, 1309, 1382, 1408, 1430
NlaIV	GGNNCC	3 cut(s)	487, 1190, 1412
NmeAIII	GCCGAG	1 cut(s)	1302
NsbI	TGCGCA	1 cut(s)	60
NspV	TTCGAA	4 cut(s)	693, 900, 975, 1020
PdiI	GCCGGC	1 cut(s)	1387
PfeI	GAWTC	9 cut(s)	173, 422, 946, 988, 1022, 1093, 1113, 1199, 1277
PflFI	GACNNNGTC	1 cut(s)	1214
PflMI	CCANNNNNTGG	1 cut(s)	1003
PleI	GAGTC	2 cut(s)	557, 764
PpsI	GAGTC	2 cut(s)	557, 764
Psp6I	CCWGG	1 cut(s)	257
PspFI	CCCAGC	2 cut(s)	686, 893
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	3 cut(s)	487, 1190, 1412
PspPI	GGNCC	3 cut(s)	1156, 1189, 1375
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	6 cut(s)	181, 245, 347, 521, 728, 1410
PsyI	GACNNNGTC	1 cut(s)	1214
PvuII	CAGCTG	2 cut(s)	1148, 1195
RseI	CAYNNNNRTG	2 cut(s)	54, 954
SalI	GTCGAC	1 cut(s)	1229
SaqAI	TTAA	2 cut(s)	252, 354
Sau3AI	GATC	6 cut(s)	181, 245, 347, 521, 728, 1410
Sau96I	GGNCC	3 cut(s)	1156, 1189, 1375
SchI	GAGTC	2 cut(s)	558, 765
ScrFI	CCNGG	1 cut(s)	259
SduI	GDGCHC	1 cut(s)	1323
SfaNI	GCATC	2 cut(s)	1075, 1141
SfuI	TTCGAA	4 cut(s)	693, 900, 975, 1020
SgrAI	CRCCGGYG	1 cut(s)	1385
SinI	GGWCC	3 cut(s)	1156, 1189, 1375
SmiMI	CAYNNNNRTG	2 cut(s)	54, 954
SmlI	CTYRAG	2 cut(s)	1085, 1333
SmoI	CTYRAG	2 cut(s)	1085, 1333
Sse9I	AATT	8 cut(s)	288, 294, 393, 399, 715, 922, 1008, 1041
SspMI	CTAG	4 cut(s)	525, 732, 933, 1181
StyD4I	CCNGG	1 cut(s)	257
TaiI	ACGT	1 cut(s)	1257
TaqII	GACCGA	1 cut(s)	1086
TasI	AATT	8 cut(s)	288, 294, 393, 399, 715, 922, 1008, 1041
TfiI	GAWTC	9 cut(s)	173, 422, 946, 988, 1022, 1093, 1113, 1199, 1277
Tru1I	TTAA	2 cut(s)	252, 354
Tru9I	TTAA	2 cut(s)	252, 354
TseI	GCWGC	7 cut(s)	87, 120, 608, 651, 858, 1073, 1259
TspDTI	ATGAA	3 cut(s)	53, 1005, 1349
TspGWI	ACGGA	1 cut(s)	1299
Tth111I	GACNNNGTC	1 cut(s)	1214
Van91I	CCANNNNNTGG	1 cut(s)	1003
VpaK11BI	GGWCC	3 cut(s)	1156, 1189, 1375
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	2 cut(s)	715, 922
XbaI	TCTAGA	1 cut(s)	932
XcmI	CCANNNNNNNNNTGG	3 cut(s)	157, 1199, 1433
XmiI	GTMKAC	1 cut(s)	1230
XspI	CTAG	4 cut(s)	525, 732, 933, 1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.