Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

45173207 .. 45176909

Gene Structure 3703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG275600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACGACGAGCAGTGACGTGGAGGCCGGATTCGCGAAGCTCCAAGGCGAAGACTTTGAGTACTACATGCAGACCTACTCCATAATCCTGGGCCGCAACTCCAAGAAATCGACGGTGGACGTCGACCTGTCCAGCCTCGGCGGCGGAATGAACATCTCCCGCCACCACGCGCGCATCTTCTACGACTTTACGCGCCGCCGCTTCGCTCTTGAGGTTCTCGGGAAGAACGGGTGTCTCGTCGAGGGGGTTCTCCACCTCCCCGGAAACCCTCCGGTCAAGCTCGATTCGCAGGATCTGCTTCAGATTGGGGATAAAGAGTTTTACTTTTTGTTGCCGGTGAGGAGTATTCTGGGTGGGCCTATTGGGCCCAGGCATTACGCGGCGGCGGTCGGGGTTTCCGGCTCGGCGGGGACGGCCCATTATGGATATGGGCATCCTGGCGCGTCGGCAGGGTCGGTGGCGAAGAAGAGTAGGGGGAGGGAGTTTTATGAGGACGAATATGAGGATGAGGATGATATTGGCGGCGGGGGCGGCGGCGGTAGTGGTAGTGGGAAGAAGAGGAGGGAAGGGTATGAGGGTTATGGGTACAGTGGTGGTGGGCCGGGTTCTGGATCGGGCACCAAGTCGGGTTCTTTGGCTTTAGAAAAGAAGGGAGATGGAAGATCAAGGGTTGATCGAGACAGTGACAATCAGCAACTTCTGCATTTGGAAGAAAAGGATGTGGTGTCATCTGTTGCTACGGTGCTCTCTGATCTTTGTGGTCCTGGCGAATGGATGCCTATGGAGAAACTGCATGCTGAGGTTAGCCTTGAGTCCTTGACATATTCTCGTGAACAAAATATATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

282

Amino Acids

30.17

Weight (kDa)

5.54

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FHA	PF00498	29 - 103	2e-10	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	6 cut(s)	35, 170, 172, 193, 380, 443
AclWI	GGATC	2 cut(s)	300, 619
AcuI	CTGAAG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	62, 587
AfiI	CCNNNNNNNGG	1 cut(s)	608
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	4 cut(s)	87, 368, 436, 763
AluBI	AGCT	2 cut(s)	40, 280
AluI	AGCT	2 cut(s)	40, 280
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	2 cut(s)	239, 672
AlwI	GGATC	2 cut(s)	300, 619
AlwNI	CAGNNNCTG	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	6 cut(s)	24, 91, 356, 365, 414, 599
ApaI	GGGCCC	1 cut(s)	369
AspLEI	GCGC	4 cut(s)	172, 174, 195, 443
AspS9I	GGNCC	7 cut(s)	91, 356, 365, 366, 415, 599, 761
AsuC2I	CCSGG	2 cut(s)	261, 603
AsuHPI	GGTGA	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	761
BaeGI	GKGCMC	2 cut(s)	369, 620
BaeI	ACNNNNGTAYC	2 cut(s)	577, 610
BanI	GGYRCC	1 cut(s)	617
BanII	GRGCYC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	828
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	747
BbvCI	CCTCAGC	1 cut(s)	798
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	1 cut(s)	429
BciT130I	CCWGG	4 cut(s)	89, 370, 438, 765
BcnI	CCSGG	2 cut(s)	261, 603
BcoDI	GTCTC	2 cut(s)	239, 672
BglI	GCCNNNNNGGC	2 cut(s)	141, 364
BisI	GCNGC	9 cut(s)	94, 142, 196, 199, 381, 384, 523, 532, 535
BlsI	GCNGC	9 cut(s)	95, 143, 197, 200, 382, 385, 524, 533, 536
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	6 cut(s)	89, 261, 370, 438, 603, 765
Bme18I	GGWCC	1 cut(s)	761
BmeT110I	CYCGRG	1 cut(s)	218
BmgBI	CACGTC	1 cut(s)	19
BmgT120I	GGNCC	7 cut(s)	91, 356, 365, 366, 415, 599, 761
BmiI	GGNNCC	2 cut(s)	367, 619
BmrFI	CCNGG	6 cut(s)	89, 261, 370, 438, 603, 765
BmsI	GCATC	3 cut(s)	183, 442, 765
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	2 cut(s)	230, 830
BpuMI	CCSGG	2 cut(s)	261, 603
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	5 cut(s)	43, 88, 136, 259, 368
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse118I	RCCGGY	1 cut(s)	334
BseBI	CCWGG	4 cut(s)	89, 370, 438, 765
BseDI	CCNNGG	5 cut(s)	43, 88, 136, 259, 368
BseGI	GGATG	5 cut(s)	433, 511, 517, 724, 780
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMII	CTCAG	1 cut(s)	789
BsePI	GCGCGC	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	355, 574
BseSI	GKGCMC	2 cut(s)	369, 620
Bsh1236I	CGCG	6 cut(s)	35, 170, 172, 193, 380, 443
Bsh1285I	CGRYCG	1 cut(s)	390
BshFI	GGCC	6 cut(s)	26, 93, 358, 367, 416, 601
BshNI	GGYRCC	1 cut(s)	617
BsiEI	CGRYCG	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	747
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	6 cut(s)	27, 261, 272, 335, 399, 602
BslFI	GGGAC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmAI	GTCTC	2 cut(s)	239, 672
BsmFI	GGGAC	1 cut(s)	424
BsnI	GGCC	6 cut(s)	26, 93, 358, 367, 416, 601
BsoBI	CYCGRG	1 cut(s)	218
Bsp120I	GGGCCC	1 cut(s)	365
Bsp1286I	GDGCHC	3 cut(s)	369, 620, 747
Bsp143I	GATC	5 cut(s)	292, 611, 662, 673, 751
Bsp68I	TCGCGA	1 cut(s)	35
BspANI	GGCC	6 cut(s)	26, 93, 358, 367, 416, 601
BspCNI	CTCAG	1 cut(s)	790
BspFNI	CGCG	6 cut(s)	35, 170, 172, 193, 380, 443
BspLI	GGNNCC	2 cut(s)	367, 619
BspPI	GGATC	2 cut(s)	300, 619
BspT107I	GGYRCC	1 cut(s)	617
BsrFI	RCCGGY	1 cut(s)	334
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	5 cut(s)	43, 88, 136, 259, 368
BssHII	GCGCGC	1 cut(s)	170
BssMI	GATC	5 cut(s)	292, 611, 662, 673, 751
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	828
BssT1I	CCWWGG	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	828
Bst2UI	CCWGG	4 cut(s)	89, 370, 438, 765
Bst4CI	ACNGT	4 cut(s)	115, 590, 683, 742
Bst6I	CTCTTC	2 cut(s)	461, 551
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	2 cut(s)	295, 700
BstC8I	GCNNGC	2 cut(s)	172, 795
BstDEI	CTNAG	1 cut(s)	798
BstF5I	GGATG	5 cut(s)	433, 511, 517, 724, 780
BstFNI	CGCG	6 cut(s)	35, 170, 172, 193, 380, 443
BstHHI	GCGC	4 cut(s)	172, 174, 195, 443
BstKTI	GATC	5 cut(s)	295, 614, 665, 676, 754
BstMAI	GTCTC	2 cut(s)	239, 672
BstMBI	GATC	5 cut(s)	292, 611, 662, 673, 751
BstMCI	CGRYCG	1 cut(s)	390
BstMWI	GCNNNNNNNGC	9 cut(s)	32, 141, 286, 295, 364, 413, 528, 531, 700
BstNI	CCWGG	4 cut(s)	89, 370, 438, 765
BstNSI	RCATGY	2 cut(s)	70, 797
BstSCI	CCNGG	6 cut(s)	87, 259, 368, 436, 601, 763
BstSLI	GKGCMC	2 cut(s)	369, 620
BstUI	CGCG	6 cut(s)	35, 170, 172, 193, 380, 443
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	292
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	6 cut(s)	26, 93, 358, 367, 416, 601
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	5 cut(s)	433, 511, 517, 724, 780
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	3 cut(s)	19, 595, 688
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	172, 795
CaiI	CAGNNNCTG	1 cut(s)	295
CfoI	GCGC	4 cut(s)	172, 174, 195, 443
Cfr10I	RCCGGY	1 cut(s)	334
Cfr13I	GGNCC	7 cut(s)	91, 356, 365, 366, 415, 599, 761
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	61, 586
CviAII	CATG	2 cut(s)	67, 794
CviQI	GTAC	2 cut(s)	61, 586
DdeI	CTNAG	1 cut(s)	798
DpnI	GATC	5 cut(s)	294, 613, 664, 675, 753
DpnII	GATC	5 cut(s)	292, 611, 662, 673, 751
Eam1104I	CTCTTC	2 cut(s)	461, 551
EarI	CTCTTC	2 cut(s)	461, 551
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	1 cut(s)	218
EcoRII	CCWGG	4 cut(s)	87, 368, 436, 763
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	43
FaeI	CATG	2 cut(s)	70, 797
FaqI	GGGAC	1 cut(s)	424
FatI	CATG	2 cut(s)	66, 793
FauI	CCCGC	3 cut(s)	167, 400, 518
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	9 cut(s)	94, 142, 196, 199, 381, 384, 523, 532, 535
FokI	GGATG	5 cut(s)	420, 518, 524, 731, 787
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	9 cut(s)	94, 142, 196, 199, 381, 384, 523, 532, 535
GlaI	GCGC	4 cut(s)	171, 173, 194, 442
GluI	GCNGC	9 cut(s)	94, 142, 196, 199, 381, 384, 523, 532, 535
HaeIII	GGCC	6 cut(s)	26, 93, 358, 367, 416, 601
HapII	CCGG	6 cut(s)	27, 261, 272, 335, 399, 602
HgaI	GACGC	1 cut(s)	432
HhaI	GCGC	4 cut(s)	172, 174, 195, 443
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	70, 797
Hin6I	GCGC	4 cut(s)	170, 172, 193, 441
HinP1I	GCGC	4 cut(s)	170, 172, 193, 441
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	3 cut(s)	30, 284, 812
HpaII	CCGG	6 cut(s)	27, 261, 272, 335, 399, 602
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	3 cut(s)	118, 124, 833
Hpy188I	TCNGA	2 cut(s)	303, 751
Hpy188III	TCNNGA	6 cut(s)	34, 209, 220, 609, 677, 830
Hpy8I	GTNNAC	3 cut(s)	118, 124, 833
Hpy99I	CGWCG	5 cut(s)	10, 115, 125, 242, 448
HpyAV	CCTTC	2 cut(s)	560, 643
HpyCH4III	ACNGT	4 cut(s)	115, 590, 683, 742
HpyCH4IV	ACGT	2 cut(s)	18, 120
HpyCH4V	TGCA	3 cut(s)	70, 703, 793
HpyF10VI	GCNNNNNNNGC	9 cut(s)	32, 141, 286, 295, 364, 413, 528, 531, 700
HpyF3I	CTNAG	1 cut(s)	798
HpySE526I	ACGT	2 cut(s)	18, 120
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	70, 797
HspAI	GCGC	4 cut(s)	170, 172, 193, 441
Kzo9I	GATC	5 cut(s)	292, 611, 662, 673, 751
LmnI	GCTCC	1 cut(s)	45
LweI	GCATC	3 cut(s)	183, 442, 765
MaeII	ACGT	2 cut(s)	18, 120
MaeIII	GTNAC	2 cut(s)	14, 683
MalI	GATC	5 cut(s)	294, 613, 664, 675, 753
MboI	GATC	5 cut(s)	292, 611, 662, 673, 751
MboII	GAAGA	9 cut(s)	62, 169, 235, 475, 478, 565, 568, 672, 722
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	369, 620, 747
MlyI	GAGTC	1 cut(s)	821
MseI	TTAA	1 cut(s)	847
MspI	CCGG	6 cut(s)	27, 261, 272, 335, 399, 602
MspR9I	CCNGG	6 cut(s)	89, 261, 370, 438, 603, 765
MvaI	CCWGG	4 cut(s)	89, 370, 438, 765
MvnI	CGCG	6 cut(s)	35, 170, 172, 193, 380, 443
MwoI	GCNNNNNNNGC	9 cut(s)	32, 141, 286, 295, 364, 413, 528, 531, 700
NciI	CCSGG	2 cut(s)	261, 603
NdeII	GATC	5 cut(s)	292, 611, 662, 673, 751
NlaIII	CATG	2 cut(s)	70, 797
NlaIV	GGNNCC	2 cut(s)	367, 619
NmeAIII	GCCGAG	2 cut(s)	117, 383
NmuCI	GTSAC	2 cut(s)	14, 683
NruI	TCGCGA	1 cut(s)	35
NspI	RCATGY	2 cut(s)	70, 797
PaeI	GCATGC	1 cut(s)	797
PauI	GCGCGC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	30, 284
PkrI	GCNGC	9 cut(s)	95, 143, 197, 200, 382, 385, 524, 533, 536
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
Psp6I	CCWGG	4 cut(s)	87, 368, 436, 763
PspGI	CCWGG	4 cut(s)	87, 368, 436, 763
PspN4I	GGNNCC	2 cut(s)	367, 619
PspOMI	GGGCCC	1 cut(s)	365
PspPI	GGNCC	7 cut(s)	91, 356, 365, 366, 415, 599, 761
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	292
PteI	GCGCGC	1 cut(s)	170
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	2 cut(s)	62, 587
RsaNI	GTAC	2 cut(s)	61, 586
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	847
SatI	GCNGC	9 cut(s)	94, 142, 196, 199, 381, 384, 523, 532, 535
Sau3AI	GATC	5 cut(s)	292, 611, 662, 673, 751
Sau96I	GGNCC	7 cut(s)	91, 356, 365, 366, 415, 599, 761
ScaI	AGTACT	1 cut(s)	62
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	6 cut(s)	89, 261, 370, 438, 603, 765
SduI	GDGCHC	3 cut(s)	369, 620, 747
SetI	ASST	9 cut(s)	21, 42, 77, 123, 129, 216, 258, 282, 804
SfaNI	GCATC	3 cut(s)	183, 442, 765
SfiI	GGCCNNNNNGGCC	1 cut(s)	364
SinI	GGWCC	1 cut(s)	761
SmlI	CTYRAG	2 cut(s)	209, 809
SmoI	CTYRAG	2 cut(s)	209, 809
SphI	GCATGC	1 cut(s)	797
StyD4I	CCNGG	6 cut(s)	87, 259, 368, 436, 601, 763
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	4 cut(s)	115, 590, 683, 742
TaiI	ACGT	2 cut(s)	21, 123
TaqI	TCGA	5 cut(s)	110, 123, 240, 282, 676
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	9 cut(s)	96, 144, 198, 201, 383, 386, 525, 534, 537
TfiI	GAWTC	2 cut(s)	30, 284
Tru1I	TTAA	1 cut(s)	847
Tru9I	TTAA	1 cut(s)	847
TscAI	CASTG	3 cut(s)	19, 595, 688
TseFI	GTSAC	2 cut(s)	14, 683
Tsp45I	GTSAC	2 cut(s)	14, 683
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	3 cut(s)	19, 595, 688
VpaK11BI	GGWCC	1 cut(s)	761
XceI	RCATGY	2 cut(s)	70, 797
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	123
ZraI	GACGTC	1 cut(s)	121
ZrmI	AGTACT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.