Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

60562909 .. 60564686

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG445900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGGAGGAGGAGGATCCCGTCGGTCTAGCCGGAAGCAGCAATTTCACCATCATCGTCACCGGAGTTGCTCCAATTTTCGGGCCGGTTTTAGGACTTTCGGGCCCAACCCGTCCTTTAAAAAAAACTAAAAAACTGATGTGCAGATGCAGCAGTATCGTACTCTCATCCTCTGCTGTGCTCATGGAGATCTTTGGCTTTGAAAAACCAAAGGGAGAAGAGATTTGGATTGCTGGGAAAAGAGAAGAAAGGTCGCGGCTCAGAGACTTGAACTTGCGGCGGCTATCTTACTCGGAGATTTGGATTGCTTGGAAGAGACTGGCAGCGGCGGCGGAGGAGGAGGACGAAGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.17

Weight (kDa)

5.33

Isoelectric Point (pI)

64.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	256
AciI	CCGC	6 cut(s)	256, 277, 280, 326, 329, 332
AclWI	GGATC	2 cut(s)	11, 24
AfaI	GTAC	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	80, 92
AgsI	TTSAA	2 cut(s)	203, 271
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	3 cut(s)	258, 310, 344
AlwI	GGATC	2 cut(s)	11, 24
AoxI	GGCC	2 cut(s)	83, 103
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	3 cut(s)	39, 150, 323
AspS9I	GGNCC	3 cut(s)	83, 103, 104
AsuHPI	GGTGA	2 cut(s)	40, 52
BaeGI	GKGCMC	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	51, 162, 335
BccI	CCATC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BcoDI	GTCTC	3 cut(s)	258, 310, 344
BfaI	CTAG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	189
BisI	GCNGC	8 cut(s)	40, 151, 257, 278, 281, 324, 327, 330
BlsI	GCNGC	8 cut(s)	41, 152, 258, 279, 282, 325, 328, 331
BmgT120I	GGNCC	3 cut(s)	83, 103, 104
BmiI	GGNNCC	2 cut(s)	18, 105
BmsI	GCATC	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 92
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	324
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	2 cut(s)	80, 92
BseMII	CTCAG	1 cut(s)	274
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	5 cut(s)	20, 23, 26, 350, 353
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	51, 162, 335
BseYI	CCCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	85, 105
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	3 cut(s)	33, 63, 86
BslI	CCNNNNNNNGG	2 cut(s)	80, 92
BsmAI	GTCTC	3 cut(s)	258, 310, 344
BsnI	GGCC	2 cut(s)	85, 105
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	107, 183
Bsp143I	GATC	2 cut(s)	16, 189
BspACI	CCGC	6 cut(s)	256, 277, 280, 326, 329, 332
BspANI	GGCC	2 cut(s)	85, 105
BspCNI	CTCAG	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	18, 105
BspPI	GGATC	2 cut(s)	11, 24
BsrFI	RCCGGY	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	85
BssMI	GATC	2 cut(s)	16, 189
Bst6I	CTCTTC	3 cut(s)	213, 308, 342
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	167
BstFNI	CGCG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	19, 192
BstMAI	GTCTC	3 cut(s)	258, 310, 344
BstMBI	GATC	2 cut(s)	16, 189
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 329
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	51, 162, 335
BstX2I	RGATCY	2 cut(s)	16, 189
BstYI	RGATCY	2 cut(s)	16, 189
BsuRI	GGCC	2 cut(s)	85, 105
BtsCI	GGATG	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	3 cut(s)	83, 103, 104
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	6 cut(s)	32, 85, 105, 198, 259, 283
CviKI_1	RGCY	6 cut(s)	32, 85, 105, 198, 259, 283
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	2 cut(s)	18, 191
DpnII	GATC	2 cut(s)	16, 189
DraI	TTTAAA	1 cut(s)	120
Eam1104I	CTCTTC	3 cut(s)	213, 308, 342
EarI	CTCTTC	3 cut(s)	213, 308, 342
EciI	GGCGGA	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	107
FaeI	CATG	1 cut(s)	187
FaiI	YATR	1 cut(s)	185
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	8 cut(s)	40, 151, 257, 278, 281, 324, 327, 330
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	8 cut(s)	40, 151, 257, 278, 281, 324, 327, 330
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	8 cut(s)	40, 151, 257, 278, 281, 324, 327, 330
GsaI	CCCAGC	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	85, 105
HapII	CCGG	3 cut(s)	33, 63, 86
Hin1II	CATG	1 cut(s)	187
HpaII	CCGG	3 cut(s)	33, 63, 86
HphI	GGTGA	2 cut(s)	40, 52
Hpy188I	TCNGA	2 cut(s)	263, 295
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4V	TGCA	2 cut(s)	144, 150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 329
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	16, 189
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	5 cut(s)	46, 76, 99, 219, 305
Lsp1109I	GCAGC	3 cut(s)	51, 162, 335
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	2 cut(s)	18, 191
MboI	GATC	2 cut(s)	16, 189
MboII	GAAGA	3 cut(s)	230, 257, 325
MflI	RGATCY	2 cut(s)	16, 189
MhlI	GDGCHC	2 cut(s)	107, 183
MluCI	AATT	2 cut(s)	43, 75
MnlI	CCTC	6 cut(s)	4, 7, 181, 328, 331, 334
MseI	TTAA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	3 cut(s)	33, 63, 86
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	2 cut(s)	150, 329
NdeII	GATC	2 cut(s)	16, 189
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	2 cut(s)	18, 105
NmuCI	GTSAC	1 cut(s)	58
PkrI	GCNGC	8 cut(s)	41, 152, 258, 279, 282, 325, 328, 331
PspFI	CCCAGC	1 cut(s)	233
PspN4I	GGNNCC	2 cut(s)	18, 105
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	3 cut(s)	83, 103, 104
PsuI	RGATCY	2 cut(s)	16, 189
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	8 cut(s)	40, 151, 257, 278, 281, 324, 327, 330
Sau3AI	GATC	2 cut(s)	16, 189
Sau96I	GGNCC	3 cut(s)	83, 103, 104
SduI	GDGCHC	2 cut(s)	107, 183
SetI	ASST	1 cut(s)	254
SfaNI	GCATC	1 cut(s)	137
Sse9I	AATT	2 cut(s)	43, 75
SsiI	CCGC	6 cut(s)	256, 277, 280, 326, 329, 332
SspMI	CTAG	1 cut(s)	29
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	2 cut(s)	43, 75
TauI	GCSGC	5 cut(s)	259, 280, 283, 329, 332
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	3 cut(s)	39, 150, 323
Tsp45I	GTSAC	1 cut(s)	58
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.