Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

22979020 .. 22979663

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00400780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCACAGGTTAGCATTCCCCGGGCCTTCTTCTTGATGCAGGTGCTGGTCTTAGTCCTCGCGGCCGCAACTGTCTCGGCTCAGGAGAGCGCTCCGGCACCGGCTCCCATGGATGCTGGAGCGGCTTACTCTTTGCCGATCAATGGTGCGGTTGTTGGAGCCTCGATTGCGCTCTCATTCTTCTCCTTGTTCAAGCACTACTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.12

Weight (kDa)

6.5

Isoelectric Point (pI)

25.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	31
Acc36I	ACCTGC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	97
AccBSI	CCGCTC	1 cut(s)	122
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	62, 66, 122, 149
AcoI	YGGCCR	1 cut(s)	63
AfeI	AGCGCT	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	193, 205
Alw26I	GTCTC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	21
Aor51HI	AGCGCT	1 cut(s)	91
AoxI	GGCC	2 cut(s)	24, 63
AspLEI	GCGC	2 cut(s)	92, 172
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	2 cut(s)	22, 23
AvaI	CYCGRG	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BcnI	CCSGG	2 cut(s)	22, 23
BcoDI	GTCTC	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	3 cut(s)	63, 66, 123
BlsI	GCNGC	3 cut(s)	64, 67, 124
Bme1390I	CCNGG	2 cut(s)	22, 23
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	3 cut(s)	99, 105, 160
BmrFI	CCNGG	2 cut(s)	22, 23
BmsI	GCATC	2 cut(s)	27, 103
BpmI	CTGGAG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	22, 23
BsaJI	CCNNGG	3 cut(s)	20, 21, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse118I	RCCGGY	1 cut(s)	100
BseDI	CCNNGG	3 cut(s)	20, 21, 108
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	95
BseX3I	CGGCCG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	26, 65
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	3 cut(s)	22, 95, 101
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	26, 65
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	4 cut(s)	62, 66, 122, 149
BspANI	GGCC	2 cut(s)	26, 65
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	99, 105, 160
BspMI	ACCTGC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	20, 21, 108
BssMI	GATC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	52, 81
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 172
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	138
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 167
BstSCI	CCNGG	2 cut(s)	20, 21
BstUI	CGCG	1 cut(s)	62
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	26, 65
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	31
CaiI	CAGNNNCTG	1 cut(s)	46
CciNI	GCGGCCGC	1 cut(s)	63
CfoI	GCGC	2 cut(s)	92, 172
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	24
Cfr9I	CCCGGG	1 cut(s)	21
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	6 cut(s)	26, 65, 80, 104, 125, 161
CviKI_1	RGCY	6 cut(s)	26, 65, 80, 104, 125, 161
DdeI	CTNAG	2 cut(s)	52, 81
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	108
Eco47III	AGCGCT	1 cut(s)	91
Eco52I	CGGCCG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	112
FaiI	YATR	1 cut(s)	110
FalI	AAGNNNNNCTT	1 cut(s)	185
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	63, 66, 123
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	63, 66, 123
GlaI	GCGC	2 cut(s)	91, 171
GluI	GCNGC	3 cut(s)	63, 66, 123
GsuI	CTGGAG	1 cut(s)	138
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	26, 65
HapII	CCGG	3 cut(s)	22, 95, 101
HhaI	GCGC	2 cut(s)	92, 172
Hin1II	CATG	1 cut(s)	112
Hin6I	GCGC	2 cut(s)	90, 170
HinP1I	GCGC	2 cut(s)	90, 170
HpaII	CCGG	3 cut(s)	22, 95, 101
Hpy188III	TCNNGA	2 cut(s)	34, 83
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 167
HpyF3I	CTNAG	2 cut(s)	52, 81
Hsp92II	CATG	1 cut(s)	112
HspAI	GCGC	2 cut(s)	90, 170
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	4 cut(s)	97, 109, 119, 158
LpnPI	CCDG	7 cut(s)	26, 32, 35, 68, 102, 108, 114
LweI	GCATC	2 cut(s)	27, 103
MalI	GATC	1 cut(s)	140
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	1 cut(s)	138
MboII	GAAGA	2 cut(s)	22, 172
MluCI	AATT	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	2 cut(s)	68, 172
MspI	CCGG	3 cut(s)	22, 95, 101
MspR9I	CCNGG	2 cut(s)	22, 23
Mva1269I	GAATGC	1 cut(s)	15
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	122, 167
NciI	CCSGG	2 cut(s)	22, 23
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	3 cut(s)	99, 105, 160
NmeAIII	GCCGAG	1 cut(s)	56
NotI	GCGGCCGC	1 cut(s)	63
PaqCI	CACCTGC	1 cut(s)	31
PctI	GAATGC	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	64, 67, 124
PspN4I	GGNNCC	3 cut(s)	99, 105, 160
PspPI	GGNCC	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	46
SatI	GCNGC	3 cut(s)	63, 66, 123
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	22, 23
SetI	ASST	2 cut(s)	12, 45
SfaNI	GCATC	2 cut(s)	27, 103
SmaI	CCCGGG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	4 cut(s)	62, 66, 122, 149
StyD4I	CCNGG	2 cut(s)	20, 21
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	73
TaqI	TCGA	1 cut(s)	164
TasI	AATT	1 cut(s)	205
TauI	GCSGC	3 cut(s)	65, 68, 125
TspMI	CCCGGG	1 cut(s)	21
XmaI	CCCGGG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.