Rh2BG235700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001537
Physical Location & Seq
Forward (+)
23470459 .. 23475987
5529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG235700.1

Sequence Viewer

Length: 270 bp
ATGGGGGAGGAGAAGGGTTTTGTCTGGAGAGGCGGACCGTTGAGTCGCAGGTCGCTGAAATCCTCCGGCACCGATCCGGTGAAGCCTTTGTCGGAGAGAGGAGTCGCGGGAGTGGCGGCCGACAAGGGATTGGGAGTGGTGAGGGGAGTCAACCGGGCTGAGGATGGGGGTGGACTGAAAAGACGTGGTGGTCTTCTCGCCGTTGTGGGAGTCGCAGGAGGGGCTTTGGATGTAGTAGATTGGGCGACAGGGGAATCGGGTCAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

8.97

Weight (kDa)

9.39

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 42, 189
Acc36I ACCTGC 1 cut(s) 39
AccB1I GGYRCC 1 cut(s) 68
AccII CGCG 1 cut(s) 107
AciI CCGC 3 cut(s) 33, 107, 116
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 160
AjiI CACGTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 91, 151
AvaII GGWCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 185
BbvCI CCTCAGC 1 cut(s) 159
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 185
BcnI CCSGG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 39
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 35
BmgBI CACGTC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 46
Bpu10I CCTNAGC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 169, 235
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 150
BseRI GAGGAG 2 cut(s) 23, 114
BseX3I CGGCCG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 1 cut(s) 120
BsiSI CCGG 3 cut(s) 66, 77, 154
BslI CCNNNNNNNGG 1 cut(s) 160
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 3 cut(s) 33, 107, 116
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 39
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 68
BssMI GATC 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 169, 235
BstFNI CGCG 1 cut(s) 107
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 113, 221
BstSCI CCNGG 1 cut(s) 153
BstUI CGCG 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 185
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 1 cut(s) 119
BtrI CACGTC 1 cut(s) 185
BtsCI GGATG 2 cut(s) 169, 235
BveI ACCTGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 35
CpoI CGGWCCG 1 cut(s) 35
CspI CGGWCCG 1 cut(s) 35
CviJI RGCY 4 cut(s) 85, 119, 158, 224
CviKI_1 RGCY 4 cut(s) 85, 119, 158, 224
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DrdI GACNNNNNNGTC 2 cut(s) 42, 189
DseDI GACNNNNNNGTC 2 cut(s) 42, 189
EaeI YGGCCR 1 cut(s) 117
EagI CGGCCG 1 cut(s) 117
EciI GGCGGA 1 cut(s) 48
EclXI CGGCCG 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 117
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 176, 242
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 46
HaeIII GGCC 1 cut(s) 119
HapII CCGG 3 cut(s) 66, 77, 154
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 5 cut(s) 43, 102, 147, 210, 254
HpaII CCGG 3 cut(s) 66, 77, 154
HphI GGTGA 2 cut(s) 91, 151
Hpy166II GTNNAC 2 cut(s) 151, 173
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 25, 263
Hpy8I GTNNAC 2 cut(s) 151, 173
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 221
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 184
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 8 cut(s) 10, 34, 79, 90, 167, 201, 234, 248
MaeII ACGT 1 cut(s) 184
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 185
MlyI GAGTC 4 cut(s) 52, 111, 156, 219
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 6 cut(s) 23, 73, 92, 135, 154, 212
MspI CCGG 3 cut(s) 66, 77, 154
MspR9I CCNGG 1 cut(s) 155
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 113, 221
NciI CCSGG 1 cut(s) 155
NdeII GATC 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 4 cut(s) 51, 110, 155, 218
PpsI GAGTC 4 cut(s) 51, 110, 155, 218
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 35
Rsr2I CGGWCCG 1 cut(s) 35
RsrII CGGWCCG 1 cut(s) 35
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 4 cut(s) 52, 111, 156, 219
ScrFI CCNGG 1 cut(s) 155
SetI ASST 2 cut(s) 53, 187
SinI GGWCC 1 cut(s) 35
SsiI CCGC 3 cut(s) 33, 107, 116
StyD4I CCNGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 187
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.