pycom14g05340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0001537
Physical Location & Seq
Forward (+)
5114737 .. 5114937
201 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g05340.1

Sequence Viewer

Length: 201 bp
ATGGCGAAAGTTAGCATCTCCAGGGCCTTCTTCTTCGTCGTGATAGCATTGGCTGCAGCAACAATCTCGGCTCAGGAGAGCGCCCCGGCGCCGGCGCCTATGGATGCTGGAGCGGCCTACTCTTCGCCTGTAAACGGTGCCGTATTAGGAGCATCACTTATGGTCTCAGTTTTCGCCTTGTTCAAGCACTACTTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

6.72

Weight (kDa)

8.21

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 88, 94, 137
AccBSI CCGCTC 1 cut(s) 113
AciI CCGC 1 cut(s) 113
AcyI GRCGYC 2 cut(s) 89, 95
AfiI CCNNNNNNNGG 2 cut(s) 91, 134
AgsI TTSAA 2 cut(s) 184, 196
AjnI CCWGG 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 169
AoxI GGCC 2 cut(s) 24, 114
ApeKI GCWGC 2 cut(s) 53, 56
AspLEI GCGC 3 cut(s) 83, 91, 97
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 86
BanI GGYRCC 3 cut(s) 88, 94, 137
BbvI GCAGC 2 cut(s) 40, 68
BceAI ACGGC 1 cut(s) 125
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciT130I CCWGG 1 cut(s) 22
BcnI CCSGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 169
BfmI CTRYAG 1 cut(s) 54
BfoI RGCGCY 3 cut(s) 84, 92, 98
BisI GCNGC 3 cut(s) 54, 57, 114
BlsI GCNGC 3 cut(s) 55, 58, 115
Bme1390I CCNGG 2 cut(s) 22, 86
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 3 cut(s) 90, 96, 139
BmrFI CCNGG 2 cut(s) 22, 86
BmsI GCATC 3 cut(s) 24, 94, 161
BpmI CTGGAG 2 cut(s) 4, 129
Bpu10I CCTNAGC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 86
BsaHI GRCGYC 2 cut(s) 89, 95
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 2 cut(s) 21, 84
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 134
Bse118I RCCGGY 1 cut(s) 91
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 21, 84
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 91, 134
BseMII CTCAG 2 cut(s) 86, 180
BseXI GCAGC 2 cut(s) 40, 68
BshFI GGCC 2 cut(s) 26, 116
BshNI GGYRCC 3 cut(s) 88, 94, 137
BsiSI CCGG 2 cut(s) 86, 92
BslI CCNNNNNNNGG 2 cut(s) 91, 134
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 2 cut(s) 26, 116
Bso31I GGTCTC 1 cut(s) 169
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 26, 116
BspCNI CTCAG 2 cut(s) 85, 179
BspLI GGNNCC 3 cut(s) 90, 96, 139
BspMAI CTGCAG 1 cut(s) 58
BspT107I GGYRCC 3 cut(s) 88, 94, 137
BspTNI GGTCTC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 113
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 21, 84
BssNI GRCGYC 2 cut(s) 89, 95
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 127
BstACI GRCGYC 2 cut(s) 89, 95
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 72, 166
BstF5I GGATG 1 cut(s) 109
BstH2I RGCGCY 3 cut(s) 84, 92, 98
BstHHI GCGC 3 cut(s) 83, 91, 97
BstMAI GTCTC 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 53, 113
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 20, 84
BstSFI CTRYAG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 40, 68
BsuRI GGCC 2 cut(s) 26, 116
BtsCI GGATG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 3 cut(s) 83, 91, 97
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 24
CviJI RGCY 4 cut(s) 26, 53, 71, 116
CviKI_1 RGCY 4 cut(s) 26, 53, 71, 116
DdeI CTNAG 2 cut(s) 72, 166
DinI GGCGCC 2 cut(s) 90, 96
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 20
EgeI GGCGCC 2 cut(s) 90, 96
EheI GGCGCC 2 cut(s) 90, 96
FaiI YATR 2 cut(s) 101, 161
FalI AAGNNNNNCTT 1 cut(s) 176
Fnu4HI GCNGC 3 cut(s) 54, 57, 114
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 54, 57, 114
GlaI GCGC 3 cut(s) 82, 90, 96
GluI GCNGC 3 cut(s) 54, 57, 114
GsuI CTGGAG 2 cut(s) 4, 129
HaeII RGCGCY 3 cut(s) 84, 92, 98
HaeIII GGCC 2 cut(s) 26, 116
HapII CCGG 2 cut(s) 86, 92
HhaI GCGC 3 cut(s) 83, 91, 97
Hin1I GRCGYC 2 cut(s) 89, 95
Hin6I GCGC 3 cut(s) 81, 89, 95
HinP1I GCGC 3 cut(s) 81, 89, 95
HpaII CCGG 2 cut(s) 86, 92
Hpy166II GTNNAC 1 cut(s) 133
Hpy188III TCNNGA 2 cut(s) 40, 74
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 113
HpyF3I CTNAG 2 cut(s) 72, 166
Hsp92I GRCGYC 2 cut(s) 89, 95
HspAI GCGC 3 cut(s) 81, 89, 95
KasI GGCGCC 2 cut(s) 88, 94
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 110, 149
LpnPI CCDG 7 cut(s) 7, 34, 59, 93, 99, 105, 141
Lsp1109I GCAGC 2 cut(s) 40, 68
LweI GCATC 3 cut(s) 24, 94, 161
MbiI CCGCTC 1 cut(s) 113
MboII GAAGA 3 cut(s) 22, 25, 114
MluCI AATT 1 cut(s) 196
Mly113I GGCGCC 2 cut(s) 89, 95
MreI CGCCGGCG 1 cut(s) 91
MroNI GCCGGC 1 cut(s) 91
MseI TTAA 1 cut(s) 199
MspI CCGG 2 cut(s) 86, 92
MspR9I CCNGG 2 cut(s) 22, 86
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 53, 113
NaeI GCCGGC 1 cut(s) 93
NarI GGCGCC 2 cut(s) 89, 95
NciI CCSGG 1 cut(s) 86
NgoMIV GCCGGC 1 cut(s) 91
NlaIV GGNNCC 3 cut(s) 90, 96, 139
NmeAIII GCCGAG 1 cut(s) 47
PdiI GCCGGC 1 cut(s) 93
PkrI GCNGC 3 cut(s) 55, 58, 115
PluTI GGCGCC 2 cut(s) 92, 98
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 3 cut(s) 90, 96, 139
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 1 cut(s) 58
SaqAI TTAA 1 cut(s) 199
SatI GCNGC 3 cut(s) 54, 57, 114
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 2 cut(s) 22, 86
SfaNI GCATC 3 cut(s) 24, 94, 161
SfcI CTRYAG 1 cut(s) 54
SfoI GGCGCC 2 cut(s) 90, 96
SgrAI CRCCGGYG 1 cut(s) 91
Sse9I AATT 1 cut(s) 196
SsiI CCGC 1 cut(s) 113
SspDI GGCGCC 2 cut(s) 88, 94
StyD4I CCNGG 2 cut(s) 20, 84
TaaI ACNGT 1 cut(s) 137
TasI AATT 1 cut(s) 196
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 199
Tru9I TTAA 1 cut(s) 199
TseI GCWGC 2 cut(s) 53, 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.