Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

66294320 .. 66294965

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAACATTTCTCGCCACCACGCGTGCATTTTCTACAATCTCACCCACCCCCGCTTTGCCTTGGAGGTCCTAGGGAAGCACAGTTGCCTCGTGGAGGGGGTTCTCCACCTCCCTGAAAACCTTCCAGTCAAGCTTGATTCGCAGGATCTGCTTCAGATTGGGGATAAAGAGGAAGGTGGTGGTAGTTGGAAGAAGAGGAGGAAGGCTATGAGGGTTATGGGTACAGTGGTGGGCTGGGTTCTGGATCGGGCACCAAGTCAGCAATTGCAATTGGGATACAGTTTGTTTTTTGAATCATATGATGGCGGAGGAGTCACAGGAGTGGCGGTCGAGAAAGGATTGGGAGTGGGGAAGAGAGTCGACAAGGGTGAGGACGGGGGCAGACTGAAAAGACGTGGTGGTCTTCTCACCGTTGTGGGAGTCGTGGGAGGGGCTTTAGACGTAGTAGACTGGGCAACAAGAGAATTGGGTTGGGATGATGGTCTACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

164

Amino Acids

17.76

Weight (kDa)

7.83

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	399
AccB1I	GGYRCC	1 cut(s)	250
AccI	GTMKAC	3 cut(s)	360, 447, 484
AccII	CGCG	1 cut(s)	23
AciI	CCGC	3 cut(s)	52, 306, 326
AclWI	GGATC	2 cut(s)	153, 252
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	293
AjiI	CACGTC	1 cut(s)	395
AleI	CACNNNNGTG	2 cut(s)	320, 413
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AlwI	GGATC	2 cut(s)	153, 252
AlwNI	CAGNNNCTG	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	120
AspA2I	CCTAGG	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	3 cut(s)	34, 380, 400
AvaII	GGWCC	1 cut(s)	67
AvrII	CCTAGG	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	253
BaeI	ACNNNNGTAYC	2 cut(s)	213, 246
BanI	GGYRCC	1 cut(s)	250
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	395
BccI	CCATC	2 cut(s)	296, 473
BciVI	GTATCC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	269
BlnI	CCTAGG	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	67
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	60, 70
BsaXI	ACNNNNNCTCC	2 cut(s)	312, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	125, 455
BseDI	CCNNGG	2 cut(s)	60, 70
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseNI	ACTGG	2 cut(s)	125, 455
BseRI	GAGGAG	2 cut(s)	211, 324
BseSI	GKGCMC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	1 cut(s)	330
BshNI	GGYRCC	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	145, 244
BspACI	CCGC	3 cut(s)	52, 306, 326
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	153, 252
BspT107I	GGYRCC	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	125, 455
BssECI	CCNNGG	2 cut(s)	60, 70
BssMI	GATC	2 cut(s)	145, 244
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	2 cut(s)	60, 70
Bst2BI	CACGAG	1 cut(s)	89
Bst4CI	ACNGT	4 cut(s)	83, 226, 281, 412
Bst6I	CTCTTC	2 cut(s)	188, 347
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	148, 247
BstMBI	GATC	2 cut(s)	145, 244
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 148
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	269
BtrI	CACGTC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	25
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	222
CviJI	RGCY	4 cut(s)	133, 206, 234, 434
CviKI_1	RGCY	4 cut(s)	133, 206, 234, 434
CviQI	GTAC	1 cut(s)	222
DpnI	GATC	2 cut(s)	147, 246
DpnII	GATC	2 cut(s)	145, 244
DrdI	GACNNNNNNGTC	1 cut(s)	399
DseDI	GACNNNNNNGTC	1 cut(s)	399
Eam1104I	CTCTTC	2 cut(s)	188, 347
EarI	CTCTTC	2 cut(s)	188, 347
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	60, 70
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	60, 70
ErhI	CCWWGG	2 cut(s)	60, 70
FaiI	YATR	4 cut(s)	209, 218, 298, 300
FauI	CCCGC	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	298
FblI	GTMKAC	3 cut(s)	360, 447, 484
FokI	GGATG	1 cut(s)	488
FspBI	CTAG	1 cut(s)	71
GsaI	CCCAGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	5 cut(s)	137, 293, 312, 357, 420
HphI	GGTGA	3 cut(s)	34, 380, 400
Hpy166II	GTNNAC	3 cut(s)	361, 448, 485
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	242, 331
Hpy8I	GTNNAC	3 cut(s)	361, 448, 485
HpyAV	CCTTC	3 cut(s)	131, 167, 196
HpyCH4III	ACNGT	4 cut(s)	83, 226, 281, 412
HpyCH4IV	ACGT	2 cut(s)	394, 441
HpyCH4V	TGCA	2 cut(s)	27, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 148
HpySE526I	ACGT	2 cut(s)	394, 441
Kzo9I	GATC	2 cut(s)	145, 244
LpnPI	CCDG	7 cut(s)	126, 128, 138, 220, 227, 303, 436
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	2 cut(s)	394, 441
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	2 cut(s)	147, 246
MboI	GATC	2 cut(s)	145, 244
MboII	GAAGA	4 cut(s)	202, 205, 364, 395
MfeI	CAATTG	2 cut(s)	263, 269
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	3 cut(s)	263, 269, 464
MluI	ACGCGT	1 cut(s)	21
MlyI	GAGTC	3 cut(s)	321, 366, 429
MmeI	TCCRAC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	120
MslI	CAYNNNNRTG	2 cut(s)	320, 413
MunI	CAATTG	2 cut(s)	263, 269
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	139, 148
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	2 cut(s)	145, 244
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	313
OliI	CACNNNNGTG	2 cut(s)	320, 413
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	137, 293
PleI	GAGTC	3 cut(s)	320, 365, 428
PpsI	GAGTC	3 cut(s)	320, 365, 428
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	2 cut(s)	320, 413
SalI	GTCGAC	1 cut(s)	359
Sau3AI	GATC	2 cut(s)	145, 244
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	3 cut(s)	321, 366, 429
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	7 cut(s)	69, 111, 123, 135, 178, 397, 444
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	2 cut(s)	320, 413
Sse9I	AATT	3 cut(s)	263, 269, 464
SsiI	CCGC	3 cut(s)	52, 306, 326
SspMI	CTAG	1 cut(s)	71
StyI	CCWWGG	2 cut(s)	60, 70
TaaI	ACNGT	4 cut(s)	83, 226, 281, 412
TaiI	ACGT	2 cut(s)	397, 444
TaqI	TCGA	2 cut(s)	330, 360
TasI	AATT	3 cut(s)	263, 269, 464
TfiI	GAWTC	2 cut(s)	137, 293
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	67
XagI	CCTNNNNNAGG	1 cut(s)	92
XmaJI	CCTAGG	1 cut(s)	70
XmiI	GTMKAC	3 cut(s)	360, 447, 484
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.