Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001537

Physical Location & Seq

Genomic Coordinates Reverse (-)

7178483 .. 7179118

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG040600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAACATCTCCTGCCACCACACGTGCATCTTCTACGACCTCACCCACTGCCGCTTCAGGCTGGAGGTCCTCGGGAAGCACGGCTGCCTCCTGGAGGGGGTTTTCCACCTCCCCAAAAACCGTCCAGTCAAGCTCAATTCACAGGATCTGCTTCAAATTAGGATAAAGAGTTTTACTTTTTGTTGCCTTGTGAGGAGTACTCTGGGTGGACCTATTGAGCCGAGGCATTATGCAATGGCGATCAGGGGTGGTGGTGGTAGTGGGAAGAAGATGAGGGAAGGGTATGAGGGTTATGGGTACAGTGGTGGGCTAGGTTCTGGATCGGGCACCAAGTCGCGTTCTTTGGCTTTAGGAGTCACGGGAGTGGCAGCCGACAAAAGATTGGGAGTGGGGAGGGGAGTCGACGGGGCTGAGGATGGGGGTAGACTGAAAAGTCGTAGTGGTCTTCTCGCCATTGTGGGAGTCGTGGGAGGGGCTTTGGACGTAGTAGACTGGGTGATAGGGGAATCGGGTCGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044212 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

173

Amino Acids

18.26

Weight (kDa)

9.5

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07260
prunus_persica	Prupe.7G068100_v2.0.a1 Prupe.7G068200_v2.0.a1 Prupe.8G198900_v2.0.a1
pyrus_communis	pycom14g05340 pycom14g05350 pycom14g05360
rosa_chinensis	RchiOBHm_Chr1g0319631 RchiOBHm_Chr3g0480971 RchiOBHm_Chr3g0480981 RchiOBHm_Chr5g0045161 RchiOBHm_Chr5g0045171 RchiOBHm_Chr5g0072291 RchiOBHm_Chr6g0245631
rosa_laevigata	RLG00000013572 RLG00000015457 RLG00000023437
rosa_multiflora	Rmu_co8060674.1_g000001 Rmu_sc0002402.1_g000001 Rmu_sc0022780.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032470 Rroxscaffold_6G00400780
rosa_rugosa	Rorug01G0028900 Rorug03G0188600 Rorug03G0335300 Rorug05G0162600 Rorug05G0246700
rosa_samantha	Rh1AG040600 Rh1AG078700 Rh1AG105700 Rh1BG037800 Rh2BG235700 Rh3AG239400 Rh3BG273900 Rh3BG294200 Rh3CG269400 Rh3DG265400 Rh3DG277600 Rh3DG283600 Rh4AG236400 Rh5BG311000 Rh5BG311100 Rh5BG311200 Rh5BG488800 Rh5CG512600 Rh6AG273500 Rh6CG275600 Rh6DG268700 Rh7AG445900
rosa_wichuraiana	Rw2G031500 Rw4G016550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	432
AccB1I	GGYRCC	1 cut(s)	326
AccI	GTMKAC	3 cut(s)	402, 424, 489
AccII	CGCG	1 cut(s)	337
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	2 cut(s)	153, 328
AcuI	CTGAAG	1 cut(s)	40
AcvI	CACGTG	1 cut(s)	24
AfaI	GTAC	2 cut(s)	199, 299
AfiI	CCNNNNNNNGG	2 cut(s)	94, 97
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	90
AleI	CACNNNNGTG	1 cut(s)	362
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AlwI	GGATC	2 cut(s)	153, 328
AlwNI	CAGNNNCTG	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	71
ApeKI	GCWGC	2 cut(s)	84, 368
AspS9I	GGNCC	2 cut(s)	67, 209
AsuHPI	GGTGA	2 cut(s)	34, 508
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	2 cut(s)	67, 209
BaeGI	GKGCMC	1 cut(s)	329
BaeI	ACNNNNGTAYC	2 cut(s)	289, 322
BanI	GGYRCC	1 cut(s)	326
BbrPI	CACGTG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	437
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	71, 380
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	92
BfaI	CTAG	1 cut(s)	311
BisI	GCNGC	3 cut(s)	52, 85, 369
BlsI	GCNGC	3 cut(s)	53, 86, 370
BmcAI	AGTACT	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	2 cut(s)	67, 209
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	67, 209
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	1 cut(s)	502
BmsI	GCATC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	502
BpiI	GAAGAC	1 cut(s)	437
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpmI	CTGGAG	2 cut(s)	83, 113
Bpu10I	CCTNAGC	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	70, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 97
Bse1I	ACTGG	2 cut(s)	125, 497
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	70, 221
BseGI	GGATG	1 cut(s)	421
BseLI	CCNNNNNNNGG	2 cut(s)	94, 97
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	125, 497
BseRI	GAGGAG	1 cut(s)	208
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	71, 380
Bsh1236I	CGCG	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	326
BsiHKCI	CYCGRG	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	94, 97
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	3 cut(s)	145, 240, 320
BspACI	CCGC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	153, 328
BspT107I	GGYRCC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	125, 497
BssECI	CCNNGG	2 cut(s)	70, 221
BssMI	GATC	3 cut(s)	145, 240, 320
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	122, 302
BstBAI	YACGTR	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	411
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	421
BstFNI	CGCG	1 cut(s)	337
BstKTI	GATC	3 cut(s)	148, 243, 323
BstMBI	GATC	3 cut(s)	145, 240, 320
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstSLI	GKGCMC	1 cut(s)	329
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	71, 380
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	421
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	46, 307
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	67, 209
Csp6I	GTAC	2 cut(s)	198, 298
CviJI	RGCY	9 cut(s)	61, 84, 133, 220, 310, 347, 371, 410, 476
CviKI_1	RGCY	9 cut(s)	61, 84, 133, 220, 310, 347, 371, 410, 476
CviQI	GTAC	2 cut(s)	198, 298
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	3 cut(s)	147, 242, 322
DpnII	GATC	3 cut(s)	145, 240, 320
DrdI	GACNNNNNNGTC	1 cut(s)	432
DseDI	GACNNNNNNGTC	1 cut(s)	432
Eco47I	GGWCC	2 cut(s)	67, 209
Eco57I	CTGAAG	1 cut(s)	40
Eco72I	CACGTG	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	90
FaiI	YATR	3 cut(s)	231, 285, 294
FblI	GTMKAC	3 cut(s)	402, 424, 489
Fnu4HI	GCNGC	3 cut(s)	52, 85, 369
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	3 cut(s)	52, 85, 369
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	3 cut(s)	52, 85, 369
GsuI	CTGGAG	2 cut(s)	83, 113
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	4 cut(s)	354, 399, 462, 506
HphI	GGTGA	2 cut(s)	34, 508
Hpy166II	GTNNAC	4 cut(s)	209, 403, 425, 490
Hpy188III	TCNNGA	2 cut(s)	73, 318
Hpy8I	GTNNAC	4 cut(s)	209, 403, 425, 490
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	2 cut(s)	122, 302
HpyCH4IV	ACGT	2 cut(s)	23, 483
HpyCH4V	TGCA	2 cut(s)	27, 233
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	2 cut(s)	23, 483
Kzo9I	GATC	3 cut(s)	145, 240, 320
Lsp1109I	GCAGC	2 cut(s)	71, 380
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	23, 483
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	147, 242, 322
MboI	GATC	3 cut(s)	145, 240, 320
MboII	GAAGA	4 cut(s)	22, 277, 280, 437
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	2 cut(s)	136, 156
MlyI	GAGTC	3 cut(s)	363, 408, 471
MslI	CAYNNNNRTG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	337
NdeII	GATC	3 cut(s)	145, 240, 320
NlaIV	GGNNCC	1 cut(s)	328
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	355
OliI	CACNNNNGTG	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	506
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	53, 86, 370
PleI	GAGTC	3 cut(s)	362, 407, 470
PmaCI	CACGTG	1 cut(s)	24
PmlI	CACGTG	1 cut(s)	24
PpsI	GAGTC	3 cut(s)	362, 407, 470
Ppu21I	YACGTR	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	90
PspCI	CACGTG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	67, 209
PspPPI	RGGWCCY	1 cut(s)	67
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	2 cut(s)	199, 299
RsaNI	GTAC	2 cut(s)	198, 298
RseI	CAYNNNNRTG	1 cut(s)	362
SalI	GTCGAC	1 cut(s)	401
SatI	GCNGC	3 cut(s)	52, 85, 369
Sau3AI	GATC	3 cut(s)	145, 240, 320
Sau96I	GGNCC	2 cut(s)	67, 209
ScaI	AGTACT	1 cut(s)	199
SchI	GAGTC	3 cut(s)	363, 408, 471
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	8 cut(s)	26, 42, 69, 111, 135, 214, 316, 486
SfaNI	GCATC	1 cut(s)	36
SinI	GGWCC	2 cut(s)	67, 209
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	136, 156
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	122, 302
TaiI	ACGT	2 cut(s)	26, 486
TaqI	TCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	136, 156
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	506
TscAI	CASTG	2 cut(s)	53, 307
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	2 cut(s)	84, 368
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	53, 307
VpaK11BI	GGWCC	2 cut(s)	67, 209
XagI	CCTNNNNNAGG	1 cut(s)	92
XmiI	GTMKAC	3 cut(s)	402, 424, 489
XspI	CTAG	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.