Rorug03G0188600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001537
Physical Location & Seq
Reverse (-)
16414883 .. 16416013
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0188600.1

Sequence Viewer

Length: 411 bp
ATGATTATAATAGATTCTCAAGGCCCTCACTACTCAGATCAAGGATATGGCATGGAAGGCCTCAGGAGCCTACAAGAACTGCAAGCCGTGTTCGAGGCCGTGTGGCGACCACCGCAACCGGAATTGTGGGGATTCCGATACAGCGTCGGAGTCGGTGAAGTTCCACTACTCCTATCGGAGAACCGGGAGCTCAAATTCGACGCCAAGGCTGTGGGGGAAGGAGATGGAGAGCAGGCTAAAGGCGCTTTCGAGCGGCGAACGGACGCTGCGTCGGTGAGTGGGATGACTGAGTCTGAGTCTGTGGACGCCACGCGCACAACACCACCACCCCCGCCGTCTCCGTTAGCCCGTACCCATGACACAACCCAGCAAGGACCCAACTCCAATCTGATCCCAACCCCATTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.77

Weight (kDa)

4.65

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 253
AccII CGCG 1 cut(s) 313
AciI CCGC 3 cut(s) 113, 253, 332
AclWI GGATC 1 cut(s) 385
AcsI RAATTY 1 cut(s) 194
AcyI GRCGYC 2 cut(s) 201, 306
AfaI GTAC 1 cut(s) 352
AhdI GACNNNNNGTC 1 cut(s) 268
AluBI AGCT 1 cut(s) 190
AluI AGCT 1 cut(s) 190
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 1 cut(s) 385
AoxI GGCC 3 cut(s) 22, 58, 96
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 2 cut(s) 245, 315
AspS9I GGNCC 2 cut(s) 23, 374
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 167, 286
AvaII GGWCC 1 cut(s) 374
AxyI CCTNAGG 1 cut(s) 62
BanII GRGCYC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 150, 182
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 253
BccI CCATC 1 cut(s) 218
BceAI ACGGC 3 cut(s) 71, 83, 319
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 2 cut(s) 254, 267
BlsI GCNGC 2 cut(s) 255, 268
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 374
BmeRI GACNNNNNGTC 1 cut(s) 268
BmgT120I GGNCC 2 cut(s) 23, 374
BmiI GGNNCC 2 cut(s) 68, 376
BmrFI CCNGG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 185
BsaHI GRCGYC 2 cut(s) 201, 306
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 1 cut(s) 118
Bse21I CCTNAGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 288
BseMII CTCAG 4 cut(s) 48, 76, 279, 285
BseXI GCAGC 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 366
Bsh1236I CGCG 1 cut(s) 313
BshFI GGCC 3 cut(s) 24, 60, 98
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 119, 184
BsmAI GTCTC 1 cut(s) 342
BsmBI CGTCTC 1 cut(s) 342
BsnI GGCC 3 cut(s) 24, 60, 98
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 37, 390
BspACI CCGC 3 cut(s) 113, 253, 332
BspANI GGCC 3 cut(s) 24, 60, 98
BspCNI CTCAG 4 cut(s) 47, 75, 280, 286
BspFNI CGCG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 68, 376
BspPI GGATC 1 cut(s) 385
BsrBI CCGCTC 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 37, 390
BssNI GRCGYC 2 cut(s) 201, 306
BssT1I CCWWGG 1 cut(s) 204
BstACI GRCGYC 2 cut(s) 201, 306
BstC8I GCNNGC 2 cut(s) 84, 234
BstDEI CTNAG 4 cut(s) 34, 62, 288, 294
BstF5I GGATG 1 cut(s) 288
BstFNI CGCG 1 cut(s) 313
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 245, 315
BstKTI GATC 2 cut(s) 40, 393
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 2 cut(s) 37, 390
BstMWI GCNNNNNNNGC 4 cut(s) 57, 66, 112, 242
BstSCI CCNGG 1 cut(s) 183
BstUI CGCG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 211
Bsu36I CCTNAGG 1 cut(s) 62
BsuRI GGCC 3 cut(s) 24, 60, 98
BtsCI GGATG 1 cut(s) 288
Cac8I GCNNGC 2 cut(s) 84, 234
CfoI GCGC 2 cut(s) 245, 315
Cfr13I GGNCC 2 cut(s) 23, 374
CseI GACGC 5 cut(s) 133, 209, 258, 272, 314
Csp6I GTAC 1 cut(s) 351
CviAII CATG 2 cut(s) 52, 356
CviJI RGCY 9 cut(s) 24, 60, 69, 86, 98, 190, 209, 236, 347
CviKI_1 RGCY 9 cut(s) 24, 60, 69, 86, 98, 190, 209, 236, 347
CviQI GTAC 1 cut(s) 351
DdeI CTNAG 4 cut(s) 34, 62, 288, 294
DpnI GATC 2 cut(s) 39, 392
DpnII GATC 2 cut(s) 37, 390
DriI GACNNNNNGTC 1 cut(s) 268
Eam1105I GACNNNNNGTC 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 374
Eco53kI GAGCTC 1 cut(s) 190
Eco81I CCTNAGG 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 2 cut(s) 23, 374
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 2 cut(s) 55, 359
FaiI YATR 5 cut(s) 8, 48, 53, 357, 409
FatI CATG 2 cut(s) 51, 355
FauI CCCGC 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 254, 267
FokI GGATG 1 cut(s) 295
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 2 cut(s) 254, 267
GlaI GCGC 2 cut(s) 244, 314
GluI GCNGC 2 cut(s) 254, 267
GsaI CCCAGC 1 cut(s) 370
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 3 cut(s) 24, 60, 98
HapII CCGG 2 cut(s) 119, 184
HgaI GACGC 5 cut(s) 133, 209, 258, 272, 314
HhaI GCGC 2 cut(s) 245, 315
Hin1I GRCGYC 2 cut(s) 201, 306
Hin1II CATG 2 cut(s) 55, 359
Hin6I GCGC 2 cut(s) 243, 313
HinP1I GCGC 2 cut(s) 243, 313
HinfI GANTC 5 cut(s) 14, 132, 150, 290, 296
HpaII CCGG 2 cut(s) 119, 184
HphI GGTGA 2 cut(s) 167, 286
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 6 cut(s) 37, 137, 149, 178, 295, 390
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 3 cut(s) 149, 203, 274
HpyAV CCTTC 2 cut(s) 50, 212
HpyCH4V TGCA 2 cut(s) 82, 407
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 66, 112, 242
HpyF3I CTNAG 4 cut(s) 34, 62, 288, 294
Hsp92I GRCGYC 2 cut(s) 201, 306
Hsp92II CATG 2 cut(s) 55, 359
HspAI GCGC 2 cut(s) 243, 313
Kzo9I GATC 2 cut(s) 37, 390
LmnI GCTCC 2 cut(s) 66, 187
LpnPI CCDG 5 cut(s) 49, 132, 197, 218, 380
Lsp1109I GCAGC 1 cut(s) 253
MalI GATC 2 cut(s) 39, 392
MbiI CCGCTC 1 cut(s) 253
MboI GATC 2 cut(s) 37, 390
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 122, 194
MlyI GAGTC 3 cut(s) 159, 299, 305
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 3 cut(s) 36, 71, 88
MspI CCGG 2 cut(s) 119, 184
MspR9I CCNGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 313
MwoI GCNNNNNNNGC 4 cut(s) 57, 66, 112, 242
NciI CCSGG 1 cut(s) 185
NdeII GATC 2 cut(s) 37, 390
NlaIII CATG 2 cut(s) 55, 359
NlaIV GGNNCC 2 cut(s) 68, 376
PceI AGGCCT 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 266
PfeI GAWTC 2 cut(s) 14, 132
PflFI GACNNNGTC 1 cut(s) 289
PkrI GCNGC 2 cut(s) 255, 268
PleI GAGTC 3 cut(s) 158, 298, 304
PpsI GAGTC 3 cut(s) 158, 298, 304
PpuMI RGGWCCY 1 cut(s) 374
PsiI TTATAA 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 374
PspFI CCCAGC 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 68, 376
PspPI GGNCC 2 cut(s) 23, 374
PspPPI RGGWCCY 1 cut(s) 374
PsyI GACNNNGTC 1 cut(s) 289
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SacI GAGCTC 1 cut(s) 192
SatI GCNGC 2 cut(s) 254, 267
Sau3AI GATC 2 cut(s) 37, 390
Sau96I GGNCC 2 cut(s) 23, 374
SchI GAGTC 3 cut(s) 159, 299, 305
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 192
SetI ASST 1 cut(s) 192
SinI GGWCC 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 2 cut(s) 122, 194
SseBI AGGCCT 1 cut(s) 60
SsiI CCGC 3 cut(s) 113, 253, 332
SstI GAGCTC 1 cut(s) 192
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 204
TaqI TCGA 3 cut(s) 93, 198, 249
TasI AATT 2 cut(s) 122, 194
TauI GCSGC 1 cut(s) 256
TfiI GAWTC 2 cut(s) 14, 132
TseI GCWGC 1 cut(s) 266
TspGWI ACGGA 2 cut(s) 275, 330
Tth111I GACNNNGTC 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 374
XapI RAATTY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.