Prupe.7G068200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001537
Physical Location & Seq
Reverse (-)
10651268 .. 10651487
220 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G068200.1

Sequence Viewer

Length: 216 bp
ATGGCACAAATCAGCATGTCCAGGGCCTTCTTCTTCGTCCAAATGCTGGTCTTGGTCGTCTTGGCGGCAACGGTTTCGGCGCAGGAGAGTGCGCCGGCACCGGCACCGGCACAGATGGATGCCGGGGCGGCTTACTCTTTGCCTGTAAACGGCGCAGCTGTTGGAGCGTCGCTTATGGTCTCAGTTTTTGCCTTGTTCAAGCACTACTTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.35

Weight (kDa)

6.5

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 97, 103
AccB7I CCANNNNNTGG 1 cut(s) 46
AciI CCGC 2 cut(s) 65, 128
AfiI CCNNNNNNNGG 2 cut(s) 46, 149
AgsI TTSAA 2 cut(s) 199, 211
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 184
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 155
AspLEI GCGC 3 cut(s) 82, 94, 155
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 124
BanI GGYRCC 2 cut(s) 97, 103
BbvI GCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 1 cut(s) 22
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 184
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 3 cut(s) 66, 129, 156
BlsI GCNGC 3 cut(s) 67, 130, 157
Bme1390I CCNGG 2 cut(s) 22, 124
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 2 cut(s) 99, 105
BmrFI CCNGG 2 cut(s) 22, 124
BmsI GCATC 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 21, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 149
Bse118I RCCGGY 3 cut(s) 94, 100, 106
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 21, 123
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 46, 149
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 167
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 2 cut(s) 97, 103
BsiSI CCGG 4 cut(s) 95, 101, 107, 123
BslI CCNNNNNNNGG 2 cut(s) 46, 149
BsmAI GTCTC 1 cut(s) 184
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 1 cut(s) 184
BspACI CCGC 2 cut(s) 65, 128
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 99, 105
BspT107I GGYRCC 2 cut(s) 97, 103
BspTNI GGTCTC 1 cut(s) 184
BsrFI RCCGGY 3 cut(s) 94, 100, 106
BssAI RCCGGY 3 cut(s) 94, 100, 106
BssECI CCNNGG 2 cut(s) 21, 123
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 181
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 3 cut(s) 82, 94, 155
BstMAI GTCTC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 128, 164
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 2 cut(s) 20, 122
BstV1I GCAGC 1 cut(s) 167
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 3 cut(s) 82, 94, 155
Cfr10I RCCGGY 3 cut(s) 94, 100, 106
Cfr13I GGNCC 1 cut(s) 24
CseI GACGC 1 cut(s) 156
CviAII CATG 1 cut(s) 16
CviJI RGCY 3 cut(s) 26, 131, 158
CviKI_1 RGCY 3 cut(s) 26, 131, 158
DdeI CTNAG 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 19
FaiI YATR 2 cut(s) 17, 176
FalI AAGNNNNNCTT 1 cut(s) 191
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 66, 129, 156
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 66, 129, 156
GlaI GCGC 3 cut(s) 81, 93, 154
GluI GCNGC 3 cut(s) 66, 129, 156
HaeIII GGCC 1 cut(s) 26
HapII CCGG 4 cut(s) 95, 101, 107, 123
HgaI GACGC 1 cut(s) 156
HhaI GCGC 3 cut(s) 82, 94, 155
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 3 cut(s) 80, 92, 153
HinP1I GCGC 3 cut(s) 80, 92, 153
HpaII CCGG 4 cut(s) 95, 101, 107, 123
Hpy166II GTNNAC 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 164
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 3 cut(s) 80, 92, 153
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 9 cut(s) 7, 32, 34, 68, 108, 114, 120, 136, 156
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 1 cut(s) 109
MboII GAAGA 2 cut(s) 22, 25
MluCI AATT 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 142
MroNI GCCGGC 1 cut(s) 94
MseI TTAA 1 cut(s) 214
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 4 cut(s) 95, 101, 107, 123
MspR9I CCNGG 2 cut(s) 22, 124
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 128, 164
NaeI GCCGGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 124
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 2 cut(s) 99, 105
NspI RCATGY 1 cut(s) 19
PdiI GCCGGC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 46
PkrI GCNGC 3 cut(s) 67, 130, 157
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 2 cut(s) 99, 105
PspPI GGNCC 1 cut(s) 24
PvuII CAGCTG 1 cut(s) 158
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 3 cut(s) 66, 129, 156
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 2 cut(s) 22, 124
SetI ASST 1 cut(s) 160
SfaNI GCATC 1 cut(s) 109
Sse9I AATT 1 cut(s) 211
SsiI CCGC 2 cut(s) 65, 128
StyD4I CCNGG 2 cut(s) 20, 122
TaaI ACNGT 1 cut(s) 73
TasI AATT 1 cut(s) 211
TauI GCSGC 2 cut(s) 68, 131
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TseI GCWGC 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 46
XceI RCATGY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.